 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F084616 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 112 |
| Average Sequence Length | 49 residues |
| Representative Sequence | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 112 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 50.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 83 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.42 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (98.214 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (12.500 % of family members) |
| Environment Ontology (ENVO) | Unclassified (29.464 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (47.321 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.68% β-sheet: 2.63% Coil/Unstructured: 48.68% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 112 Family Scaffolds |
|---|---|---|
| PF08241 | Methyltransf_11 | 26.79 |
| PF14224 | DUF4331 | 16.07 |
| PF02754 | CCG | 9.82 |
| PF12730 | ABC2_membrane_4 | 5.36 |
| PF01741 | MscL | 5.36 |
| PF12847 | Methyltransf_18 | 1.79 |
| PF13649 | Methyltransf_25 | 1.79 |
| PF12679 | ABC2_membrane_2 | 1.79 |
| PF00005 | ABC_tran | 0.89 |
| PF13432 | TPR_16 | 0.89 |
| PF13669 | Glyoxalase_4 | 0.89 |
| PF14559 | TPR_19 | 0.89 |
| PF02518 | HATPase_c | 0.89 |
| PF05834 | Lycopene_cycl | 0.89 |
| PF00694 | Aconitase_C | 0.89 |
| COG ID | Name | Functional Category | % Frequency in 112 Family Scaffolds |
|---|---|---|---|
| COG0247 | Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF | Energy production and conversion [C] | 9.82 |
| COG2048 | Heterodisulfide reductase, subunit B | Energy production and conversion [C] | 9.82 |
| COG1970 | Large-conductance mechanosensitive channel | Cell wall/membrane/envelope biogenesis [M] | 5.36 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 98.21 % |
| All Organisms | root | All Organisms | 1.79 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005338|Ga0068868_100003149 | All Organisms → cellular organisms → Bacteria | 11487 | Open in IMG/M |
| 3300010371|Ga0134125_10030657 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 5987 | Open in IMG/M |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 12.50% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 12.50% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 7.14% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 5.36% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 5.36% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.46% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 4.46% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 3.57% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 3.57% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.68% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.68% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.68% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 2.68% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 2.68% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.68% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 2.68% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.79% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 1.79% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.79% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.79% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.79% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 0.89% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.89% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.89% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.89% |
| Sugarcane Root And Bulk Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil | 0.89% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.89% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.89% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.89% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.89% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.89% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.89% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.89% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.89% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.89% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.89% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2124908008 | Soil microbial communities from sample at FACE Site Metagenome WIR_Elev2 | Environmental | Open in IMG/M |
| 3300001538 | Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina | Environmental | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300003267 | Sugarcane bulk soil Sample L1 | Environmental | Open in IMG/M |
| 3300004081 | Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2) | Environmental | Open in IMG/M |
| 3300004153 | Grasslands soil microbial communities from Hopland, California, USA (version 2) | Environmental | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005167 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 | Environmental | Open in IMG/M |
| 3300005179 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 | Environmental | Open in IMG/M |
| 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Environmental | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Environmental | Open in IMG/M |
| 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
| 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
| 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Environmental | Open in IMG/M |
| 3300005552 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 | Environmental | Open in IMG/M |
| 3300005587 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 | Environmental | Open in IMG/M |
| 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Host-Associated | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006914 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Host-Associated | Open in IMG/M |
| 3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300010044 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60 | Environmental | Open in IMG/M |
| 3300010154 | Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300012011 | Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M | Environmental | Open in IMG/M |
| 3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300012987 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Host-Associated | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300017993 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3 | Environmental | Open in IMG/M |
| 3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300019362 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) | Environmental | Open in IMG/M |
| 3300021418 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2 | Environmental | Open in IMG/M |
| 3300021445 | Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026308 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes) | Environmental | Open in IMG/M |
| 3300026855 | Soil and rhizosphere microbial communities from Laval, Canada - mgLMA (SPAdes) | Environmental | Open in IMG/M |
| 3300028778 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142 | Environmental | Open in IMG/M |
| 3300028799 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123 | Environmental | Open in IMG/M |
| 3300028824 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197 | Environmental | Open in IMG/M |
| 3300031170 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S | Environmental | Open in IMG/M |
| 3300031226 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S | Environmental | Open in IMG/M |
| 3300031366 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031679 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031779 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031797 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 | Environmental | Open in IMG/M |
| 3300031938 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1 | Environmental | Open in IMG/M |
| 3300032074 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1 | Environmental | Open in IMG/M |
| 3300033233 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom | Environmental | Open in IMG/M |
| 3300034268 | Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| FWIREl_08126220 | 2124908008 | Soil | MSAGRFFMWLISGGIVVATLAVLAGPGYSGVPGQWIGLLVAVSFASIAFGLGYYE |
| A10PFW1_111206172 | 3300001538 | Permafrost | MWVISGGIATATVAVLAGPGLSGVPGHWLGLAIACLFSGIAFGLGFYE* |
| C688J35102_1180492321 | 3300002568 | Soil | VVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| C688J35102_1204574241 | 3300002568 | Soil | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFATIAFGLGYYE* |
| C688J35102_1207815011 | 3300002568 | Soil | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIA |
| soilL1_101071152 | 3300003267 | Sugarcane Root And Bulk Soil | MWVIAGGIVAAMLAVLAGPGLSGVPGEWAGLAIAAGFAVISFALGFYE* |
| Ga0063454_1000811192 | 3300004081 | Soil | MWLISGLIVVATVAVLAGPGYDGVPGHWLGLAVATSFVVISFALGLYE* |
| Ga0063455_1012153721 | 3300004153 | Soil | TVRCRALVDSAAMSAGRIAMWLISGLIVVATVAVLAGPGYDGVPGHWLGLAVATSFVVISFALGLYE* |
| Ga0062589_1000744892 | 3300004156 | Soil | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0062589_1013922362 | 3300004156 | Soil | RMSAGRAAMWTISGGITTATVAVLAGPGLSGVPGEWFGLAVACVFAAVSFALGFYE* |
| Ga0062595_1006725481 | 3300004479 | Soil | FMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0066672_100336772 | 3300005167 | Soil | MSAGRIAMWLISGLIVVAVVAVLAGPGYNGVPGHWIGLVVAASFVAISFALGLYE* |
| Ga0066684_103497422 | 3300005179 | Soil | MWVISGGITTATIAVLAGPGLSGVPGEWFGLAVACLFACISFALGFYE* |
| Ga0070676_109017671 | 3300005328 | Miscanthus Rhizosphere | MWVISGGIVVATVAVLAGPGYDGIPGQWIGLLVAVAFASIAFALGYYE* |
| Ga0070666_101945422 | 3300005335 | Switchgrass Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGCYE* |
| Ga0068868_1000031496 | 3300005338 | Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLAAVSFASIAFGLGYYE* |
| Ga0070674_1010369742 | 3300005356 | Miscanthus Rhizosphere | MWVISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0070714_1000663403 | 3300005435 | Agricultural Soil | MWLISGLIVVATVAVLAGPGYDGVPGHWVGLVVAASFVVISFALGLYE* |
| Ga0070714_1001535993 | 3300005435 | Agricultural Soil | MWLISAGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0070714_1010587412 | 3300005435 | Agricultural Soil | MWLISTLVTVATVAVLLGPGYDGVPGRWIGLVVAASFAAVSFGLGFYE* |
| Ga0070714_1010702412 | 3300005435 | Agricultural Soil | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYY |
| Ga0070714_1011215332 | 3300005435 | Agricultural Soil | MWLISGLIVVATVAVLAGPGYDGVPGHWVGLLVATSFVVISFALGLYE* |
| Ga0070713_1009616762 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MWVISGGIVVAMVAVLAGPGFDGVPGHWIGLTVAVAFAIIAFSLGYYE* |
| Ga0070710_104697671 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYDGVPGHWIGLVVAAAFASIAFALGFYE* |
| Ga0070710_114010491 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | RMSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0070711_1005323912 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYSGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0070711_1005480812 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MSAGRASMWLISGGIVVATLAVLAGPGYDGVPGHWIGLVVAAAFASIAFALGFYE* |
| Ga0070681_101698681 | 3300005458 | Corn Rhizosphere | MWVISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGY |
| Ga0070706_1013544452 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MWVISGGITTATLAVLAGPGLSGVPGEWFGLAVACLFACIAFALGFYE* |
| Ga0070679_1004608403 | 3300005530 | Corn Rhizosphere | ISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0068853_1006626602 | 3300005539 | Corn Rhizosphere | RMSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLAAVSFASIAFGLGYYE* |
| Ga0070672_1009757611 | 3300005543 | Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYFE* |
| Ga0070686_1003621971 | 3300005544 | Switchgrass Rhizosphere | FTSRMSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0070704_1022154462 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | MWTISGGITTATVAVLAGPGLSGVPGEWFGLALACVFAAVSFALGFYE* |
| Ga0066701_104761912 | 3300005552 | Soil | TTATLAVLAGPGLSGVPGEWFGLAVACLFACIAFALGFYE* |
| Ga0066654_105362522 | 3300005587 | Soil | MWLISGGIVVATLAVLAGPGYDGVPGHWIGLVVAAAFAS |
| Ga0068856_1011441702 | 3300005614 | Corn Rhizosphere | MSAGRIAMWLISGLIAVATIAVLAGPGYDGVPGHWVGLVVAASFIAISFALGLYE* |
| Ga0066903_1058179282 | 3300005764 | Tropical Forest Soil | MWLISAMIVVAMLVVLLGPGYNGLPGQWIGLVVAAAFASIAFALGFYE* |
| Ga0068858_1000224301 | 3300005842 | Switchgrass Rhizosphere | MSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0070716_1009336851 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | AVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0070712_1005603472 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYNGLPGQWIGLVVAVSFASIAFGLGYYE* |
| Ga0075436_1005927461 | 3300006914 | Populus Rhizosphere | AGRSGRFTSRMSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0066710_1022801622 | 3300009012 | Grasslands Soil | MWVISGGITTATIAVLAGPGLSGVPGEWFGLAVACLFVCVSFALGFYE |
| Ga0105240_103037062 | 3300009093 | Corn Rhizosphere | MSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLAAVSFASIAFGLGYYE* |
| Ga0105245_104632941 | 3300009098 | Miscanthus Rhizosphere | ISGGIVVATLAVLAGPGYHGMPGQWIGLLVAVSFASIAFGLGYFE* |
| Ga0066709_1004184542 | 3300009137 | Grasslands Soil | MWVISGGITTATIAVLAGPGLSGVPGEWFGLAAACLFACISFALGFYE* |
| Ga0105248_103896973 | 3300009177 | Switchgrass Rhizosphere | MSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYFE* |
| Ga0126310_115462451 | 3300010044 | Serpentine Soil | MSAGRFFMWVISGGIVVATLAVLAGPGYDGVPGQWLGLLVAVSFASIAFGLGYYE* |
| Ga0127503_107396672 | 3300010154 | Soil | FFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0134125_100306574 | 3300010371 | Terrestrial Soil | MSAGRFFMWVISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0134125_101841774 | 3300010371 | Terrestrial Soil | GRFFMWVISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0134126_121726312 | 3300010396 | Terrestrial Soil | FFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLAAVSFASIAFGLGYYE* |
| Ga0120152_10200041 | 3300012011 | Permafrost | MWVISGGIATATVAVLAGPGLSGVPGHWLGLAIACLFSGVAFGLGFYE* |
| Ga0137380_108754151 | 3300012206 | Vadose Zone Soil | MWVISGGITTATIAVLAGPGLSGVPGEWFGLAVACLFV |
| Ga0137387_111882611 | 3300012349 | Vadose Zone Soil | MWVISGGSTTATIAVLAGPGLSGVPGEWFGLAVACLFVCVSFALGFYE* |
| Ga0164298_100550461 | 3300012955 | Soil | MSAGRFFMWLISGGIVVATLAVLAGPGYHGGPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0164302_103076472 | 3300012961 | Soil | MWVISGGIVVANVAVLAGPGYDGIPGQWIGLLVAVAFASIAFALGYYE* |
| Ga0164304_100051445 | 3300012986 | Soil | MSAGRFFMWLISGGIVVATLAVLAGPGYSGVPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0164307_103728191 | 3300012987 | Soil | MSAGRFFMWLISGGIVVATLAVLAGPGYNGIPGQWIGLLVAVSFASIAFGLGYYE* |
| Ga0163162_107974372 | 3300013306 | Switchgrass Rhizosphere | MSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGSFE* |
| Ga0163162_124912451 | 3300013306 | Switchgrass Rhizosphere | GGIVVATVAVLAGPGYDGIPGQWIGLLVAVAFASIAFALGYYE* |
| Ga0182008_109654241 | 3300014497 | Rhizosphere | ETSARFGEAASGRPLVDSAAMSAGRIAMWLISGLIVVATLAVLAGPGYDGVPGHWIGLLVATSFVVISFALGLYE* |
| Ga0157377_109055292 | 3300014745 | Miscanthus Rhizosphere | MSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLAAVSFASIAVGLGYYE* |
| Ga0157379_103567602 | 3300014968 | Switchgrass Rhizosphere | MWTISGGITTATVAVLAGPGLSGVPGEWFGLAVACVFAAVSFALGFYE* |
| Ga0187823_101060212 | 3300017993 | Freshwater Sediment | MWLISGLIVVATVAVLAGPGYDGVPGHWVGLLVATSFVVISFALGLYE |
| Ga0066667_101745972 | 3300018433 | Grasslands Soil | MWVISGGITTATIAVLAGPGLSGVPGEWFGLAVACLFACISFALGFYE |
| Ga0066667_121311842 | 3300018433 | Grasslands Soil | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFATIAFGLGYYE |
| Ga0066662_100098375 | 3300018468 | Grasslands Soil | MSAGRIAMWLISGLIVVAVVAVLAGPGYNGVPGHWIGLVVAASFVAISFALGLYE |
| Ga0066662_105458462 | 3300018468 | Grasslands Soil | MWVISGGITTATLAVLAGPGLSGVPGEWFGLAVACLFACIAFALGFYE |
| Ga0173479_105863521 | 3300019362 | Soil | GGIVVATLAVLAGPGYHGVPGQWIGLLAAVSFASIAFGLGYYE |
| Ga0173479_106734501 | 3300019362 | Soil | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0193695_11290021 | 3300021418 | Soil | SAGRAAMWTISGGITTATVAVLAGPGLSGVPGEWFGLAVACVFAAVSFALGFYE |
| Ga0182009_106499722 | 3300021445 | Soil | MWLISGGIVVATLAVLAGPGYDGVPGHWIGLVVAAAFASIAF |
| Ga0207692_102392762 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MWLISAGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0207680_100547374 | 3300025903 | Switchgrass Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGCYE |
| Ga0207643_101086522 | 3300025908 | Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLAAVSFASIAFGLGYYE |
| Ga0207707_104193962 | 3300025912 | Corn Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGL |
| Ga0207693_104061651 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYNGIPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0207693_104786392 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYNGLPGQWIGLVVAVSFASIAFGLGYYE |
| Ga0207663_103627302 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | GRFTSRMSAGRFFMWLISGGIVVATLAVLAGPGYNGIPGQWIGLLVAVSFASIAFGLGYY |
| Ga0207660_107560101 | 3300025917 | Corn Rhizosphere | SGRFTSRMSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0207650_108514781 | 3300025925 | Switchgrass Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASI |
| Ga0207700_108265492 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MWVISGGIVVAMVAVLAGPGFDGVPGHWIGLTVAVAFAIIAFSLGYYE |
| Ga0207664_102137972 | 3300025929 | Agricultural Soil | MWLISGLIVVATVAVLAGPGYDGVPGHWVGLVVAASFVVISFALGLYE |
| Ga0207686_109424471 | 3300025934 | Miscanthus Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVS |
| Ga0207686_113309301 | 3300025934 | Miscanthus Rhizosphere | AGRSGRFTNRMSAGRFFMWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0207658_108952652 | 3300025986 | Switchgrass Rhizosphere | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFA |
| Ga0207703_123695752 | 3300026035 | Switchgrass Rhizosphere | GIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYFE |
| Ga0207702_120817412 | 3300026078 | Corn Rhizosphere | AAMWVISGGIVVATVAVLAGPGYDGIPGQWIGLLVAVAFASIAFALGYYE |
| Ga0209265_11630051 | 3300026308 | Soil | MWLISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSF |
| Ga0208404_10056141 | 3300026855 | Soil | ISGGIVVATLAVLAGPGYHGVPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0307288_100889722 | 3300028778 | Soil | MWLISGLILVATVAVLAGPGYDGVPGHWVGLVVAASFVVISFALGLYE |
| Ga0307284_102379631 | 3300028799 | Soil | MWTISGGITTATVAVLAGPGLSGVPGEWFWLAVACVFAAVSFALGFYE |
| Ga0307310_107480262 | 3300028824 | Soil | MWTISGGITTATVAVLAGPGLSGVPGEWFGLAVACVFAAVSFALG |
| Ga0307498_100714761 | 3300031170 | Soil | TLAVLAGPGYNGVPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0307498_100925922 | 3300031170 | Soil | MWVISGGITIAIVAVLAGPGPSGVPGEWFGLAVACLFAGIAFALGFYE |
| Ga0307497_102201011 | 3300031226 | Soil | MWLISGGIVVATLAVLAGPGYNGVPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0307506_101819662 | 3300031366 | Soil | MWLISGGIVVATLAVLAGPGYNGMPGQWIGLLVAVSFASIAFGLGYYE |
| Ga0318534_100803973 | 3300031544 | Soil | MSAGRAAMWLISAMIVLAMAAVLIGPGIDGVPRGWFGLAVAAAFASIAFALGFYE |
| Ga0318561_104925292 | 3300031679 | Soil | MIVLAMAAVLIGPGIEGVPRGWFGLAVAAAFASIAFALGFYE |
| Ga0307468_1014350322 | 3300031740 | Hardwood Forest Soil | MWVISGGITIAIVAVLAGPGLSGLPGEWFGLAVACLFAGIAFALGFYE |
| Ga0306918_104353542 | 3300031744 | Soil | AMIVLAMAAVLIGPGIDGVPRGWFGLAVAAAFASIAFALGFYE |
| Ga0318492_102062372 | 3300031748 | Soil | MSAGRAAMWLISAMIVLAMAAVLIGPGIEGVPRGWFGLAVAAAFASIAFALGFYE |
| Ga0318546_101779283 | 3300031771 | Soil | MWLISAMIVLAMAAVLIGPGIEGVPRGWFGLAVAAAFASIAFALGFYE |
| Ga0318566_102843842 | 3300031779 | Soil | MIVLAMAAVLIGPGIDGVPRGWFGLAVAAAFASIAFALGFYE |
| Ga0318547_101387143 | 3300031781 | Soil | AAVLIGPGIDGVPRGWFGLAVAAAFASIAFALGFYE |
| Ga0318550_102876142 | 3300031797 | Soil | MWLISAMIVLAMAAVLIGPGIDGVPRGWFGLAVAAAFASIAFALGFYE |
| Ga0308175_1019729201 | 3300031938 | Soil | MWVISGGIVVATVAVLAGPGYDGIPGQWIGLLVAVAFASIAFALGYYE |
| Ga0308175_1030879322 | 3300031938 | Soil | MWLISGGIVVATLAVLAGPGYDGVPGQWLGLLVAVSFASIAFGLGYYE |
| Ga0308173_101852063 | 3300032074 | Soil | MSAGRIAMWLISGLIVVATIAVLAGPGYDGVPGHWVGLVVAASFVAISFALGLYE |
| Ga0334722_101592292 | 3300033233 | Sediment | MWVISGTIATATVAVLAGPGVDGLPAGWLGLAVACLFSGFAFALGFYE |
| Ga0372943_0004368_6064_6231 | 3300034268 | Soil | MSAGRIAMWLISGLVVVATIGVLAGPGYDGVPGHWIGLVVAASFAVISFSLGYYE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |