Metagenome / Metatranscriptome Family F097561

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097561
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	144 residues
Representative Sequence	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Number of Associated Samples	90
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	45.19 %
% of genes near scaffold ends (potentially truncated)	67.31 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.769 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.539 % of family members)
Environment Ontology (ENVO)	Unclassified (51.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.923 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 10.00% β-sheet: 28.12% Coil/Unstructured: 61.88%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00330	Aconitase	8.65
PF01522	Polysacc_deac_1	7.69
PF00694	Aconitase_C	6.73
PF03551	PadR	2.88
PF00375	SDF	2.88
PF12697	Abhydrolase_6	1.92
PF00561	Abhydrolase_1	1.92
PF03737	RraA-like	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	7.69
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.88
COG0684	RNA degradosome component RraA (regulator of RNase E activity)	Translation, ribosomal structure and biogenesis [J]	0.96

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.77 %
Unclassified	root	N/A	44.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.77 %
Unclassified	root	N/A	44.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.77 %
Unclassified	root	N/A	44.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	21.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	21.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.69 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	20.19 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.69 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5.77 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	20.19 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.69 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	3.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	20.19 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.69 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	3.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	11.54 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	7.69 %
Caballeronia calidae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	3.85 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	11.54 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7.69 %
Caballeronia calidae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	3.85 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	1.92 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.92 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	11.54 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7.69 %
Caballeronia calidae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	3.85 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	1.92 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.92 %
Streptomyces sp. LaPpAH-202	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. LaPpAH-202	0.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001976\|JGI24752J21851_1027923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	742	Open in IMG/M
3300003324\|soilH2_10404079	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300004114\|Ga0062593_102241182	Not Available	613	Open in IMG/M
3300005093\|Ga0062594_103384987	Not Available	501	Open in IMG/M
3300005290\|Ga0065712_10077634	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3463	Open in IMG/M
3300005328\|Ga0070676_10263361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	1155	Open in IMG/M
3300005330\|Ga0070690_101396712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. LaPpAH-202	563	Open in IMG/M
3300005331\|Ga0070670_101035672	Not Available	747	Open in IMG/M
3300005335\|Ga0070666_10618485	Not Available	791	Open in IMG/M
3300005339\|Ga0070660_101606378	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005340\|Ga0070689_100163615	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1800	Open in IMG/M
