NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300026855

3300026855: Soil and rhizosphere microbial communities from Laval, Canada - mgLMA (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026855 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0099864 | Gp0111023 | Ga0208404
Sample NameSoil and rhizosphere microbial communities from Laval, Canada - mgLMA (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size41248312
Sequencing Scaffolds44
Novel Protein Genes48
Associated Families46

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1
Not Available24
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomerhizospheresoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000708Metagenome / Metatranscriptome926Y
F000846Metagenome / Metatranscriptome862Y
F001152Metagenome / Metatranscriptome764Y
F001440Metagenome / Metatranscriptome694Y
F001448Metagenome / Metatranscriptome692Y
F001755Metagenome / Metatranscriptome641Y
F001789Metagenome / Metatranscriptome633Y
F003142Metagenome / Metatranscriptome505Y
F004466Metagenome / Metatranscriptome437Y
F005249Metagenome / Metatranscriptome407N
F005599Metagenome / Metatranscriptome395Y
F010430Metagenome / Metatranscriptome304Y
F010490Metagenome / Metatranscriptome303N
F010651Metagenome / Metatranscriptome301N
F012994Metagenome / Metatranscriptome275Y
F014183Metagenome / Metatranscriptome265Y
F021157Metagenome / Metatranscriptome220N
F023155Metagenome / Metatranscriptome211Y
F025082Metagenome / Metatranscriptome203Y
F025163Metagenome / Metatranscriptome203Y
F026311Metagenome / Metatranscriptome198N
F026671Metagenome / Metatranscriptome197Y
F027877Metagenome193Y
F027955Metagenome / Metatranscriptome193N
F030583Metagenome / Metatranscriptome185Y
F031265Metagenome / Metatranscriptome183N
F034996Metagenome / Metatranscriptome173N
F041747Metagenome / Metatranscriptome159Y
F042052Metagenome / Metatranscriptome159Y
F045025Metagenome153Y
F052082Metagenome / Metatranscriptome143N
F054018Metagenome / Metatranscriptome140N
F054114Metagenome140Y
F056104Metagenome / Metatranscriptome138N
F057709Metagenome136Y
F067485Metagenome / Metatranscriptome125N
F069061Metagenome / Metatranscriptome124Y
F070357Metagenome / Metatranscriptome123Y
F074990Metagenome / Metatranscriptome119N
F079283Metagenome / Metatranscriptome116Y
F084190Metagenome / Metatranscriptome112Y
F084616Metagenome / Metatranscriptome112Y
F087447Metagenome / Metatranscriptome110Y
F087837Metagenome / Metatranscriptome110N
F099798Metagenome / Metatranscriptome103N
F106009Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208404_1000013All Organisms → cellular organisms → Bacteria → Proteobacteria2656Open in IMG/M
Ga0208404_1000046All Organisms → cellular organisms → Bacteria → Proteobacteria2022Open in IMG/M
Ga0208404_1000150All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1551Open in IMG/M
Ga0208404_1000193All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1494Open in IMG/M
Ga0208404_1000209Not Available1464Open in IMG/M
Ga0208404_1000397Not Available1231Open in IMG/M
Ga0208404_1000508Not Available1145Open in IMG/M
Ga0208404_1000526Not Available1137Open in IMG/M
Ga0208404_1000572All Organisms → cellular organisms → Bacteria → Proteobacteria1109Open in IMG/M
Ga0208404_1001047All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales901Open in IMG/M
Ga0208404_1001182All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria867Open in IMG/M
Ga0208404_1001341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium833Open in IMG/M
Ga0208404_1001345All Organisms → cellular organisms → Bacteria → Proteobacteria833Open in IMG/M
Ga0208404_1001442Not Available817Open in IMG/M
Ga0208404_1001483All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei811Open in IMG/M
Ga0208404_1001746All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae773Open in IMG/M
Ga0208404_1001849Not Available758Open in IMG/M
Ga0208404_1001928Not Available748Open in IMG/M
Ga0208404_1002018Not Available737Open in IMG/M
Ga0208404_1002190Not Available716Open in IMG/M
Ga0208404_1002601Not Available680Open in IMG/M
Ga0208404_1002646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria677Open in IMG/M
Ga0208404_1002679Not Available675Open in IMG/M
Ga0208404_1002787Not Available666Open in IMG/M
Ga0208404_1003072All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
Ga0208404_1003302Not Available634Open in IMG/M
Ga0208404_1003336Not Available632Open in IMG/M
Ga0208404_1003469Not Available624Open in IMG/M
Ga0208404_1003523Not Available621Open in IMG/M
Ga0208404_1003735Not Available610Open in IMG/M
Ga0208404_1003998Not Available597Open in IMG/M
Ga0208404_1004034Not Available595Open in IMG/M
Ga0208404_1004318All Organisms → cellular organisms → Bacteria → Acidobacteria583Open in IMG/M
Ga0208404_1004347Not Available581Open in IMG/M
Ga0208404_1004517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium574Open in IMG/M
Ga0208404_1004562Not Available572Open in IMG/M
Ga0208404_1005123Not Available552Open in IMG/M
Ga0208404_1005557All Organisms → cellular organisms → Bacteria537Open in IMG/M
Ga0208404_1005830Not Available529Open in IMG/M
Ga0208404_1005974All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium525Open in IMG/M
Ga0208404_1006567All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria509Open in IMG/M
Ga0208404_1006709All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium506Open in IMG/M
Ga0208404_1006918Not Available501Open in IMG/M
Ga0208404_1006919All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208404_1000013Ga0208404_10000134F026671VMVQGLPPQGGSEGSTKQTCESMDKNRIKGASAGRAGHLPRSPYPSRVRSVDSATVHGRRLSLPQEICSVSLRRLRQPRGGLTAGQKSAEGIIGHVVGKASEALRTERWRQQIGRAGNGD
Ga0208404_1000046Ga0208404_10000462F025163MQLTLAFLEPSPPARPSPSQKLDAETRAEALNILARIIAQACETTKQTETTDE
Ga0208404_1000150Ga0208404_10001501F001152MRGEFINEYQKLNSEDQKAFRRWLWANAVVGAILLTGLIALALQSDESGATAQNATMHTQAKLP
Ga0208404_1000193Ga0208404_10001932F000708MTKLDLALSQIAARFTQHDVEWSRGAFMIIDRRTTNPIARPRPIPDTDRFELFYWSNAKGRWTTFGNFGRMKLMLESAHEIVESDPMFRIPRGR
Ga0208404_1000209Ga0208404_10002092F005249MVKLTTKEDIALLVEEASEMFEETGCVPDVNGKKVRAEKIVPRAKRYILETIDNPKASYDATIWHSPGYTLVLSWLSQKWLKYCHKLAPTVLKDADLHLPKDQRKLCLDWAADELTRQITRRRQRFH
Ga0208404_1000397Ga0208404_10003972F010430MGAGGAAMKCLACGAEMRLIDVRPDRTTVCGIERHTFRCSACTHTAQRLTLNRARVPITNLPVVIPPKAPVIDPHNGPAAQSAWAKSIEKVNNKQAELKQREAATTEWGSVVEKLSVRLKQQAVAARAEALARTVEKLRSLHTGLLVRMSDSEFDRVWYGHCPDEAAPKPVSLGPEPLRDDGAA
Ga0208404_1000508Ga0208404_10005081F003142MVSNFQDSSPLDNCPDASGDDLEGDSKMNHHDLITIQQITNLVERGKSREEIAELIEVTIDSLQVTCSRLGISLRRPRLDNGIRLLPRGKPVPSDGRTTPDLSCDVSVPLQPIAERRQDSQPGPEQTQYTTPHQAGSKAKEMDFANLALTMRYKGEERTTELALTQLAIGQLALEAGLRDMSIGELVSELLTATIQKNLFQRALDLS
Ga0208404_1000508Ga0208404_10005082F001440MPNAKSVGWAIYAAGFVVWLFGYLSAGHVSVIDWPWWISSFVPNLEAEFGLALTFVSMVPIYWRTILGWWRRRQKIA
Ga0208404_1000526Ga0208404_10005262F052082ADKRIEVKTALANLVAKGTEFWGGPTGEDTEGVAVFEGSVDVSNEGGAVVLYARALTQSRVQSQTPASGLHSRSSTDPIGTTLTRGRGPSQAVIWQQEKTDRAVAAVTARNFFTISGNSSGP
Ga0208404_1000567Ga0208404_10005672F025082MEYSKKSPQGGSRMASIDTSKMDVEGLKSAGFPLVMSFSDDQRRELKSLAHLLGLESVMAGL
Ga0208404_1000572Ga0208404_10005721F087447VSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0208404_1001047Ga0208404_10010471F067485MESLALFFSGFGRLAPKPFARAVVAVYVAAFLSQLLISPPAMLRIGLAAFALIQAMAMWAWFCLHAK
Ga0208404_1001182Ga0208404_10011823F056104TTLRHAIARQINAAAKVVIMTPFLGPQPWEAPDPLPVMRRELKLLLIEMNLLRIEVEQSRSIREEAQAREAFFSASVKQLTEGRDKWRREAERLRDLIEQDPPWSLFWRRLVDSFAASRRSASEWHRA
Ga0208404_1001341Ga0208404_10013412F001448MKKKKERRTYLPRIVGDKVMMPADLKRLHKYMLEIEHISVISDEVRAIVEEEWPELVHKLPPKTPRG
Ga0208404_1001345Ga0208404_10013451F045025PIHPGAYAFIPKEIALQLPTYADNQAISVREDDQWEADRIVQIEQRFTQWLAS
Ga0208404_1001442Ga0208404_10014421F021157MSQHRLFYFMELKEPKAACGLFPSLSWCCYRVEWRPGQKFHDTHRDVGDGVIEVWQDRFVLAVDPGGVEYDAGQTDALMAARFKKRNAEAAQGLRGPGARGSVLVGLR
Ga0208404_1001483Ga0208404_10014831F005599ASKVTMRMPTLLPFGEGRVSGEAIDKSTRSIRRGSGHGTSERWFG
Ga0208404_1001746Ga0208404_10017462F031265LAINPHYACAVKRRWTTAGESPARELGSLHPEAIRAAAEETKPSEPLV
Ga0208404_1001849Ga0208404_10018491F023155RVEPIALTARQRLQTERQAIERDGTIKPHEILRARWSVSLRDSTRNLEDRKGYSGSSRGLLWGGACGKVLDSLVDAGVQTWAFIEIVQCPAATKSEPAVERRAMSGVRSLIR
Ga0208404_1001849Ga0208404_10018492F004466MAEHEDEVVGVYELLDAIEGVIQAADPTKREILAKTIDAYAEDFPDDFYWAVGPQAPALLNSLLQMIDAACRPGSQSKP
Ga0208404_1001928Ga0208404_10019281F041747EAIMPRSISKFVMVAVAIGMAVVGASAIGIAAAQSSHEQAKTTTHRIMATVLKTEFRIDDHQQLRKVFLGGDRLR
Ga0208404_1002018Ga0208404_10020181F099798MLSALAACDVRHAHLVRCLFGRTRSRHPCAPNAGMRCGLPASSRQCGRCLGWPSTYAEAADTSEPPNASPIPHHRSGFDRRAAYEFPCSAPALANADDPNMDDQPKTRLICRRCAARMKLARQLPWLDHRLPAILLFQCIDCGHVDMIEWPESAGEEAP
Ga0208404_1002190Ga0208404_10021902F054114MAETPQVVSFQEKRAAYTMDEHKKPVPAYTIEPMTRKTFVNRTVKDEIGFRVVPTEVVLEGYMVRTLRGDSAFLSHEDVVRLKLDKNLVPMLIEGGDDTPVGMQQVNAALSDKQKTALDVLTKLIESDPKAVEKLLAANAVQEPVEE
Ga0208404_1002601Ga0208404_10026012F027955MDEIGEHAWIISIVGNFLTLFGAYWTARAILLAPEQAAEIAAGRWDNEPLKNALLKQSNDARAGLVCVAVGAGFQIVSKLIEGFFS
Ga0208404_1002646Ga0208404_10026461F014183MAKKADFSEQEWDALHKGVTGAGLLVSLSDRSFFDTFKEAGALGKHVAKAKQTGSSELVRELADVH
Ga0208404_1002679Ga0208404_10026792F000846SGDGGVLKRAAMAHLVDKDFVQRANTAVLLSILWGGLAACAIGAMIYDIAHWVNAW
Ga0208404_1002787Ga0208404_10027872F030583GRLAYPMRGEVTNRAVLGRKRHGRPEHPVRMPSGGNDLGGSKLGGLKIIK
Ga0208404_1003072Ga0208404_10030722F012994LKEDEELTAEILEAAVRALRRIHLRRRQEEVQQDLKKPGLAADKDRLRELLTELERISRALRDPGLAEDGLKNAAKQKTA
Ga0208404_1003302Ga0208404_10033021F084190MNRKVRTLVRGVFLALALSAVFSAQASAAPAWNFAGKALEGKETIMGGAFESALTLPGLVTKCENFLYKLTIENSAGTGQGSLTEMPLYNCTTNSKFCTVKTIGAEALPYPSHLTTVTTSNYIVIEGVKVAILYAGELCALGGTTAKVTGSAGGLVDNATEIATFNAASFTATKTELKALGGKAEWAGVFPTEAFEWHRE
Ga0208404_1003336Ga0208404_10033362F079283MDAARADTWSNVLTRNALLHAGQSVDDNLNTPRDSGEIVASRLWYQLAMWRDVRAF
Ga0208404_1003469Ga0208404_10034691F001755MALKLRPIGLGSGIDKDRPDYTVFTGEWEVGRIYETRGGPDSLRWFWSLTVSGPMTRSDRVATLEEAKAQFQKSWDAWKAWAMLEEVP
Ga0208404_1003523Ga0208404_10035231F087837MNDILERAARCGLETEYRDAFGQLQSVEPEILARLLDSLAVGGEEPPRMLPRTVVIRGQADRSLHLSVPEGLPLWWEIWSEQKITDGECVSPVLHLPQGLPHGVFRLHVRVAAPAGPLTNVAC
Ga0208404_1003735Ga0208404_10037351F010490GVQDLKEKLALSVPFDELGKAEHYLLIDQFDRVRGNYFNRYIIGIPNFKPVLWSRDDLAAVYVIPYFVRDVASIEHLKVTFKQWIEADPVRPLHQDHARYAAYAVAPLTRDDPMTVGHYSGLPVLLDGYHRAVRFWRTSAPTATLAVYVPV
Ga0208404_1003998Ga0208404_10039981F026311MRCMACGEEMRLTRVVRDETYERHTLHCLGCEEVERPLVLLAPRHDADAKDNQADQKFAPSSAWARAVAALRGRQRSMDKPATGAKTNAQWDREFSQLWDEPFPRQ
Ga0208404_1004034Ga0208404_10040341F042052MRYIVIVAALILSYGPTASHAQRVYEAGNDSCGKYLAAVHGHAPGKGTGFKDRWRGQFYDDHTRYMDWLGGFVTATNLWVTNEPNVRIKSDDAAIDVWIRKWCEKNPTKTLFQAAAEFVRDQRKDYLEA
Ga0208404_1004318Ga0208404_10043181F070357VVMRNGVPELKSFGWHETLSNDESGVAAAIERFALSETTCV
Ga0208404_1004347Ga0208404_10043471F054018SQAGGGFCVRLITYHTGWRDNPMRKLEIIGLAFVAATAFGVWSASPAAQSRVGKADVLAASAPISPHVIMWH
Ga0208404_1004517Ga0208404_10045171F069061MVFDFRHKNVEGKWKSSGHRKGLTRDAAFASLEEMNGQMPAGRYMSRPRDGKTRDWDLFTRP
Ga0208404_1004562Ga0208404_10045622F034996MKLGLGVLTLVNVALTCFGVSMAMMSPMLFDSGGQDDQLLWAVFWSIFVFPAVALICVFVPWLFLWLKWPRTALFAAVIPLAWLAAVFAVIFIR
Ga0208404_1005123Ga0208404_10051231F001789MEHSGQDSEGKPGIVRNFLAYEADKERAIELVRKRVPVHEGELAEAVAEVGADELIGERMRPGDVRQP
Ga0208404_1005557Ga0208404_10055571F025163LLEPPPPARQSPRQELDAETRAEALNILARIIAQACETTQNTEATDE
Ga0208404_1005614Ga0208404_10056141F084616ISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE
Ga0208404_1005830Ga0208404_10058301F074990TVGTILVGVSALAADAQHLRQPKHDAPERLRMIRECMGMHHKHRGDSPFHSGGNERLYSACMANHGHHG
Ga0208404_1005974Ga0208404_10059741F106009MVVYDDVSKFFPVRIRPGQKERPEFMVALDRVTATVRKGELITLL
Ga0208404_1006567Ga0208404_10065671F057709MSEFTLKIAFDIFVWKLLDPFAAVPALIVGYFCRAWWQVVIAAAAVGIIVEMILVAL
Ga0208404_1006709Ga0208404_10067091F001440RRRREKPRGGRMPNVKSIGWAIYAVGCAIWLFGYLSTGHAPAFDWAVATPWWISTFVPNREAELGLALMFASMIPIYWRAGQERVH
Ga0208404_1006918Ga0208404_10069182F027877MGYNARNDEIRDNITRMRRDWEEERDALAAVRRFNAKLSAKG
Ga0208404_1006919Ga0208404_10069191F010651RPAAFEISANTGTLKETVQRGQELIWVRKDTPSDRRFQVTNISVGFLRSEAGGQVQMTFSGNISSLGYSTSEEPKLNVIVRTKGGASLHSWNLGFSVKCGDNNQPLTPVTHEVPRDLAANLFTNVGAVEIAEFNEPNSSGVKVQPCS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.