Metagenome / Metatranscriptome Family F087447

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087447
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	49 residues
Representative Sequence	LTRDEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Number of Associated Samples	99
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.94 %
% of genes near scaffold ends (potentially truncated)	94.55 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.546 % of family members)
Environment Ontology (ENVO)	Unclassified (22.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.63% β-sheet: 0.00% Coil/Unstructured: 47.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00005	ABC_tran	56.36
PF12399	BCA_ABC_TP_C	10.00
PF03401	TctC	3.64
PF02653	BPD_transp_2	2.73
PF07992	Pyr_redox_2	0.91
PF01609	DDE_Tnp_1	0.91
PF02371	Transposase_20	0.91
PF00583	Acetyltransf_1	0.91
PF01471	PG_binding_1	0.91
PF01243	Putative_PNPOx	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.64
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.91
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.91
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.91
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.27 %
Unclassified	root	N/A	12.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.27 %
Unclassified	root	N/A	12.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.27 %
Unclassified	root	N/A	12.73 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	80.91 %
Unclassified	root	N/A	12.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.18 %
Unclassified	root	N/A	12.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.45 %
Unclassified	root	N/A	12.73 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.73 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.64 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	2.73 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.73 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	3.64 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	2.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.91 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.73 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	3.64 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	2.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.91 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.73 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.73 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	2.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Rhodopseudomonas palustris BisA53	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	0.91 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.91 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000912\|JGI12032J12867_1006294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300000955\|JGI1027J12803_108188037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300002245\|JGIcombinedJ26739_100115386	All Organisms → cellular organisms → Bacteria → Proteobacteria	2526	Open in IMG/M
3300002910\|JGI25615J43890_1080857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300004016\|Ga0058689_10157567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisA53	528	Open in IMG/M
3300005165\|Ga0066869_10052567	Not Available	721	Open in IMG/M
3300005167\|Ga0066672_10923165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300005174\|Ga0066680_10289097	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300005178\|Ga0066688_10341841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	968	Open in IMG/M
3300005332\|Ga0066388_107170014	Not Available	560	Open in IMG/M
3300005355\|Ga0070671_100473896	All Organisms → cellular organisms → Bacteria → Proteobacteria	1075	Open in IMG/M
3300005363\|Ga0008090_10048070	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300005363\|Ga0008090_10087428	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300005365\|Ga0070688_100949279	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300005553\|Ga0066695_10609741	Not Available	653	Open in IMG/M
3300005764\|Ga0066903_102170537	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300005764\|Ga0066903_106924803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300005764\|Ga0066903_107184360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300005764\|Ga0066903_107824845	Not Available	549	Open in IMG/M
3300005843\|Ga0068860_100523301	All Organisms → cellular organisms → Bacteria → Proteobacteria	1186	Open in IMG/M
3300005983\|Ga0081540_1346723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300006038\|Ga0075365_10128071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1755	Open in IMG/M
3300006038\|Ga0075365_10258896	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
3300006178\|Ga0075367_10866171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300006573\|Ga0074055_11731604	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300006800\|Ga0066660_10695247	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300006846\|Ga0075430_100419955	All Organisms → cellular organisms → Bacteria → Proteobacteria	1104	Open in IMG/M
3300006871\|Ga0075434_101541332	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300006904\|Ga0075424_102318772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300006953\|Ga0074063_10107773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	980	Open in IMG/M
3300009162\|Ga0075423_10076064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3493	Open in IMG/M
3300010043\|Ga0126380_10907579	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300010043\|Ga0126380_10966600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300010044\|Ga0126310_11348643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300010048\|Ga0126373_11137672	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300010048\|Ga0126373_11219733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	818	Open in IMG/M
3300010361\|Ga0126378_13344269	Not Available	509	Open in IMG/M
3300010366\|Ga0126379_11139991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	886	Open in IMG/M
3300010366\|Ga0126379_12784315	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300010366\|Ga0126379_12804909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300012198\|Ga0137364_10067206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2441	Open in IMG/M
3300012202\|Ga0137363_11476314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300012211\|Ga0137377_10415806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1283	Open in IMG/M
3300012361\|Ga0137360_10561870	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300012469\|Ga0150984_121843565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300012911\|Ga0157301_10088664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	886	Open in IMG/M
3300012939\|Ga0162650_100062179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300012960\|Ga0164301_10592519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	817	Open in IMG/M
3300014325\|Ga0163163_12519315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300014326\|Ga0157380_10571574	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113	Open in IMG/M
3300014969\|Ga0157376_11744388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300016341\|Ga0182035_11368657	Not Available	635	Open in IMG/M
3300016404\|Ga0182037_11523966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300016404\|Ga0182037_11907309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300016422\|Ga0182039_10112476	Not Available	2036	Open in IMG/M
3300017792\|Ga0163161_11367390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300018000\|Ga0184604_10328181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300018028\|Ga0184608_10227346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300018077\|Ga0184633_10491502	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300021082\|Ga0210380_10000807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	13063	Open in IMG/M