3300005343\|Ga0070687_100636872	Not Available	737	Open in IMG/M
3300005344\|Ga0070661_100880155	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005353\|Ga0070669_101852842	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	527	Open in IMG/M
3300005364\|Ga0070673_100237504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1583	Open in IMG/M
3300005365\|Ga0070688_101302288	Not Available	586	Open in IMG/M
3300005365\|Ga0070688_101555596	Not Available	539	Open in IMG/M
3300005367\|Ga0070667_100641589	Not Available	980	Open in IMG/M
3300005436\|Ga0070713_100180985	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1894	Open in IMG/M
3300005439\|Ga0070711_100544475	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300005455\|Ga0070663_100999200	Not Available	727	Open in IMG/M
3300005535\|Ga0070684_100070749	All Organisms → cellular organisms → Bacteria	3071	Open in IMG/M
3300005548\|Ga0070665_101755940	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300005563\|Ga0068855_102522095	Not Available	511	Open in IMG/M
3300005578\|Ga0068854_101457177	Not Available	620	Open in IMG/M
3300005614\|Ga0068856_100018128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6825	Open in IMG/M
3300005842\|Ga0068858_100198195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1898	Open in IMG/M
3300005844\|Ga0068862_101710573	Not Available	637	Open in IMG/M
3300005844\|Ga0068862_102557452	Not Available	522	Open in IMG/M
3300006237\|Ga0097621_100690059	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300006581\|Ga0074048_10970297	Not Available	619	Open in IMG/M
3300006854\|Ga0075425_100132950	All Organisms → cellular organisms → Bacteria	2845	Open in IMG/M
3300006880\|Ga0075429_101015580	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300006969\|Ga0075419_11345501	Not Available	531	Open in IMG/M
3300007076\|Ga0075435_100956827	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	747	Open in IMG/M
3300009093\|Ga0105240_10720611	Not Available	1087	Open in IMG/M
3300009093\|Ga0105240_12422688	Not Available	543	Open in IMG/M
3300009098\|Ga0105245_10027856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4980	Open in IMG/M
3300009101\|Ga0105247_10849910	Not Available	701	Open in IMG/M
3300009101\|Ga0105247_11078282	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300009156\|Ga0111538_13370195	Not Available	555	Open in IMG/M
3300009176\|Ga0105242_10021419	All Organisms → cellular organisms → Bacteria	5076	Open in IMG/M
3300009176\|Ga0105242_10022934	All Organisms → cellular organisms → Bacteria	4916	Open in IMG/M
3300009177\|Ga0105248_10057091	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4381	Open in IMG/M
3300009545\|Ga0105237_11257047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	747	Open in IMG/M
3300009551\|Ga0105238_11572295	Not Available	687	Open in IMG/M
3300009551\|Ga0105238_12469303	Not Available	556	Open in IMG/M
3300009551\|Ga0105238_12853012	Not Available	519	Open in IMG/M
3300009553\|Ga0105249_10148079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	2257	Open in IMG/M
3300010373\|Ga0134128_10213146	All Organisms → cellular organisms → Bacteria	2172	Open in IMG/M
3300010375\|Ga0105239_12020713	Not Available	669	Open in IMG/M
3300010397\|Ga0134124_10551795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	1122	Open in IMG/M
3300010399\|Ga0134127_11900153	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	672	Open in IMG/M
3300012955\|Ga0164298_10900379	Not Available	644	Open in IMG/M
3300012958\|Ga0164299_11245042	Not Available	566	Open in IMG/M
3300012960\|Ga0164301_10401762	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	959	Open in IMG/M
3300012961\|Ga0164302_10324493	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1017	Open in IMG/M
3300012984\|Ga0164309_11032007	Not Available	680	Open in IMG/M
3300012985\|Ga0164308_11381042	Not Available	642	Open in IMG/M
3300012986\|Ga0164304_10176397	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1373	Open in IMG/M
3300012989\|Ga0164305_11053075	Not Available	695	Open in IMG/M
3300013105\|Ga0157369_10097640	All Organisms → cellular organisms → Bacteria → Proteobacteria	3134	Open in IMG/M
3300013296\|Ga0157374_10021447	All Organisms → cellular organisms → Bacteria → Proteobacteria	5747	Open in IMG/M
3300013297\|Ga0157378_11468176	Not Available	726	Open in IMG/M
3300013307\|Ga0157372_11374055	Not Available	814	Open in IMG/M
3300014325\|Ga0163163_11869656	Not Available	660	Open in IMG/M
3300015200\|Ga0173480_10229968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia calidae	999	Open in IMG/M
3300015371\|Ga0132258_10299113	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3957	Open in IMG/M
3300015371\|Ga0132258_11734378	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1575	Open in IMG/M
3300015371\|Ga0132258_11985184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1464	Open in IMG/M
3300015371\|Ga0132258_12820102	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1210	Open in IMG/M
3300015372\|Ga0132256_100521355	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300015373\|Ga0132257_100421201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1626	Open in IMG/M
3300015374\|Ga0132255_100422591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1945	Open in IMG/M
3300015374\|Ga0132255_103244237	Not Available	693	Open in IMG/M
3300019361\|Ga0173482_10268623	Not Available	735	Open in IMG/M
3300021445\|Ga0182009_10052973	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1723	Open in IMG/M
3300021445\|Ga0182009_10159554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1076	Open in IMG/M
3300022880\|Ga0247792_1098300	Not Available	598	Open in IMG/M
3300022898\|Ga0247745_1079772	Not Available	547	Open in IMG/M
3300025913\|Ga0207695_11259366	Not Available	620	Open in IMG/M
3300025913\|Ga0207695_11476903	Not Available	560	Open in IMG/M
3300025918\|Ga0207662_10633169	Not Available	746	Open in IMG/M
3300025924\|Ga0207694_11773580	Not Available	519	Open in IMG/M
3300025925\|Ga0207650_11289830	Not Available	622	Open in IMG/M
3300025927\|Ga0207687_10466108	Not Available	1050	Open in IMG/M
3300025930\|Ga0207701_10371548	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1235	Open in IMG/M
3300025930\|Ga0207701_11611658	Not Available	522	Open in IMG/M
3300025933\|Ga0207706_10437259	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1133	Open in IMG/M
3300025934\|Ga0207686_10050637	All Organisms → cellular organisms → Bacteria	2583	Open in IMG/M
3300025941\|Ga0207711_10710445	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	937	Open in IMG/M
3300025944\|Ga0207661_10338019	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1356	Open in IMG/M
3300025945\|Ga0207679_10525580	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1059	Open in IMG/M
3300025949\|Ga0207667_10109677	All Organisms → cellular organisms → Bacteria	2846	Open in IMG/M
3300025960\|Ga0207651_10129470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	1929	Open in IMG/M
3300026035\|Ga0207703_10180182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	1864	Open in IMG/M
3300026041\|Ga0207639_10109899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2244	Open in IMG/M
3300026078\|Ga0207702_10248995	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300026088\|Ga0207641_10696829	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1000	Open in IMG/M
3300026786\|Ga0207497_102420	Not Available	637	Open in IMG/M
3300026853\|Ga0207443_1009098	Not Available	563	Open in IMG/M
3300031716\|Ga0310813_11716890	Not Available	588	Open in IMG/M
3300031939\|Ga0308174_11263224	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300033412\|Ga0310810_11408355	Not Available	531	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	63.46%
Environmental	Environmental	36.54%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	63.46%
Terrestrial	Environmental → Terrestrial	36.54%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	42.31%
Soil	Environmental → Terrestrial → Soil	36.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.23%
Roots	Host-Associated → Plants → Roots	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.54%
Loam	Environmental → Terrestrial → Soil → Loam	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.69%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	9.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026786	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-11 (SPAdes)	Environmental	Open in IMG/M
3300026853	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5w-12 (SPAdes)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24752J21851_10279231	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	AQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
soilH2_104040791	3300003324	Sugarcane Root And Bulk Soil	MWILRFAIVISAVAARPADAQYSPTHFVPAVEFRDTVATCVPASSPVRAGEHAFTLRFGTIDSAQRIVTGVWGSDGRLLSYSDARGDLRPPFPAEAQRNPRTTIKIDVVRHVALMYNDVDGEQQGSAASDAEGAMESENLGPPRQLLERLRRQCGAP*
Ga0062593_1022411821	3300004114	Soil	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0062594_1033849872	3300005093	Soil	CAQPTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR*
Ga0065712_100776343	3300005290	Miscanthus Rhizosphere	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP*
Ga0070676_102633612	3300005328	Miscanthus Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRSPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0070690_1013967121	3300005330	Switchgrass Rhizosphere	RAVSAGVRCLLVVRYVIHWQVASMRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP
Ga0070670_1010356721	3300005331	Switchgrass Rhizosphere	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKDGRLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP*
Ga0070666_106184852	3300005335	Switchgrass Rhizosphere	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVITAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP*
Ga0070660_1016063781	3300005339	Corn Rhizosphere	AQPTASPEPGERAFSLRFGDADSAARVITAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMDNLGPPRRMLERLRQQCGAP*
Ga0070689_1001636153	3300005340	Switchgrass Rhizosphere	MRSYRLAMLMAVLVAQPVVAQFPPSHFVPAVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP*
Ga0070687_1006368721	3300005343	Switchgrass Rhizosphere	IAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0070661_1008801551	3300005344	Corn Rhizosphere	VVRYVIHWQVASMRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVITAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP*
Ga0070669_1018528421	3300005353	Switchgrass Rhizosphere	PGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR*
Ga0070673_1002375041	3300005364	Switchgrass Rhizosphere	VEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0070688_1013022881	3300005365	Switchgrass Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPR
Ga0070688_1015555961	3300005365	Switchgrass Rhizosphere	TASPEPGERAFSLRFGDADSAARVITAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP*
Ga0070667_1006415892	3300005367	Switchgrass Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0070713_1001809853	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRYIRFVALLAVLAAYPLGAQLPPRYFVPVVEFRDTVATCAEPPANLPAGERGYTLRFGSADSAERIITAIWGRDGKLVRYSDTRGDLRPPFPANAQRSPKTTITIDVPRQVVLMYNDVGGEQQGSAASDSDGALDSDNLGPPRQMLERLRRQCGAP*
Ga0070711_1005444751	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RGYTLRFGSADSAERIITAIWGRDGKLVRYSDTRGDLRPPFPANAQRSPKTTITIDVPRQVVLMYNDVGGEQQGSAASDSDGALDSDNLGPPRQMLERLRRQCGAP*
Ga0070663_1009992001	3300005455	Corn Rhizosphere	LIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0070684_1000707491	3300005535	Corn Rhizosphere	LVVRYVIHWQVASMRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVITAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP*
Ga0070665_1017559402	3300005548	Switchgrass Rhizosphere	VRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGRGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP*
Ga0068855_1025220952	3300005563	Corn Rhizosphere	MRYVRLAALMALAFAPRAHAQFSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTATWGKDGRLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGA
Ga0068854_1014571771	3300005578	Corn Rhizosphere	MRYFRFAVLIAVLVARPGVAQYAPSHFVPAVEFRDTVATCLQPAASLQPGERGFSLRFGDVDSSQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0068856_1000181283	3300005614	Corn Rhizosphere	MWYVRLATLIVVLVARPCVAQYAPSHFVPAVEFPDSVASCTQPTVTLHPGERGFSLRFGSVDSAQRIVTGVWSSDGKLLSYSDARGDLRPPFPADARRNPRTTIMIDMPKHVALMYNDVDGEQQGSAASDSDGAMDSENLGPPRQMLERLRRQCGAP*
Ga0068858_1001981953	3300005842	Switchgrass Rhizosphere	HFVPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0068862_1017105731	3300005844	Switchgrass Rhizosphere	EFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP*
Ga0068862_1025574522	3300005844	Switchgrass Rhizosphere	TASLQPGERGFSLRFGDADSAQRVVTAVWRSDGELLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0097621_1006900591	3300006237	Miscanthus Rhizosphere	EFRDTVGNCAQPAASLQPGERGFSLRFGDADSAARIVTAIWRRDGKLLSYSDTRGDLRPPFPADVRRSPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDLENLGPPRRMLERLQRQCGAP*
Ga0074048_109702971	3300006581	Soil	LTTLLARPAVAQYAPSHFVPAVEFPDMAATCAQPTANLQPGERGWALRFGSADSAQRIVTAVWGSDGKLLRYSDARGDLRPPFPADARRNPRTTITIDVPKRVALMYNDVDGEQQGSAASDSDGAIDSENLGPPRQMLERLRRECGAP*
Ga0075425_1001329501	3300006854	Populus Rhizosphere	VRLAALMALAFAPRAHAQFSPSRFVPAVEFRDTVASCAQPTPSPEPGQRAFSLRFGDADSAARVVTAIWGKDGRLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMDNLGPPRRMLERLRQQCGAP*
Ga0075429_1010155802	3300006880	Populus Rhizosphere	QPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVSRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR*
Ga0075419_113455011	3300006969	Populus Rhizosphere	ADRSMRCVRFVILIGVLIARPGVAQYPPSRFVPAVDFRDTVANCAQLTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR*
Ga0075435_1009568271	3300007076	Populus Rhizosphere	SPEPGQRAFSLRFGDADSAARVVTAIWGKDGRLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMDNLGPPRRMLERLRQQCGAP*
Ga0105240_107206112	3300009093	Corn Rhizosphere	MRYVRFVILIGVLIARPGVAQYPPSHFVPAVDFRDTAADCAQPTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR*
Ga0105240_124226881	3300009093	Corn Rhizosphere	MAVLAAYPVGAQLPPKYFVPVVEFRDTVATCAEPPANLPAGERGYTLRFGSADSAERIITAIWGRDGKLVRYSDTRGDLRPPFPANAARSPKTTITIDVPRQVVLMYNDVDGEQQGSAASDSDGALDSDNLGPPRRMLERLR
Ga0105245_100278564	3300009098	Miscanthus Rhizosphere	MLMAVLVAQPVVAQFAPSHFVPAVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP*
Ga0105247_108499102	3300009101	Switchgrass Rhizosphere	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDS
Ga0105247_110782821	3300009101	Switchgrass Rhizosphere	GFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0111538_133701951	3300009156	Populus Rhizosphere	ILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR*
Ga0105242_100214194	3300009176	Miscanthus Rhizosphere	MRYFRFAVLIAVLVARPGVAQYAPSHFVPAVEFRDTVATCLQPAASLQPGERGFSLRFGDVDSSQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRSPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRQMLDRLRLQCGAPEIR*
Ga0105242_100229347	3300009176	Miscanthus Rhizosphere	AVLVAQPVVAQFPPSHVGPGVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP*
Ga0105248_100570915	3300009177	Switchgrass Rhizosphere	MLMAVLVAQPVVAQFPPSHFVPAVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP*
Ga0105237_112570471	3300009545	Corn Rhizosphere	PGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0105238_115722952	3300009551	Corn Rhizosphere	AYPVGAQLPPKYFVPVVEFRDTVATCAEPPANLPAGERGYTLRFGSADSAERIITAIWGRDGKLVRYSDTRGDLRPPFPANAARSPKTTITIDVPRQVVLMYNDVDGEQQGSAASDSDGALDSDNLGPPRRMLERLRRQCGAP*
Ga0105238_124693031	3300009551	Corn Rhizosphere	PTGERGYSLRFGTADSSERIVTAIWSDNGKLIRYSDARGDLRPPFPANAPRNPKTTITIDVPRQVVLMYNDVDGEQQGSAASDSEGALDADNLGPPRRMLERLRRQCAAP*
Ga0105238_128530121	3300009551	Corn Rhizosphere	EFPDSVASCTQPTVTLHPGERGFSLRFGSVDSAQRIVTGVWSSDGKLLSYSDARGDLRPPFPADARRNPRTTIMIDMPKHVALMYNDVDGEQQGSAASDSDGAMDSENLGPPRQMLERLRRQCGAP*
Ga0105249_101480794	3300009553	Switchgrass Rhizosphere	MRYVRFVILIGVLIARPGVAQYPPSHFVPAVDFRDTVANCAQPTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPR
Ga0134128_102131461	3300010373	Terrestrial Soil	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSA
Ga0105239_120207131	3300010375	Corn Rhizosphere	NLHMSAGRSMRYVRFVILIGVLIARPGVAQYPPSHFVPAVDFRDAVANCAQPTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR*
Ga0134124_105517951	3300010397	Terrestrial Soil	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQ
Ga0134127_119001532	3300010399	Terrestrial Soil	ALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR*
Ga0164298_109003791	3300012955	Soil	MRYFRFAVLIAVLVARPGVAQYAPSHFVPAVEFRDTVATCTQPAAALQPGERGFSLRFGDVDSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLEC
Ga0164299_112450421	3300012958	Soil	LIAVLVARPGVAQYAPSHFVPAVEFRDTVATCTQPAAALQPGERGFSLRFGDVDSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGATEIR*
Ga0164301_104017622	3300012960	Soil	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCTQPAAALQPGERVFSLRFGDVDSSQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGA
Ga0164302_103244931	3300012961	Soil	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCTQPAAALQPGERGFSLRFGDVDSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRH
Ga0164309_110320072	3300012984	Soil	YVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCTQPAAALQPGERGFSLRFGDVDSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0164308_113810422	3300012985	Soil	MALALAPRAHAQFSPSRFLPAVEFRDTVANCAQPTASLEPGERAFSLRFGDADSAARVVTAIWGKDGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAPSGAPR*
Ga0164304_101763972	3300012986	Soil	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCTQPAAALQPGERGFSLRFGDVDSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIEM
Ga0164305_110530751	3300012989	Soil	MFAFSNRTSSNAGRFMRSYRLAMFMAVLVAQPVVAQFPPSHFVPAVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQ
Ga0157369_100976402	3300013105	Corn Rhizosphere	MRYIRFVVLLAAWAARATPAQSPPRYFVPAVEFPDTAARCAEPPANLPTGERGYSLRFGTADSSERIVTAIWSDNGKLIRYSDARGDLRPPFPANAPRNPKTTITIDVPRQVVLMYNDVDGEQQGSAASDSEGALDADNLGPPRRMLERLRRQCAAP*
Ga0157374_100214474	3300013296	Miscanthus Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAGWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR*
Ga0157378_114681762	3300013297	Miscanthus Rhizosphere	MLMAVLVAQPVVAQFPPSHFVPAVEFRDTVASCTQPTVTLQAGERGFSLRFGAADSARRIVTATGGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLAPPRMMLDRLRRQ
Ga0157372_113740552	3300013307	Corn Rhizosphere	MRYIRFVALMAVLAAYPVGAQLPPKYFVPVVEFRDTVATCAEPPANLPAGERGYTLRFGSADSAERIITAIWGRDGKLVRYSDTRGDLRPPFPANAARSPKTTITIDVPRQVVLMYNDVDGEQQGSAASDSDGALDSDNLGPPRRMLERLRRQCGAP*
Ga0163163_118696561	3300014325	Switchgrass Rhizosphere	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCG
Ga0173480_102299681	3300015200	Soil	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAE
Ga0132258_102991132	3300015371	Arabidopsis Rhizosphere	MLMPVLVAQPVVAQFPPSHFVPAVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP*
Ga0132258_117343782	3300015371	Arabidopsis Rhizosphere	MRCVRFVVLIAVLIAHPGIAQYPPSHFVPAVDFRDTVASCMQPTATLQPGERGFSLRFGSVDSAQRVVTAVWRNDGRLLRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRQMLDRLRRQCGAPEAR*
Ga0132258_119851841	3300015371	Arabidopsis Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCLQPATSLQPGERGFSLRFGDVDSTQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRSPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRQMLDRLRLQCGAPEIR*
Ga0132258_128201023	3300015371	Arabidopsis Rhizosphere	MRYVRFVILIGVLIARPGVAQYPPSHFVPAVDFRDTVANCAQPTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAI
Ga0132256_1005213551	3300015372	Arabidopsis Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCLQPAASLQPGERGFSLRFGDVDSSQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRSPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRQMLDRLRLQCGAPEIR*
Ga0132257_1004212011	3300015373	Arabidopsis Rhizosphere	MRYFRFAVLIAVLVARPGVAQYAPSHFVPAVEFRDTVATCLQAAASLQPGERGFSLRFGDVDFTQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRQMLDRLRLQCGAPEIR*
Ga0132255_1004225913	3300015374	Arabidopsis Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCLQAAASLQPGERGFSLRFGDVDSSQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRSPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRQMLDRLRLKCGAPEIR*
Ga0132255_1032442372	3300015374	Arabidopsis Rhizosphere	AVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP*
Ga0173482_102686232	3300019361	Soil	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0182009_100529732	3300021445	Soil	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKDGRLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMDNLGPPRRMLERLRQQCGAP
Ga0182009_101595541	3300021445	Soil	DTVANCAQPAASLQPGERGFSLRFGDADSAARIVTAIWRRDGKLLSYSDTRGDLRPPFPADVRRSPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDLENLGPPRRMLERLQRQCGAP
Ga0247792_10983001	3300022880	Soil	VLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0247745_10797721	3300022898	Soil	VARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0207695_112593661	3300025913	Corn Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDV
Ga0207695_114769032	3300025913	Corn Rhizosphere	MRYVRFVILIGVLIARPGVAQYPPSHFVPAVDFRDTAADCAQPTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGS
Ga0207662_106331692	3300025918	Switchgrass Rhizosphere	LIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0207694_117735801	3300025924	Corn Rhizosphere	EFPDSVASCTQPTVTLHPGERGFSLRFGSVDSAQRIVTGVWSSDGKLLSYSDARGDLRPPFPADARRNPRTTIMIDMPKHVALMYNDVDGEQQGSAASDSDGAMDSENLGPPRQMLERLRRQCGAP
Ga0207650_112898301	3300025925	Switchgrass Rhizosphere	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVITAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGS
Ga0207687_104661083	3300025927	Miscanthus Rhizosphere	MRSYRLAMLMAVLVAQPVVAQFPPSHFVPAVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP
Ga0207701_103715482	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DFRDAVANCAQPTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR
Ga0207701_116116581	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	PAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTATWGKDGRLLSYSDARGDLRPPFPADVRRNPRTTIKIDLLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP
Ga0207706_104372592	3300025933	Corn Rhizosphere	MRYVRFVILIGVLIARPGVAQYPPSHFVPAVDFRDTVANCAQPTAALQPGERGFSLRFGSVDSAQRVVTAIWRSDGRLVRYTDARGDLRPPFPADVRRNPRTTITIDVLRQVTLMYNDVDGEQQGSAASDAEGAIDSQNLGPPRQLLDRLRRQCGAPETR
Ga0207686_100506371	3300025934	Miscanthus Rhizosphere	TLQAGERGFSLRFGAADSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPPRMMLDRLRRQCGAP
Ga0207711_107104451	3300025941	Switchgrass Rhizosphere	MRSYRLAMLMAVLVAQPVVAQFPPSHFVPAVEFRDTVASCTQPTVTLQAGERGFSLRFGATDSAQRIVTAIWGSDGKLVSYSDARGDLRPPFPAEARRNPRTTIKIDVPRHVALMYNDVDGEQQGSAASDADGAMDSNNLGPP
Ga0207661_103380192	3300025944	Corn Rhizosphere	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP
Ga0207679_105255802	3300025945	Corn Rhizosphere	RYVIHWQVASMRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP
Ga0207667_101096772	3300025949	Corn Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTSVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0207651_101294701	3300025960	Switchgrass Rhizosphere	VEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0207703_101801823	3300026035	Switchgrass Rhizosphere	MRYVRFAILIAVLVARPGVAQYAPSHFVPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0207639_101098993	3300026041	Corn Rhizosphere	ATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0207702_102489952	3300026078	Corn Rhizosphere	MWYVRLATLIVVLVARPCVAQYAPSHFVPAVEFPDSVASCTQPTVTLHPGERGFSLRFGSVDSAQRIVTGVWSSDGKLLSYSDARGDLRPPFPADARRNPRTTIMIDMPKHVALMYNDVDGEQQGSAASDSDGAMDSENLGPPRQMLERLRRQCGAP
Ga0207641_106968291	3300026088	Switchgrass Rhizosphere	MRYVRLAALMALAFTPPAHAQYSPSRFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVITAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP
Ga0207497_1024201	3300026786	Soil	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHM
Ga0207443_10090981	3300026853	Soil	APSHFVPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAASDAEGAIDSPNLGPPRHMLDRLRLQCGAPEIR
Ga0310813_117168901	3300031716	Soil	MRYVRFAILIAVLVARPGVAQYAPSHFIPAVEFRDTVATCVQPTASLQPGERGFSLRFGDADSAQRVVTAVWRSDGKLLRYTDARGDLRPPFPANARRNPRTTITVDLLRQVTLMYNDVDGEQQGSAAT
Ga0308174_112632242	3300031939	Soil	GERGYSLRFGNADSAERIITAIWGRDGKLIRYSDTRGDLRPPFPANAQRSPKTTITIDVPRQVVLMYNDVAGEQQGSAASDSDGALDSDNLGPPRQMLERLRRQCGAP
Ga0310810_114083551	3300033412	Soil	RFVPAVEFRDTVASCAQPTASPEPGERAFSLRFGDADSAARVVTAIWGKGGKLLSYSDARGDLRPPFPADVRRNPRTTIKIDMLQHVALTYNDVDGEQQGSAASDSEGAIDMENLGPPRRMLERLRQQCGAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097561

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences