Sample 3300026786

Basic Information
IMG/M Taxon OID	3300026786 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072073 \| Ga0207497
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-11 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0095510 | Gp0072073 | Ga0207497

Sample Name

Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-11 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	26728324
Sequencing Scaffolds	31
Novel Protein Genes	34
Associated Families	34

Dataset Contents

Total Genome Size

26728324

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Pyrococcus → Pyrococcus furiosus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium

All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Pyrococcus → Pyrococcus furiosus

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → agricultural field → agricultural soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

Wisconsin, United States

Coordinates

Lat. (^o)

43.3

Long. (^o)

-89.38

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000268	Metagenome / Metatranscriptome	1411	Y
F001033	Metagenome / Metatranscriptome	799	Y
F001757	Metagenome / Metatranscriptome	641	N
F002103	Metagenome / Metatranscriptome	593	Y
F002615	Metagenome / Metatranscriptome	543	Y
F003121	Metagenome / Metatranscriptome	506	Y
F004121	Metagenome / Metatranscriptome	452	Y
F007503	Metagenome / Metatranscriptome	350	Y
F008734	Metagenome / Metatranscriptome	329	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207497_100104	Not Available	1303	Open in IMG/M
Ga0207497_100388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	972	Open in IMG/M
Ga0207497_100404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	962	Open in IMG/M
Ga0207497_100538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	902	Open in IMG/M
Ga0207497_100755	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
Ga0207497_100853	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	808	Open in IMG/M
Ga0207497_100980	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	783	Open in IMG/M
Ga0207497_101061	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	770	Open in IMG/M
Ga0207497_101809	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
Ga0207497_101855	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207497_100104	Ga0207497_1001041	F080568	TSGQGLRRHHIPVGSLPMAATPSIKVVKSFTYRGQTRLFSNRYHFNGGLPPDSAHWTTLSDAIVTAEKAIYFAPQIVHTYGYAAGSEVPIFSKAYTTAGTLALGTQERCPGDCAGLIRYATTARTSKNHPVYLFNYYHGVVAVGASFDDVGAVQASAYSTYAGLWIAGFSDGATTYNRAGPNGASAVGSLVEPYITHRDLPR
Ga0207497_100388	Ga0207497_1003882	F001033	MKFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIATLMIAVFIFQMLGVTSVVHAERPDSTAGTSSAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGDYNLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGKAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207497_100404	Ga0207497_1004041	F004121	TSVKGKQKVLAAAALWGGCAWFVSMDVDFLVTHLQSAPHWLLQGFRALFMGVSVAIGYVVYRKYLLEMQTRSEKYAEIRAQIRRMLADLLTVSDEDLIHQLQRTIQRIEQLLKRHDPEAARHGAEPKKPKVA
Ga0207497_100538	Ga0207497_1005382	F089126	ATGRRAVELAVEGLTPRQILTAEAFDTSPMEIAPPWNQAIMTPSLLRWRIVQGQNTIRPWETSVDFRTFLLPINLFDFVYAPGTFQNKAGRRGRYEFYLAHSFDTRTLVNGSYVLQIEALDEQENAGQASFAFTVTNPPS
Ga0207497_100755	Ga0207497_1007552	F052220	DSASGPDDSAQLFTLRDRRSIRSCVNEHASDFPAGATQRPELPSGSERQIHRGGTLPSEVQSQAQSLPLVCEEQLPKLPSDLERVVYAGRVLLIDGKGQVLDMFYLDQNQ
Ga0207497_100853	Ga0207497_1008531	F009929	MKTIILILVAIATMSFAMCLDAQGQRLSLPEGQADSRTPLPAQFRVSVEKGIITLRDVNSGKVLGRTTFERWGVVTPTQDKLRHVALDVTAAVVAGNGSRERIVNPFHKVYAVADHKKGKAAYATMTLEHNLAFVLSSDTQTNGRYEALIENRP
Ga0207497_100980	Ga0207497_1009802	F079285	MCGDRRPVSQLHSADDVPELMRRAMRSLVRAEELARDLARVSDVERESLHAGFLALVRRYVLQLREEGEQPTRAAARLRDELDDSLMPFSVRHHCSALIDEAETSVR
Ga0207497_101061	Ga0207497_1010611	F039751	VLGYPQRSCFEAKTIGKPPIPIVLIDYLRAAFRRAAQRAFINCESLLRPAGVSPPFLAEGAAFVPPDFLLAAQRAFISSDSFLRPAAVSAPFFLGGAGFVPPFSLAQRALAAAESLARVEGEK
Ga0207497_101612	Ga0207497_1016122	F000136	ILAHQAAAMEKAGHTVQKAIGRKAMDEALKKSTFDLVVLGATMTRNDRHHLPYMAKKANAEISVLVLHADGTRHPYVDGCVDTGASIENILNRIESMNIAGMMPAAKAAAAGK
Ga0207497_101809	Ga0207497_1018092	F008734	SGVLHGFSSQGDAARDGATDLGQKDCHHCIDGVEERSRLRRPTSETTNSLSVSDRVRSLLETFSGGDCRVLETLWFESESQPVS
Ga0207497_101855	Ga0207497_1018552	F022723	PDANELWQKALVKIPAQKAFVRNSAAAAHVLGIEGRNFQLGFAPGDKAMMDILGTQANRKFLETLLHEITGTDWSVKLTVNEELPSRQAPASEGSRPENFKEDPLIQEAIGLFNAQIVPE
Ga0207497_102322	Ga0207497_1023222	F023299	SYGVQMTRKEVREGLERLLTSESTESPDEVLLRDVPRRNLHVA
Ga0207497_102420	Ga0207497_1024201	F097561	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHM
Ga0207497_102452	Ga0207497_1024521	F035790	SSAAPNNTSTDISGTYVLADVGGNKLPTSIYQGPFPVNGQKIDARIDVVGSTLLLDATRYTLRIQFQVAAQGQTVPLSVIDSGTYNKTAEVLSFASADQRVGRLAGSIQSGDLKVSIDLVGDGYPPTYLFRK
Ga0207497_102486	Ga0207497_1024861	F007503	LLSSLSVAEANNSARLDREKNASLSKALVETIVANLCLVVLTACLFGLVRYHGQVLEQETAESKQALAIRELQLEKLTFALSNQARSKTSAIEANARLLLDNYGGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNRDAKAA
Ga0207497_102557	Ga0207497_1025571	F002103	MSTDEPFRTDYELLKGVDYIFVSLDRNLSGEECHELAEKYFETHEAMTLPGQALRIDLRPAFRKPLADVTPKFRAVSIGHTFTPQR
Ga0207497_102724	Ga0207497_1027241	F022455	LGIAIAAVLAWIVPAAYAGVPDVNQSFYVPQAGNTTTPLEGASSPKSFSFFRGCPNNDGASYANNSRVKVVVRDANGNGIPGVSASDICLLFNGGTPIQGFSGVGADSVVANNQYSVGAVCPDVRCVNADDQSDASGVAYITFTGSVPGTPGVGQRNTGRKWGHYDTEIPVYVLGFKIQGRLTTASANGSYALQIKSFDVVGGTTA
Ga0207497_102797	Ga0207497_1027972	F069419	KGKTKKQSAKATLAEVIKEMAKPRVAKSARERVVRRQL
Ga0207497_102904	Ga0207497_1029041	F000268	MRVVAVMLLLSAGIAAEAMSYSFVCKASGRLGGPIRFEFYGDSTTRPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIKPQKLIAGRVYRGSATDEHGGSSGVTFGFDKNGRMTFPDSFDQ
Ga0207497_103314	Ga0207497_1033141	F050265	SLISPVSFMSTLATDTMADEAQEVQPTDVPAGGKTVDLSTGALTYKLTEMFRQPVGNDLDLIVKYQSANVANTNQAYQDNVAVMKAVLQKWPELREAFAGIVARGVDATGRDYGTLMAMKDIK
Ga0207497_103332	Ga0207497_1033321	F082749	MHAAGELGCQRLINHAVTLDAGLSFERLRHDIHPEVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNG
Ga0207497_103356	Ga0207497_1033561	F025757	HRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALGIVAHCAMWLAMHDEEILIRLVASTLVYLGLLKFSPNAARVWLCAGGALAGAFLLGTTALSLLMSFPGRWSVFGLSIGATLVFLASGLLIGFWVVHRWTEPAQRRESQPGQKA
Ga0207497_103472	Ga0207497_1034721	F100057	DRVYYVFKYPNGSKVLLLGVWDRDPVAEMVACSCPAA
Ga0207497_104133	Ga0207497_1041332	F021796	VSLRSRLFVGISATVLVSLVVTVVAGALLTRRSLEHASVRALERQVELVLAQRQANPGRGTEQDLGQFLATDEQRLAIVTPAQAELLLPEDGAARLRTVGEASGSVDVRGKR
Ga0207497_104351	Ga0207497_1043511	F002615	EPDWGAWFPSAYATKFPTLLWQGGSTGSPYGYFYANLSQNAFIPKGQDASATGNWEHFSDAAATSLLNQWKVTFAPKKQHQIATKLEKAFLQHLPIVPLFIGPRWSTYSTRYFHCFANAKNFYGDPIFTTFPDNILSFTRICPGGKAGI
Ga0207497_104395	Ga0207497_1043952	F016827	FVVKPVNAMLRRFRGPVEEGMPDEERRHQELLAALKGSRA
Ga0207497_104618	Ga0207497_1046182	F003121	QTIFEMETIICGVTGKNTFSLTAQGVGIATGTATATIGGMATNAPSLMDRG
Ga0207497_104623	Ga0207497_1046231	F065048	YDVLPAMAADLVQRKVAAIIAIGPSAVIAAKAATQPSRPWLVFFTEPYQAGGWRSEEVYRDLLPRLWALSQASQLKLVFKIHPFESVRGHRRILRKYLPEQEPAIEVIAEAPSPELWRNIRLALTVQSTVALQCAALGIPVFLCSWIRDTTSGYLEQFARFGIGQVLESPANLSEIPRLL
Ga0207497_104737	Ga0207497_1047371	F017214	MGSKNPPPTFYVSALRSTVEQAFEATWTALQARDPFRDFERDYELKATLRRKLMGLAVDGVTDPIELREWALEGLP
Ga0207497_105358	Ga0207497_1053581	F001757	MMRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSISAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGRPDRPDRTKVV
Ga0207497_105632	Ga0207497_1056322	F050719	MLDSVGEKCYLHIRAARIFVMQLELLEIRRLVALCHNEAPIV
Ga0207497_105815	Ga0207497_1058151	F100479	MSVETKKMANSIVTASSSFGDRVKAWPERIRTFYNDV
Ga0207497_106143	Ga0207497_1061432	F043582	IQKMPLLFYFPLIVWMGMLEAMQDEMRVPATAKPRR
Ga0207497_106167	Ga0207497_1061671	F019571	MKLDTSNRRDWQGFTRILEVMTFLDEIDSRCKEDVHEAVDSFCELPPNPGQTMSMEEVVFWAGVASGIEYSRHADEGTIDPVSTEKMLVFSSIFAHSVKNAVVDLALGDLENEDNKPWKKLDTQMGR

Showing 1 to 34 of 34 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026786: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-11 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences