Metagenome Family F101252

Basic Information
Family ID	F101252
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	47 residues
Representative Sequence	MRTIDAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR
Number of Associated Samples	88
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.53 %
% of genes near scaffold ends (potentially truncated)	32.35 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Most Common Taxonomy
Group	Bacteria (61.765 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.725 % of family members)
Environment Ontology (ENVO)	Unclassified (41.176 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.902 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.05% β-sheet: 0.00% Coil/Unstructured: 45.95%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01182	Glucosamine_iso	46.08
PF01784	NIF3	7.84
PF07690	MFS_1	7.84
PF02653	BPD_transp_2	2.94
PF05173	DapB_C	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0363	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase	Carbohydrate transport and metabolism [G]	46.08
COG0327	Putative GTP cyclohydrolase 1 type 2, NIF3 family	Coenzyme transport and metabolism [H]	7.84
COG3323	PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family	Function unknown [S]	7.84
COG0289	4-hydroxy-tetrahydrodipicolinate reductase	Amino acid transport and metabolism [E]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.76 %
Unclassified	root	N/A	38.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.76 %
Unclassified	root	N/A	38.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.76 %
Unclassified	root	N/A	38.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.88 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	1.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	5.88 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Chloroflexi bacterium 13_1_20CM_2_59_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	5.88 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	1.96 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Chloroflexi bacterium 13_1_20CM_2_59_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	5.88 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.96 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Chloroflexi bacterium 13_1_20CM_2_59_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	5.88 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1.96 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102685256	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300000956\|JGI10216J12902_104914430	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300003315\|P22013IDBA_10174941	Not Available	613	Open in IMG/M
3300004114\|Ga0062593_101467633	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300004114\|Ga0062593_102715748	Not Available	564	Open in IMG/M
3300004463\|Ga0063356_100452503	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300005061\|Ga0070921_1399197	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300005288\|Ga0065714_10107043	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300005293\|Ga0065715_10756774	Not Available	628	Open in IMG/M
3300005293\|Ga0065715_10765607	Not Available	624	Open in IMG/M
3300005328\|Ga0070676_10570819	All Organisms → cellular organisms → Bacteria → Acidobacteria	812	Open in IMG/M
3300005334\|Ga0068869_100492751	Not Available	1022	Open in IMG/M
3300005335\|Ga0070666_10313714	All Organisms → cellular organisms → Bacteria → Acidobacteria	1118	Open in IMG/M
3300005337\|Ga0070682_100748037	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300005338\|Ga0068868_100364127	All Organisms → cellular organisms → Bacteria → Acidobacteria	1241	Open in IMG/M
3300005339\|Ga0070660_100874273	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005353\|Ga0070669_100878466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	765	Open in IMG/M
3300005444\|Ga0070694_100298330	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300005455\|Ga0070663_100805199	Not Available	806	Open in IMG/M
3300005459\|Ga0068867_100249494	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1443	Open in IMG/M
3300005536\|Ga0070697_100634401	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300005545\|Ga0070695_101209211	Not Available	622	Open in IMG/M
3300005546\|Ga0070696_100386648	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300005718\|Ga0068866_10417980	Not Available	869	Open in IMG/M
3300005764\|Ga0066903_101596037	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300005764\|Ga0066903_102184849	All Organisms → cellular organisms → Bacteria → Acidobacteria	1067	Open in IMG/M
3300005764\|Ga0066903_107180986	Not Available	577	Open in IMG/M
3300006358\|Ga0068871_100321125	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300006847\|Ga0075431_100732229	Not Available	965	Open in IMG/M
3300006881\|Ga0068865_100102089	All Organisms → cellular organisms → Bacteria → Acidobacteria	2101	Open in IMG/M
3300009095\|Ga0079224_100359578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2093	Open in IMG/M
3300009100\|Ga0075418_11086835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	866	Open in IMG/M
3300009162\|Ga0075423_12680961	Not Available	545	Open in IMG/M
3300009176\|Ga0105242_10060872	All Organisms → cellular organisms → Bacteria	3104	Open in IMG/M
3300009553\|Ga0105249_10402915	All Organisms → cellular organisms → Bacteria → Acidobacteria	1399	Open in IMG/M
3300009553\|Ga0105249_12806205	Not Available	559	Open in IMG/M
3300010398\|Ga0126383_10481946	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300010399\|Ga0134127_10299559	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300010399\|Ga0134127_10315510	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300010401\|Ga0134121_10263392	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300010403\|Ga0134123_10131766	All Organisms → cellular organisms → Bacteria	2040	Open in IMG/M
3300010403\|Ga0134123_10790880	Not Available	941	Open in IMG/M
3300011400\|Ga0137312_1087881	Not Available	544	Open in IMG/M
3300012910\|Ga0157308_10039577	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300013308\|Ga0157375_10101208	All Organisms → cellular organisms → Bacteria	2964	Open in IMG/M
3300013308\|Ga0157375_12468981	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300014311\|Ga0075322_1055040	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300014326\|Ga0157380_10223847	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300014969\|Ga0157376_11500268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	707	Open in IMG/M
3300015200\|Ga0173480_10094669	All Organisms → cellular organisms → Bacteria → Acidobacteria	1438	Open in IMG/M
3300015372\|Ga0132256_102035293	Not Available	680	Open in IMG/M
3300015374\|Ga0132255_102511223	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300016270\|Ga0182036_11278485	Not Available	612	Open in IMG/M
3300018081\|Ga0184625_10337537	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300018429\|Ga0190272_10062199	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
3300018429\|Ga0190272_10547502	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300018466\|Ga0190268_12317501	Not Available	507	Open in IMG/M
3300018481\|Ga0190271_11964910	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300019362\|Ga0173479_10021289	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300019377\|Ga0190264_11969647	Not Available	534	Open in IMG/M
3300020016\|Ga0193696_1048714	Not Available	1119	Open in IMG/M
3300022756\|Ga0222622_11198607	Not Available	559	Open in IMG/M
3300022880\|Ga0247792_1013182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1299	Open in IMG/M
3300023102\|Ga0247754_1116301	Not Available	653	Open in IMG/M
3300023263\|Ga0247800_1037055	Not Available	852	Open in IMG/M
3300025321\|Ga0207656_10530727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	599	Open in IMG/M
3300025901\|Ga0207688_10036015	All Organisms → cellular organisms → Bacteria	2742	Open in IMG/M
3300025901\|Ga0207688_10492444	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300025907\|Ga0207645_11227111	Not Available	503	Open in IMG/M
3300025908\|Ga0207643_10885558	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300025911\|Ga0207654_10059178	All Organisms → cellular organisms → Bacteria → Acidobacteria	2233	Open in IMG/M
3300025914\|Ga0207671_10857108	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300025923\|Ga0207681_10878920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	750	Open in IMG/M
3300025923\|Ga0207681_11142436	Not Available	654	Open in IMG/M
3300025926\|Ga0207659_11869210	Not Available	509	Open in IMG/M
3300025930\|Ga0207701_11560332	Not Available	533	Open in IMG/M
3300025932\|Ga0207690_11311378	Not Available	605	Open in IMG/M
3300025934\|Ga0207686_10673281	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300025937\|Ga0207669_10245452	All Organisms → cellular organisms → Bacteria → Acidobacteria	1330	Open in IMG/M
3300025942\|Ga0207689_10658820	Not Available	882	Open in IMG/M
3300025961\|Ga0207712_10766637	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300026088\|Ga0207641_10233449	All Organisms → cellular organisms → Bacteria → Acidobacteria	1711	Open in IMG/M
3300026118\|Ga0207675_100639825	All Organisms → cellular organisms → Bacteria → Acidobacteria	1069	Open in IMG/M
3300027664\|Ga0207873_1026053	All Organisms → cellular organisms → Bacteria	2453	Open in IMG/M
3300027665\|Ga0209983_1151833	Not Available	531	Open in IMG/M
3300028587\|Ga0247828_10641921	Not Available	653	Open in IMG/M
3300028802\|Ga0307503_10530821	Not Available	639	Open in IMG/M
3300031228\|Ga0299914_10907951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300031538\|Ga0310888_10238953	Not Available	1015	Open in IMG/M
3300031548\|Ga0307408_102421378	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300031716\|Ga0310813_10371659	All Organisms → cellular organisms → Bacteria → Acidobacteria	1223	Open in IMG/M
3300031892\|Ga0310893_10153961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7	896	Open in IMG/M
3300031939\|Ga0308174_10903845	Not Available	746	Open in IMG/M
3300031942\|Ga0310916_11510914	Not Available	547	Open in IMG/M
3300032122\|Ga0310895_10268024	Not Available	796	Open in IMG/M
3300032122\|Ga0310895_10637098	Not Available	550	Open in IMG/M
3300032144\|Ga0315910_10420169	Not Available	1025	Open in IMG/M
3300032144\|Ga0315910_10494115	Not Available	943	Open in IMG/M
3300032180\|Ga0307471_101837525	Not Available	757	Open in IMG/M
3300033412\|Ga0310810_11101772	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300034147\|Ga0364925_0094864	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300034194\|Ga0370499_0105354	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.94%
Host-Associated	Host-Associated	45.10%
Engineered	Engineered	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Plants	Host-Associated → Plants	45.10%
Aquatic	Environmental → Aquatic	2.94%
Solid Waste	Engineered → Solid Waste	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.65%
Sediment	Environmental → Aquatic → Sediment	2.94%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%
Roots	Host-Associated → Plants → Roots	0.98%
Zoo Waste	Engineered → Solid Waste → Zoo Waste	0.98%
Feedstock	Engineered → Solid Waste → Feedstock	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Composting	Engineered → Solid Waste → Zoo Waste → Composting	0.98%
Composting	Engineered → Solid Waste → Feedstock → Composting	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.98%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%
Unclassified	Engineered → Solid Waste → Zoo Waste → Composting → Unclassified	0.98%
Unclassified	Engineered → Solid Waste → Feedstock → Composting → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.98%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Compost	Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost	0.98%
Feedstock Adapted Compost	Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003315	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P2 sample	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005061	Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 30 soap2	Engineered	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027664	Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost (SPAdes)	Engineered	Open in IMG/M
3300027665	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034194	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1026852561	3300000956	Soil	STDMRNLDVVLSDLEWQRLRRRVRNPAKALILNCRTWALIAVLKLVAR*
JGI10216J12902_1049144303	3300000956	Soil	MRNLDIVVSDLEWQRLRRRVSGNAAEAIFFNCGTWALIAVLKLVAR*
P22013IDBA_101749412	3300003315	Ore Pile And Mine Drainage Contaminated Soil	MRNLDAVVCDLEWQRLRRRVALNPAEAMLLNCGTWAVIAFLKLVSR*
Ga0062593_1014676332	3300004114	Soil	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR*
Ga0062593_1027157481	3300004114	Soil	MRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR*
Ga0063356_1004525032	3300004463	Arabidopsis Thaliana Rhizosphere	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR*
Ga0070921_13991972	3300005061	Compost	MHGLDALLSDLEWRRLRRRVSRHPAEAMFLNCWTWLRIMVLRSISR*
Ga0065714_101070433	3300005288	Miscanthus Rhizosphere	MRTIDAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR*
Ga0065715_107567742	3300005293	Miscanthus Rhizosphere	MRNIDSVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR*
Ga0065715_107656071	3300005293	Miscanthus Rhizosphere	MRHIDAVVSDLEWKRLRRRFVMNPAEALLLNCGTWAVIAVLRFVGR*
Ga0070676_105708191	3300005328	Miscanthus Rhizosphere	VGGELDMRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWA
Ga0068869_1004927511	3300005334	Miscanthus Rhizosphere	QPPVGGELDMRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR*
Ga0070666_103137143	3300005335	Switchgrass Rhizosphere	MRNIETVLSDLEFRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA*
Ga0070682_1007480372	3300005337	Corn Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA*
Ga0068868_1003641272	3300005338	Miscanthus Rhizosphere	MRNIDSVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA*
Ga0070660_1008742732	3300005339	Corn Rhizosphere	VGGELDMRNIDAVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAR*
Ga0070669_1008784661	3300005353	Switchgrass Rhizosphere	PPVGGELDMRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR*
Ga0070694_1002983301	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	ERARADMRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR*
Ga0070663_1008051992	3300005455	Corn Rhizosphere	SDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA*
Ga0068867_1002494943	3300005459	Miscanthus Rhizosphere	VLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR*
Ga0070697_1006344012	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRNLDVVVSDLEWLRLRRRVAGNAAKALFFNCGTWALIAVLKLVAR*
Ga0070695_1012092112	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRTIDAVVSDLEGKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR*
Ga0070696_1003866483	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	AVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVAR*
Ga0068866_104179802	3300005718	Miscanthus Rhizosphere	DAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR*
Ga0066903_1015960372	3300005764	Tropical Forest Soil	MRSIDALVSDLEWRRLRRRMNSNPAEAMLLNCGTWAVIFVLKLVGR*
Ga0066903_1021848491	3300005764	Tropical Forest Soil	MRNIDAVLSDLEFRRLRRRFVMHPAEAMVWNCGTWAVIAVLKFVAR*
Ga0066903_1071809862	3300005764	Tropical Forest Soil	VGGELDMRNIDAVLSDLEYRRLRRRFAMHRAGALLLNCGTWAVIIVLKVAARQA*
Ga0068871_1003211253	3300006358	Miscanthus Rhizosphere	VGGEPDMRNIETVLSDLEFRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA*
Ga0075431_1007322291	3300006847	Populus Rhizosphere	VNTDMRNLDVVVSDLEWQRLRRRVCGNPAEALFFNCGTWALIAVLKLVAR*
Ga0068865_1001020892	3300006881	Miscanthus Rhizosphere	VGGELDMRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAPYA*
Ga0079224_1003595781	3300009095	Agricultural Soil	MHGLDAVLSDLEWRRLRRRVARHPAEAMFLNCGTWALITVLRLVAR*
Ga0075418_110868351	3300009100	Populus Rhizosphere	MRNLDVVLSDLEWQRLRRRVCGNPAEALFFNCGTWALIAVLKLVAR*
Ga0075423_126809611	3300009162	Populus Rhizosphere	TIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR*
Ga0105242_100608727	3300009176	Miscanthus Rhizosphere	MRNIDAVLSDLEYRRLRRRFAMHPAEAMVLNCGTWAVIAVLRFVAR*
Ga0105249_104029153	3300009553	Switchgrass Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAAGMVLNCGTWAVIAVLRFVAR*
Ga0105249_128062052	3300009553	Switchgrass Rhizosphere	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVPKLVAR*
Ga0126383_104819462	3300010398	Tropical Forest Soil	MRNIDAVLGDLEYRRLRRRFAMHRAGALVLNCGTWAVIIVLKVAARQA*
Ga0134127_102995592	3300010399	Terrestrial Soil	MRNLDVVVSDLEWQRLRRRVCGNPAEALFFNCGTWALIAVLKLVAR*
Ga0134127_103155103	3300010399	Terrestrial Soil	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVSR*
Ga0134121_102633921	3300010401	Terrestrial Soil	RTHMRTIDAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVAR*
Ga0134123_101317663	3300010403	Terrestrial Soil	MRTIDAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR*
Ga0134123_107908802	3300010403	Terrestrial Soil	MRNIDAVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAR*
Ga0137312_10878812	3300011400	Soil	MRNLDVVVSDLEWQRLRRRVGRNPAEALFFNCGTWALIAVLKLVAR*
Ga0157308_100395772	3300012910	Soil	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGAWAVITVLKLVTR*
Ga0157375_101012081	3300013308	Miscanthus Rhizosphere	MRNIETVLSDLEFRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR*
Ga0157375_124689811	3300013308	Miscanthus Rhizosphere	ARRSQTPVGGELDMRNIDSVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA*
Ga0075322_10550402	3300014311	Natural And Restored Wetlands	MRNIEAVVSDLEWQRLRRRMVMNPAEALLLNCGTWAVIAVLKLVTR*
Ga0157380_102238471	3300014326	Switchgrass Rhizosphere	MRNLDVVVSDLEWQRLRRRVCGNPAEALFFNCGTWAL
Ga0157376_115002681	3300014969	Miscanthus Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRLVAR*
Ga0173480_100946691	3300015200	Soil	DMRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR*
Ga0132256_1020352931	3300015372	Arabidopsis Rhizosphere	VVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVAR*
Ga0132255_1025112231	3300015374	Arabidopsis Rhizosphere	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVIT
Ga0182036_112784852	3300016270	Soil	MRNIDAVLGDLEYRRLRRRFAMHRAGALVLNCGTWAVIIVLKVAARQA
Ga0184625_103375372	3300018081	Groundwater Sediment	MRNLDVVVSDLEWQRLRRRVARNPAQALFFNCGTWALIAVLKLVSR
Ga0190272_100621993	3300018429	Soil	MRNLDVVVSDLEWQRLRRRVAGNAAEALFFNCGTWALIAVLKLVAR
Ga0190272_105475022	3300018429	Soil	MRNLEVVVSDLEWQRLRRRVSGNAAEALFFNCGTWALIAVLKLVAR
Ga0190268_123175012	3300018466	Soil	VNSDMRNLDVVVSDLEWQRLRRRVAGNAAEALFFNCGTWALIAVLKLVAR
Ga0190271_119649102	3300018481	Soil	MRNLDVVVSDLEWQRLRRRVSGNTAEALFFNCGTWALIAVLKLVAR
Ga0173479_100212894	3300019362	Soil	MRTIDAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR
Ga0190264_119696472	3300019377	Soil	STDMRNLEVVVSDLEWQRLRRRVSGNAAEALFFNCGTWALIAVLKLVAR
Ga0193696_10487142	3300020016	Soil	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVSR
Ga0222622_111986072	3300022756	Groundwater Sediment	MQNLDVVVSDLEWRRLRRRVALHPAEALLRNCATWAIIAVLKLAAR
Ga0247792_10131823	3300022880	Soil	DLEWKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR
Ga0247754_11163012	3300023102	Soil	MRNLDVVLSDLEWQRLRRRVCGNPADALFFNCGTWALIAVLKLVAR
Ga0247800_10370552	3300023263	Soil	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR
Ga0207656_105307271	3300025321	Corn Rhizosphere	MRNIETVLSDLEFRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA
Ga0207688_100360156	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR
Ga0207688_104924441	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MRTIDAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLK
Ga0207645_112271111	3300025907	Miscanthus Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRF
Ga0207643_108855581	3300025908	Miscanthus Rhizosphere	FEARRSQTPVGGELDMRNIDSVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA
Ga0207654_100591782	3300025911	Corn Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAAGMVLNCGTWAVIAVLRFVAR
Ga0207671_108571082	3300025914	Corn Rhizosphere	MRTIDAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKL
Ga0207681_108789202	3300025923	Switchgrass Rhizosphere	ARKSRPPVGGELDMRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR
Ga0207681_111424361	3300025923	Switchgrass Rhizosphere	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVAR
Ga0207659_118692101	3300025926	Miscanthus Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA
Ga0207701_115603321	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRNLDVVVSDLEWQRLRRRVARNPAQAMFFNCGTWALIAVLKLVAR
Ga0207690_113113781	3300025932	Corn Rhizosphere	MRTIDAVLSDLEWKRLRRRFNMNPAAALLLNCGTWAVITVLKLVTR
Ga0207686_106732812	3300025934	Miscanthus Rhizosphere	MRNIDSVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRFVAPYA
Ga0207669_102454522	3300025937	Miscanthus Rhizosphere	MRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR
Ga0207689_106588201	3300025942	Miscanthus Rhizosphere	FADEARKSQPPVGGELDMRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAR
Ga0207712_107666373	3300025961	Switchgrass Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAV
Ga0207641_102334493	3300026088	Switchgrass Rhizosphere	MRNIDAVLSDLEYRRLRRRFVMHPAEALVLNCGTWAVIAVLRFVAPYA
Ga0207675_1006398251	3300026118	Switchgrass Rhizosphere	DAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR
Ga0207873_10260532	3300027664	Feedstock Adapted Compost	MHGLDALLSDLEWRRLRRRVSRHPAEAMFLNCWTWLRIMVLRSISR
Ga0209983_11518332	3300027665	Arabidopsis Thaliana Rhizosphere	MRNLDVVLSDLEWQRLRRRVCGNPAEALFFNCGTWALIAVLKLVAR
Ga0247828_106419212	3300028587	Soil	MRTVDVVVSDLEWQRLRRRVAGNPAEALLFNCGTWALILVLKLVAR
Ga0307503_105308212	3300028802	Soil	MRTIDAVVSDLEWKRLRRRFNMNPAEALVLNCGTWAVITVLKLVAR
Ga0299914_109079511	3300031228	Soil	MRNLDAVVSDLEWHRLRRRIAMRLPGALLFNGATWAVIAFLKLVGRS
Ga0310888_102389531	3300031538	Soil	MRTIEAVLSDLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR
Ga0307408_1024213781	3300031548	Rhizosphere	MRNLEVIDSDLEWQRLRRRVAMNPAEALFLNCGTWAIIAVLKLVTR
Ga0310813_103716591	3300031716	Soil	DLEWKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR
Ga0310893_101539612	3300031892	Soil	MRNLDVVVSDLEWQRLRRRVCGNPAEALFFNCGTWALIAVLKLVAR
Ga0308174_109038452	3300031939	Soil	MRNIEAVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRYVAR
Ga0310916_115109141	3300031942	Soil	MRNIDAVLGDLEYRRLRRRFAMHRAGALVLNCGTWAVIIVLKVAA
Ga0310895_102680242	3300032122	Soil	NTDMRNLDVVVSDLEWQRLRRRVCGNPAEALFFNCGTWALIAVLKLVAR
Ga0310895_106370982	3300032122	Soil	ARADMRTIDAVVSDLELKRLRRRFNMNPAEALLLNCGTWAVITVLKLVTR
Ga0315910_104201692	3300032144	Soil	MRNLDVVLSDLEWQRLRRRVRNPAKALILNCRTWALIAVLKLVAR
Ga0315910_104941151	3300032144	Soil	MRNLDTVVCDLEWRRLRRRIGRNPAEALFLNCGTWAVITFLKLVAR
Ga0307471_1018375252	3300032180	Hardwood Forest Soil	NPERARADMRTIDAVVSDLEWKRLRRRFNMNPAEALLLNCGTWAVIAVLKLVAR
Ga0310810_111017722	3300033412	Soil	MRNIDAVLSDLEYRRLRRRFVMHPAEAMVLNCGTWAVIAVLRLVAR
Ga0364925_0094864_133_273	3300034147	Sediment	MRNLDVVVSDLEWRRLRRRVGRNPAEAMFFNCGTWALIAVLKLVAR
Ga0370499_0105354_449_571	3300034194	Untreated Peat Soil	VVSDLEWQRLRRRLASTPPEAIFFNCGTWALIAVLKLVAR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101252

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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