3300021168\|Ga0210406_10212898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1599	Open in IMG/M
3300024055\|Ga0247794_10128466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300025321\|Ga0207656_10345385	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
3300025916\|Ga0207663_10887005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300025931\|Ga0207644_10480019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1024	Open in IMG/M
3300025938\|Ga0207704_10411441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1070	Open in IMG/M
3300026308\|Ga0209265_1089009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300026855\|Ga0208404_1000572	All Organisms → cellular organisms → Bacteria → Proteobacteria	1109	Open in IMG/M
3300027288\|Ga0208525_1044497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300027480\|Ga0208993_1002652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2902	Open in IMG/M
3300027527\|Ga0209684_1058829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300027663\|Ga0208990_1008587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3398	Open in IMG/M
3300027909\|Ga0209382_11834071	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300027910\|Ga0209583_10108266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1082	Open in IMG/M
3300028047\|Ga0209526_10049264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2966	Open in IMG/M
3300028714\|Ga0307309_10021673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1254	Open in IMG/M
3300028782\|Ga0307306_10086658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	821	Open in IMG/M
3300028790\|Ga0307283_10143070	All Organisms → cellular organisms → Bacteria → Proteobacteria	655	Open in IMG/M
3300028791\|Ga0307290_10272953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300028793\|Ga0307299_10186421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300028811\|Ga0307292_10332753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300030336\|Ga0247826_11193682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300031170\|Ga0307498_10105486	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300031573\|Ga0310915_11071857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300031832\|Ga0318499_10349735	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031833\|Ga0310917_10994573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300031845\|Ga0318511_10053185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1629	Open in IMG/M
3300031910\|Ga0306923_11629716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300031912\|Ga0306921_10918826	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300031942\|Ga0310916_10172661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1796	Open in IMG/M
3300031945\|Ga0310913_10080668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2172	Open in IMG/M
3300032001\|Ga0306922_10012091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8471	Open in IMG/M
3300032009\|Ga0318563_10691227	Not Available	548	Open in IMG/M
3300032013\|Ga0310906_10263614	All Organisms → cellular organisms → Bacteria → Proteobacteria	1082	Open in IMG/M
3300032041\|Ga0318549_10087413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1344	Open in IMG/M
3300032060\|Ga0318505_10069390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1550	Open in IMG/M
3300032065\|Ga0318513_10092781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1405	Open in IMG/M
3300032066\|Ga0318514_10219637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	997	Open in IMG/M
3300032067\|Ga0318524_10171795	All Organisms → cellular organisms → Bacteria → Proteobacteria	1102	Open in IMG/M
3300032076\|Ga0306924_10961270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	940	Open in IMG/M
3300032076\|Ga0306924_12207380	Not Available	561	Open in IMG/M
3300032174\|Ga0307470_11445240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300032261\|Ga0306920_103458091	Not Available	585	Open in IMG/M
3300033004\|Ga0335084_10126995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2652	Open in IMG/M
3300033289\|Ga0310914_11130731	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300034151\|Ga0364935_0019860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1802	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.91%
Host-Associated	Host-Associated	19.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.36%
Plants	Host-Associated → Plants	19.09%
Aquatic	Environmental → Aquatic	4.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Sediment	Environmental → Aquatic → Sediment	3.64%
Roots	Host-Associated → Plants → Roots	3.64%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.91%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.82%
Loam	Environmental → Terrestrial → Soil → Loam	11.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.73%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000912	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026855	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12032J12867_10062942	3300000912	Forest Soil	RALLDEAVSRAIQAEAQQQGETAAAHDLNRQCAEILKFIAEKL*
JGI1027J12803_1081880371	3300000955	Soil	VKSGALTRDEAVRALIDEAVSRAIQAEAQQQDEATAAHDLNRQCAEILKFIAEKL*
JGIcombinedJ26739_1001153861	3300002245	Forest Soil	KGVLAREEAVRILLDEAVARAIQAEAQTPGAGVSKTTMDTNRQCAEILKFIAEKL*
JGI25615J43890_10808571	3300002910	Grasslands Soil	KGVLTRDEAVRVLLDEAVSRAIQAEAPHAGEATNDVNRQCAEILKFIAEKL*
Ga0058689_101575672	3300004016	Agave	LVKKGLLSRDEAVRVILDEAVSRAIQAEAQHADPSAGDINRQCAEILKFIAEKL*
Ga0066869_100525671	3300005165	Soil	LDEAVSRAIQAEAQQQDEAAALDVNRQCAEILKFIAEKL*
Ga0066672_109231652	3300005167	Soil	RVLLDEAVSRAIQAEAPHAGETTNDVNRQCAEILKFIAEKL*
Ga0066680_102890971	3300005174	Soil	TRDEAVRVLLDEAVSRAIQAEAPHAGEATNDVNRQCAEILKFIAEKL*
Ga0066688_103418412	3300005178	Soil	RDEAVRVLLDEAVARAIQAEAAGDSETTNDLNRQSAEILKFIAEKL*
Ga0066388_1071700141	3300005332	Tropical Forest Soil	KGVLTRDEAVRVLLDEAVSRAIQAEAPHQGEAPNDVNRQCAEILKFIAEKL*
Ga0070671_1004738961	3300005355	Switchgrass Rhizosphere	RTLVKSGVLPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL*
Ga0008090_100480701	3300005363	Tropical Rainforest Soil	KGVLTRDEAVRVLLDEAVSRAIQAETPHEGEAPNDVNRQCAEILKFIAEKL*
Ga0008090_100874281	3300005363	Tropical Rainforest Soil	LLDEAVSRAIQAEAPHQAEAPNDVNRQCAEILKFIAEKL*
Ga0070688_1009492791	3300005365	Switchgrass Rhizosphere	KNGVLPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL*
Ga0066695_106097411	3300005553	Soil	GVLSRDEAVRVILDEAVSRAIQAEAQHADPSAGDVNRQCAEILKFIADKL*
Ga0066903_1021705371	3300005764	Tropical Forest Soil	GVLTREEAVRALLDEAVSRAIQAEAQQHGDATTGDLNRQCAEILKFIAEKL*
Ga0066903_1069248031	3300005764	Tropical Forest Soil	ALFRALVRKGVLTRDEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL*
Ga0066903_1071843602	3300005764	Tropical Forest Soil	VALFRALVKKGVLTRDEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0066903_1078248452	3300005764	Tropical Forest Soil	GVLTRDEAVRVLLDEAVSRAIQAEAPHAGEAPNDVNRQCAEILKFIAEKL*
Ga0068860_1005233011	3300005843	Switchgrass Rhizosphere	GVLPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL*
Ga0081540_13467232	3300005983	Tabebuia Heterophylla Rhizosphere	EAVRALLDEAVSRAIQAEAQQQGDATTGDLNRQCAEILKFIAEKL*
Ga0075365_101280711	3300006038	Populus Endosphere	VSRAIQAEAQQQGEEAASDINRQCAEILKFIAEKL*
Ga0075365_102588961	3300006038	Populus Endosphere	VLPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL*
Ga0075367_108661712	3300006178	Populus Endosphere	LTRDEAVRALLDEAVSRAIQAEAQQQGEEAASDINRQCAEILKFIAEKL*
Ga0074055_117316042	3300006573	Soil	GALSRDEAVRALLDEAVSRAIQAEAQQQDDATAAHDLNRQCAEILKFIAEKL*
Ga0066660_106952471	3300006800	Soil	IEAVDAAGRDEAVRVILDEAVARAIQAEAQAQEAPGGRSTIDINRQSAEILKFIAEKL*
Ga0075421_1023041242	3300006845	Populus Rhizosphere	RVLLDEAVARAIQAEAHSHEDGRTTSELNRQCAQILKFIAEKL*
Ga0075430_1004199553	3300006846	Populus Rhizosphere	VRALLDEAVSRAIQAEAQQQGDATTGDLNRQCAEILKFIAEKL*
Ga0075434_1015413321	3300006871	Populus Rhizosphere	LLDEAVSRAIQAEAPHAGEATNDVNRQCAEILKFIAEKL*
Ga0075424_1023187722	3300006904	Populus Rhizosphere	LLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL*
Ga0074063_101077731	3300006953	Soil	VLTRDEAVRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL*
Ga0075423_100760645	3300009162	Populus Rhizosphere	ALVRKGVLTRDEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL*
Ga0126380_109075791	3300010043	Tropical Forest Soil	DEAVRVLLNEAVSRAIQAEAPHQGEATNDVNRQCAEILKFIAEKL*
Ga0126380_109666001	3300010043	Tropical Forest Soil	TVALYRVLVKNGVLTRDEAVRALLDEAVSRAIQAEAQQQGDATTGDLNRQCAEILKFIAEKL*
Ga0126310_113486431	3300010044	Serpentine Soil	LLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAERL*
Ga0126384_115203241	3300010046	Tropical Forest Soil	DEAVRALLDEAVARAIQAEAHGESRSTTDINRQSAEILKFIAEKL*
Ga0126373_111376721	3300010048	Tropical Forest Soil	LLEEAVSRAIQAETPHEGEAPNDVNRQCAEILKFIAEKL*
Ga0126373_112197332	3300010048	Tropical Forest Soil	RDEAVRVLLEEAVSRAIRAEAPHQGEATNDVNRQCAEILKFIAEKL*
Ga0126378_133442692	3300010361	Tropical Forest Soil	VLTRDEAVRVLLDEAVSRAIQAEAPHAGEAPNDVNRQCAEILKFIAEKL*
Ga0126379_111399912	3300010366	Tropical Forest Soil	FRALVKKGVLTRDEAVRVLLDEAVSRAIQAEAPHQGEAPNDVNRQCAEILKIIAEKL*
Ga0126379_127843152	3300010366	Tropical Forest Soil	EAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL*
Ga0126379_128049091	3300010366	Tropical Forest Soil	VLLDEAVSRAIQAEAPHQGEGPNDVNRQCAEILKFIAEKL*
Ga0137364_100672063	3300012198	Vadose Zone Soil	EATAILLDEAVARAIQAEAQQGPEATATTMEIDRQCAEILKFIAEKL*
Ga0137363_114763141	3300012202	Vadose Zone Soil	DEAVRVLLDEAVSRAIQAEAPHAGEATNDVNRQCAEILKFIAEKL*
Ga0137377_104158061	3300012211	Vadose Zone Soil	VSRAIQAEAPHAGEATNDVNRQCAEILKFIAEKL*
Ga0137360_105618702	3300012361	Vadose Zone Soil	VRKGVLTRDEAVRVLLDEAVSRAIQAEAPHAGEATNDVNRQCAEILKFIAEKL*
Ga0150984_1218435651	3300012469	Avena Fatua Rhizosphere	EAVRTLLDEAVSRAIQAEAQQHGEAAAHDVNRQCAEILKFIAEKL*
Ga0157301_100886641	3300012911	Soil	LPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL*
Ga0162650_1000621792	3300012939	Soil	RVLVKNGVLSRDEAVRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL*
Ga0164301_105925191	3300012960	Soil	LYRTLVKNGVLPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL*
Ga0163163_125193152	3300014325	Switchgrass Rhizosphere	VLSRDEAVRTLLDEAVSRAIQAEAQQQGEAAALDVNRQCAEILKFIAEKL*
Ga0157380_105715741	3300014326	Switchgrass Rhizosphere	KNGVLTRDEAVRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL*
Ga0157376_117443882	3300014969	Miscanthus Rhizosphere	RALLDEAVSRAIQAEAQQGETTTNDLNRQCAEILKFIAEKL*
Ga0182035_113686571	3300016341	Soil	VLTRDEAVRVLLDEAVSRAIQAEAPHAGEATNDVNRQCAEILKFIADKL
Ga0182037_115239661	3300016404	Soil	RVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAGSFDCFQAR
Ga0182037_119073092	3300016404	Soil	ALFRALVKKGVLTRDEAVRVLLDEAVSRAIQAEAPHQGEATNDVNRQCAEILKFIAEKL
Ga0182039_101124762	3300016422	Soil	VTVALFRALVKKGVLTREEAVRVILDEAVARAIQAESEGRTGDDVDRQSAEILKFIAEKL
Ga0163161_113673902	3300017792	Switchgrass Rhizosphere	RTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0184604_103281812	3300018000	Groundwater Sediment	ALLDEAVSRAIQAEAQQPGEATAAHDLNRQCAEILKFIAEKL
Ga0184608_102273462	3300018028	Groundwater Sediment	ALVKSGALTRDEAVRALIDEAVSRAIQAEAQQQDDATAAHDLNRQCAEILKFIAEKL
Ga0184633_104915021	3300018077	Groundwater Sediment	KSGALTRDEAVRALIDEAVSRAIQAEAQQQDDATAAHDLNRQCAEILKFIAEKL
Ga0210380_1000080712	3300021082	Groundwater Sediment	VRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0210406_102128983	3300021168	Soil	AVRVLLDEAVSRAIQAEAPHAGEATNDVNRQCAEILKFIAEKL
Ga0247794_101284662	3300024055	Soil	VPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL
Ga0207656_103453852	3300025321	Corn Rhizosphere	AVRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0207663_108870051	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VLPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL
Ga0207644_104800193	3300025931	Switchgrass Rhizosphere	YRTLVKSGVLPREEAVRALLDEAVSRAIQAEAQQGEATTNDLNRQCAEILKFIAEKL
Ga0207704_104114411	3300025938	Miscanthus Rhizosphere	AVVALYRVLVRNGVLSRDEAVRSLLDEAVSRAIQAEAQQQGEAGAHDVNRQCAEILKFIAEKL
Ga0209265_10890091	3300026308	Soil	KKGLMTRDEAVRVLLDEAVARAIQAEAAGDSETTNDLNRQSAEILKFIAEKL
Ga0208404_10005721	3300026855	Soil	VSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0208525_10444971	3300027288	Soil	LYRVLVKNGVLTRDEAVRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0208993_10026524	3300027480	Forest Soil	LVKSGALTRDEAVRALLDEAVSRAIQAEAQQQDEAEPAHDLNRQCAEILKFIAERL
Ga0209684_10588292	3300027527	Tropical Forest Soil	RALVKKGVLSRDEAVRILLDEAVSRAIQAEAPHEGEAPNDVNRQCAEILKFIAEKL
Ga0208990_10085875	3300027663	Forest Soil	LVKNGVLTRDEAVRALLDEAVSRAIQAEAQQQGETAAAHDLNRQCAEILKFIAEKL
Ga0209382_118340711	3300027909	Populus Rhizosphere	EAVRVLLDEAVARAIQAEAHSHEDGRTTSELNRQCAQILKFIAEKL
Ga0209583_101082661	3300027910	Watersheds	MSSIGFHFEPLIKKGLLTRDEAVRVLLDEAVSRAIQAEAQSQEPGSGRTTTTTDMNRQSAEILKFIAEKL
Ga0209526_100492645	3300028047	Forest Soil	VLTRDEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0307309_100216733	3300028714	Soil	DEAVSRAIQAEAQQQGEATAAHDLNRQCAEILKFIAEKL
Ga0307306_100866581	3300028782	Soil	KNGVLTRDEAVRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAERL
Ga0307283_101430701	3300028790	Soil	EAVRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAERL
Ga0307290_102729531	3300028791	Soil	YRTLIKNGALTRDEAVRALLDEAVSRAIQAEAQQQGEATAAHDLNRQCAEILKFIAEKL
Ga0307299_101864211	3300028793	Soil	AVRALLDEAVSRAIQAEAQQQGEATAAHDLNRQCAEILKFIAEKL
Ga0307292_103327532	3300028811	Soil	LLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0247826_111936821	3300030336	Soil	LFRSLVGKGVLTREEAVRAILDEAVARAIQAEAESPHDDINRQSAEILKFIAERL
Ga0307498_101054861	3300031170	Soil	LLKNGALTRDEAVRALLDEAVSRAIQAEAQQQDDATAAHDLNRQCAEILKFIAEKL
Ga0310915_110718572	3300031573	Soil	VLLDEAVSRAIQAEAPHAGEAPNDVNRQCAEILKFIAEKL
Ga0318499_103497352	3300031832	Soil	GLMTRDEAVRVLLDEAVARAIQAEAAGDSETTNDLNRQSAEILKFIAEKL
Ga0310917_109945732	3300031833	Soil	RKGVLTRDEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0318511_100531853	3300031845	Soil	DEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0318512_104529911	3300031846	Soil	KGVLAREEAVRLLLDEAVARAIQAEAQSQETDARATMDINRQSSEILKFIAEKL
Ga0306923_116297162	3300031910	Soil	LLDEAVSRAIQAEAPHAGEAPNDVNRQCAEILKFIAEKL
Ga0306921_109188262	3300031912	Soil	VRVLLDEAVSRAIQAEAPHQGEAPNDVNRQCAEILKFIAEKL
Ga0310916_101726614	3300031942	Soil	DEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAGSFDCFQAR
Ga0310913_100806681	3300031945	Soil	LTRDEAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0306922_100120916	3300032001	Soil	GLLSREEAVRLLLDEAVARAIQAEAQSQEGGSGRTPADINRQSAEILKFIAEKL
Ga0318563_106912271	3300032009	Soil	EAVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0310906_102636141	3300032013	Soil	AVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0318549_100874131	3300032041	Soil	AVRVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAGSFDCFQAR
Ga0318505_100693903	3300032060	Soil	GLRTRDEAVRVLLDEAVARAIQAEAAGDSETTNDLNRQSAEILKFIAEKL
Ga0318513_100927813	3300032065	Soil	EAVWVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0318514_102196372	3300032066	Soil	EAVSRAIQAEAPHAGEAPNDVNRQCAEILKFIAEKL
Ga0318524_101717951	3300032067	Soil	RVLLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0306924_109612701	3300032076	Soil	LLDEAVSRAIQAEAPHEGEATNDVNRQCAEILKFIAEKL
Ga0306924_122073801	3300032076	Soil	LYRTLIKKGVLTREEAARVLLDEAVARAIQAEGQATGGTDAEVNLQSAEILKFIAEKL
Ga0318540_103754882	3300032094	Soil	VLAREEAVRLLLDEAVARAIQAEAQSQETDARATMDINRQSSEILKFIAEKL
Ga0307470_114452402	3300032174	Hardwood Forest Soil	NGVLTRDEAVRTLLDEAVSRAIQAEAQQQGEAAAHDVNRQCAEILKFIAEKL
Ga0306920_1034580912	3300032261	Soil	LIKKGVLAREEAVRLLLDEAVARAIQAEAQSQESGGRNTMDINRQSAEILKFIAEKL
Ga0335084_101269953	3300033004	Soil	RALLDEAVSRAIQAEAQQHGDATTGDLNRQCAEILKFIAEKL
Ga0310914_111307312	3300033289	Soil	KGLLTQEEAVRLILDEAVARAIQAEAQTSTPGSTMDVNRQAAEILKFIAEKL
Ga0364935_0019860_1616_1801	3300034151	Sediment	ALIKKGLFTRDEAVRVLLDEAVTRAIQAEAQSQEPGSGRTTTTADMNRQSAEILKFIAEK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087447

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences