3300026786: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-11 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026786
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072073 | Ga0207497
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-11 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26728324
• Sequencing Scaffolds: 31
• Novel Protein Genes: 34
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Pyrococcus → Pyrococcus furiosus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000268	Metagenome / Metatranscriptome	1411	Y
F001033	Metagenome / Metatranscriptome	799	Y
F001757	Metagenome / Metatranscriptome	641	N
F002103	Metagenome / Metatranscriptome	593	Y
F002615	Metagenome / Metatranscriptome	543	Y
F003121	Metagenome / Metatranscriptome	506	Y
F004121	Metagenome / Metatranscriptome	452	Y
F007503	Metagenome / Metatranscriptome	350	Y
F008734	Metagenome / Metatranscriptome	329	Y
F009929	Metagenome / Metatranscriptome	311	Y
F016827	Metagenome / Metatranscriptome	244	Y
F017214	Metagenome / Metatranscriptome	242	Y
F019571	Metagenome / Metatranscriptome	229	Y
F021796	Metagenome / Metatranscriptome	217	Y
F022455	Metagenome / Metatranscriptome	214	Y
F022723	Metagenome / Metatranscriptome	213	Y
F023299	Metagenome / Metatranscriptome	210	Y
F025757	Metagenome	200	N
F035790	Metagenome	171	N
F039751	Metagenome / Metatranscriptome	163	Y
F043582	Metagenome / Metatranscriptome	156	Y
F050265	Metagenome / Metatranscriptome	145	Y
F050719	Metagenome / Metatranscriptome	145	Y
F052220	Metagenome / Metatranscriptome	143	Y
F065048	Metagenome	128	Y
F069419	Metagenome / Metatranscriptome	124	Y
F079285	Metagenome	116	N
F080568	Metagenome / Metatranscriptome	115	Y
F082749	Metagenome / Metatranscriptome	113	Y
F089126	Metagenome / Metatranscriptome	109	Y
F097561	Metagenome / Metatranscriptome	104	N
F100057	Metagenome / Metatranscriptome	103	Y
F100479	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207497_100104	Not Available	1303
Ga0207497_100388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	972
Ga0207497_100404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	962
Ga0207497_100538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	902
Ga0207497_100755	All Organisms → cellular organisms → Bacteria → Acidobacteria	832
Ga0207497_100853	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	808
Ga0207497_100980	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	783
Ga0207497_101061	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	770
Ga0207497_101809	All Organisms → cellular organisms → Bacteria → Acidobacteria	681
Ga0207497_101855	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677
Ga0207497_102322	All Organisms → cellular organisms → Bacteria	644
Ga0207497_102420	Not Available	637
Ga0207497_102452	Not Available	636
Ga0207497_102557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629
Ga0207497_102724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	619
Ga0207497_102797	All Organisms → cellular organisms → Bacteria	614
Ga0207497_102904	All Organisms → cellular organisms → Bacteria	608
Ga0207497_103314	All Organisms → cellular organisms → Bacteria	589
Ga0207497_103356	Not Available	587
Ga0207497_103472	Not Available	582
Ga0207497_104133	All Organisms → cellular organisms → Bacteria	557
Ga0207497_104351	All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Pyrococcus → Pyrococcus furiosus	549
Ga0207497_104395	Not Available	548
Ga0207497_104618	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542
Ga0207497_104623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542
Ga0207497_104737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	538
Ga0207497_105358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521
Ga0207497_105632	Not Available	514
Ga0207497_105815	Not Available	509
Ga0207497_106143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	501
Ga0207497_106167	All Organisms → cellular organisms → Bacteria → Acidobacteria	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207497_100104	Ga0207497_1001041	F080568	TSGQGLRRHHIPVGSLPMAATPSIKVVKSFTYRGQTRLFSNRYHFNGGLPPDSAHWTTLSDAIVTAEKAIYFAPQIVHTYGYAAGSEVPIFSKAYTTAGTLALGTQERCPGDCAGLIRYATTARTSKNHPVYLFNYYHGVVAVGASFDDVGAVQASAYSTYAGLWIAGFSDGATTYNRAGPNGASAVGSLVEPYITHRDLPR
Ga0207497_100388	Ga0207497_1003882	F001033	MKFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIATLMIAVFIFQMLGVTSVVHAERPDSTAGTSSAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGDYNLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGKAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207497_100404	Ga0207497_1004041	F004121	TSVKGKQKVLAAAALWGGCAWFVSMDVDFLVTHLQSAPHWLLQGFRALFMGVSVAIGYVVYRKYLLEMQTRSEKYAEIRAQIRRMLADLLTVSDEDLIHQLQRTIQRIEQLLKRHDPEAARHGAEPKKPKVA
Ga0207497_100538	Ga0207497_1005382	F089126	ATGRRAVELAVEGLTPRQILTAEAFDTSPMEIAPPWNQAIMTPSLLRWRIVQGQNTIRPWETSVDFRTFLLPINLFDFVYAPGTFQNKAGRRGRYEFYLAHSFDTRTLVNGSYVLQIEALDEQENAGQASFAFTVTNPPS
Ga0207497_100755	Ga0207497_1007552	F052220	DSASGPDDSAQLFTLRDRRSIRSCVNEHASDFPAGATQRPELPSGSERQIHRGGTLPSEVQSQAQSLPLVCEEQLPKLPSDLERVVYAGRVLLIDGKGQVLDMFYLDQNQ
Ga0207497_100853	Ga0207497_1008531	F009929	MKTIILILVAIATMSFAMCLDAQGQRLSLPEGQADSRTPLPAQFRVSVEKGIITLRDVNSGKVLGRTTFERWGVVTPTQDKLRHVALDVTAAVVAGNGSRERIVNPFHKVYAVADHKKGKAAYATMTLEHNLAFVLSSDTQTNGRYEALIENRP
Ga0207497_100980	Ga0207497_1009802	F079285	MCGDRRPVSQLHSADDVPELMRRAMRSLVRAEELARDLARVSDVERESLHAGFLALVRRYVLQLREEGEQPTRAAARLRDELDDSLMPFSVRHHCSALIDEAETSVR
Ga0207497_101061	Ga0207497_1010611	F039751	VLGYPQRSCFEAKTIGKPPIPIVLIDYLRAAFRRAAQRAFINCESLLRPAGVSPPFLAEGAAFVPPDFLLAAQRAFISSDSFLRPAAVSAPFFLGGAGFVPPFSLAQRALAAAESLARVEGEK
Ga0207497_101612	Ga0207497_1016122	F000136	ILAHQAAAMEKAGHTVQKAIGRKAMDEALKKSTFDLVVLGATMTRNDRHHLPYMAKKANAEISVLVLHADGTRHPYVDGCVDTGASIENILNRIESMNIAGMMPAAKAAAAGK
Ga0207497_101809	Ga0207497_1018092	F008734	SGVLHGFSSQGDAARDGATDLGQKDCHHCIDGVEERSRLRRPTSETTNSLSVSDRVRSLLETFSGGDCRVLETLWFESESQPVS
Ga0207497_101855	Ga0207497_1018552	F022723	PDANELWQKALVKIPAQKAFVRNSAAAAHVLGIEGRNFQLGFAPGDKAMMDILGTQANRKFLETLLHEITGTDWSVKLTVNEELPSRQAPASEGSRPENFKEDPLIQEAIGLFNAQIVPE
Ga0207497_102322	Ga0207497_1023222	F023299	SYGVQMTRKEVREGLERLLTSESTESPDEVLLRDVPRRNLHVA
Ga0207497_102420	Ga0207497_1024201	F097561	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHM
Ga0207497_102452	Ga0207497_1024521	F035790	SSAAPNNTSTDISGTYVLADVGGNKLPTSIYQGPFPVNGQKIDARIDVVGSTLLLDATRYTLRIQFQVAAQGQTVPLSVIDSGTYNKTAEVLSFASADQRVGRLAGSIQSGDLKVSIDLVGDGYPPTYLFRK
Ga0207497_102486	Ga0207497_1024861	F007503	LLSSLSVAEANNSARLDREKNASLSKALVETIVANLCLVVLTACLFGLVRYHGQVLEQETAESKQALAIRELQLEKLTFALSNQARSKTSAIEANARLLLDNYGGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNRDAKAA
Ga0207497_102557	Ga0207497_1025571	F002103	MSTDEPFRTDYELLKGVDYIFVSLDRNLSGEECHELAEKYFETHEAMTLPGQALRIDLRPAFRKPLADVTPKFRAVSIGHTFTPQR
Ga0207497_102724	Ga0207497_1027241	F022455	LGIAIAAVLAWIVPAAYAGVPDVNQSFYVPQAGNTTTPLEGASSPKSFSFFRGCPNNDGASYANNSRVKVVVRDANGNGIPGVSASDICLLFNGGTPIQGFSGVGADSVVANNQYSVGAVCPDVRCVNADDQSDASGVAYITFTGSVPGTPGVGQRNTGRKWGHYDTEIPVYVLGFKIQGRLTTASANGSYALQIKSFDVVGGTTA
Ga0207497_102797	Ga0207497_1027972	F069419	KGKTKKQSAKATLAEVIKEMAKPRVAKSARERVVRRQL
Ga0207497_102904	Ga0207497_1029041	F000268	MRVVAVMLLLSAGIAAEAMSYSFVCKASGRLGGPIRFEFYGDSTTRPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIKPQKLIAGRVYRGSATDEHGGSSGVTFGFDKNGRMTFPDSFDQ
Ga0207497_103314	Ga0207497_1033141	F050265	SLISPVSFMSTLATDTMADEAQEVQPTDVPAGGKTVDLSTGALTYKLTEMFRQPVGNDLDLIVKYQSANVANTNQAYQDNVAVMKAVLQKWPELREAFAGIVARGVDATGRDYGTLMAMKDIK
Ga0207497_103332	Ga0207497_1033321	F082749	MHAAGELGCQRLINHAVTLDAGLSFERLRHDIHPEVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNG
Ga0207497_103356	Ga0207497_1033561	F025757	HRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALGIVAHCAMWLAMHDEEILIRLVASTLVYLGLLKFSPNAARVWLCAGGALAGAFLLGTTALSLLMSFPGRWSVFGLSIGATLVFLASGLLIGFWVVHRWTEPAQRRESQPGQKA
Ga0207497_103472	Ga0207497_1034721	F100057	DRVYYVFKYPNGSKVLLLGVWDRDPVAEMVACSCPAA
Ga0207497_104133	Ga0207497_1041332	F021796	VSLRSRLFVGISATVLVSLVVTVVAGALLTRRSLEHASVRALERQVELVLAQRQANPGRGTEQDLGQFLATDEQRLAIVTPAQAELLLPEDGAARLRTVGEASGSVDVRGKR
Ga0207497_104351	Ga0207497_1043511	F002615	EPDWGAWFPSAYATKFPTLLWQGGSTGSPYGYFYANLSQNAFIPKGQDASATGNWEHFSDAAATSLLNQWKVTFAPKKQHQIATKLEKAFLQHLPIVPLFIGPRWSTYSTRYFHCFANAKNFYGDPIFTTFPDNILSFTRICPGGKAGI
Ga0207497_104395	Ga0207497_1043952	F016827	FVVKPVNAMLRRFRGPVEEGMPDEERRHQELLAALKGSRA
Ga0207497_104618	Ga0207497_1046182	F003121	QTIFEMETIICGVTGKNTFSLTAQGVGIATGTATATIGGMATNAPSLMDRG
Ga0207497_104623	Ga0207497_1046231	F065048	YDVLPAMAADLVQRKVAAIIAIGPSAVIAAKAATQPSRPWLVFFTEPYQAGGWRSEEVYRDLLPRLWALSQASQLKLVFKIHPFESVRGHRRILRKYLPEQEPAIEVIAEAPSPELWRNIRLALTVQSTVALQCAALGIPVFLCSWIRDTTSGYLEQFARFGIGQVLESPANLSEIPRLL
Ga0207497_104737	Ga0207497_1047371	F017214	MGSKNPPPTFYVSALRSTVEQAFEATWTALQARDPFRDFERDYELKATLRRKLMGLAVDGVTDPIELREWALEGLP
Ga0207497_105358	Ga0207497_1053581	F001757	MMRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSISAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGRPDRPDRTKVV
Ga0207497_105632	Ga0207497_1056322	F050719	MLDSVGEKCYLHIRAARIFVMQLELLEIRRLVALCHNEAPIV
Ga0207497_105815	Ga0207497_1058151	F100479	MSVETKKMANSIVTASSSFGDRVKAWPERIRTFYNDV
Ga0207497_106143	Ga0207497_1061432	F043582	IQKMPLLFYFPLIVWMGMLEAMQDEMRVPATAKPRR
Ga0207497_106167	Ga0207497_1061671	F019571	MKLDTSNRRDWQGFTRILEVMTFLDEIDSRCKEDVHEAVDSFCELPPNPGQTMSMEEVVFWAGVASGIEYSRHADEGTIDPVSTEKMLVFSSIFAHSVKNAVVDLALGDLENEDNKPWKKLDTQMGR