Sample 3300026054

Overview

Basic Information
IMG/M Taxon OID	3300026054 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0116120 \| Ga0208659
Sample Name	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	51819384
Sequencing Scaffolds	32
Novel Protein Genes	33
Associated Families	33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Nitrospirae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Antioch, San Francisco Bay, California
Coordinates	Lat. (^o)	38.000706	Long. (^o)	-121.624306	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001314	Metagenome / Metatranscriptome	725	Y
F001965	Metagenome / Metatranscriptome	610	Y
F004253	Metagenome	446	Y
F006533	Metagenome / Metatranscriptome	371	Y
F007548	Metagenome	349	Y
F007886	Metagenome / Metatranscriptome	343	Y
F010202	Metagenome / Metatranscriptome	307	Y
F013243	Metagenome / Metatranscriptome	273	Y
F019097	Metagenome / Metatranscriptome	231	Y
F021340	Metagenome	219	Y
F022737	Metagenome	213	N
F025096	Metagenome / Metatranscriptome	203	Y
F025674	Metagenome / Metatranscriptome	200	Y
F027082	Metagenome / Metatranscriptome	195	Y
F027922	Metagenome / Metatranscriptome	193	Y
F028562	Metagenome	191	Y
F033346	Metagenome / Metatranscriptome	177	Y
F034498	Metagenome / Metatranscriptome	174	Y
F037023	Metagenome / Metatranscriptome	168	Y
F038873	Metagenome / Metatranscriptome	165	Y
F040709	Metagenome / Metatranscriptome	161	Y
F048737	Metagenome / Metatranscriptome	147	Y
F049465	Metagenome	146	Y
F061958	Metagenome / Metatranscriptome	131	N
F066548	Metagenome / Metatranscriptome	126	Y
F079856	Metagenome	115	Y
F080668	Metagenome	115	Y
F083816	Metagenome	112	Y
F088683	Metagenome	109	Y
F090480	Metagenome / Metatranscriptome	108	Y
F097964	Metagenome / Metatranscriptome	104	Y
F098734	Metagenome / Metatranscriptome	103	Y
F103981	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F001314

Metagenome / Metatranscriptome

725

F001965

Metagenome / Metatranscriptome

610

F004253

Metagenome

446

F006533

Metagenome / Metatranscriptome

371

F007548

Metagenome

349

F007886

Metagenome / Metatranscriptome

343

F010202

Metagenome / Metatranscriptome

307

F013243

Metagenome / Metatranscriptome

273

F019097

Metagenome / Metatranscriptome

231

F021340

Metagenome

219

F022737

Metagenome

213

F025096

Metagenome / Metatranscriptome

203

F025674

Metagenome / Metatranscriptome

200

F027082

Metagenome / Metatranscriptome

195

F027922

Metagenome / Metatranscriptome

193

F028562

Metagenome

191

F033346

Metagenome / Metatranscriptome

177

F034498

Metagenome / Metatranscriptome

174

F037023

Metagenome / Metatranscriptome

168

F038873

Metagenome / Metatranscriptome

165

F040709

Metagenome / Metatranscriptome

161

F048737

Metagenome / Metatranscriptome

147

F049465

Metagenome

146

F061958

Metagenome / Metatranscriptome

131

F066548

Metagenome / Metatranscriptome

126

F079856

Metagenome

115

F080668

Metagenome

115

F083816

Metagenome

112

F088683

Metagenome

109

F090480

Metagenome / Metatranscriptome

108

F097964

Metagenome / Metatranscriptome

104

F098734

Metagenome / Metatranscriptome

103

F103981

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208659_1000039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2861	Open in IMG/M
Ga0208659_1000129	All Organisms → cellular organisms → Bacteria	2263	Open in IMG/M
Ga0208659_1003307	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1001	Open in IMG/M
Ga0208659_1003474	All Organisms → cellular organisms → Bacteria → Proteobacteria	987	Open in IMG/M
Ga0208659_1003594	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
Ga0208659_1004096	All Organisms → cellular organisms → Bacteria → Proteobacteria	940	Open in IMG/M
Ga0208659_1004203	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
Ga0208659_1004743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	895	Open in IMG/M
Ga0208659_1004761	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
Ga0208659_1005219	Not Available	864	Open in IMG/M
Ga0208659_1005606	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	843	Open in IMG/M
Ga0208659_1005767	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
Ga0208659_1006172	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	815	Open in IMG/M
Ga0208659_1006333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	808	Open in IMG/M
Ga0208659_1007420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	763	Open in IMG/M
Ga0208659_1008201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	736	Open in IMG/M
Ga0208659_1009130	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
Ga0208659_1010747	All Organisms → cellular organisms → Bacteria → Nitrospirae	667	Open in IMG/M
Ga0208659_1011282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	655	Open in IMG/M
Ga0208659_1012219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	637	Open in IMG/M
Ga0208659_1013338	Not Available	617	Open in IMG/M
Ga0208659_1014046	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	606	Open in IMG/M
Ga0208659_1014305	Not Available	602	Open in IMG/M
Ga0208659_1015435	Not Available	585	Open in IMG/M
Ga0208659_1015841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	579	Open in IMG/M
Ga0208659_1019679	Not Available	532	Open in IMG/M
Ga0208659_1020113	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
Ga0208659_1020202	Not Available	526	Open in IMG/M
Ga0208659_1021071	Not Available	517	Open in IMG/M
Ga0208659_1021674	Not Available	512	Open in IMG/M
Ga0208659_1022091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	508	Open in IMG/M
Ga0208659_1023081	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208659_1000039

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

2861

Open in IMG/M

Ga0208659_1000129

All Organisms → cellular organisms → Bacteria

2263

Open in IMG/M

Ga0208659_1003307

All Organisms → cellular organisms → Bacteria → Terrabacteria group

1001

Open in IMG/M

Ga0208659_1003474

All Organisms → cellular organisms → Bacteria → Proteobacteria

987

Open in IMG/M

Ga0208659_1003594

All Organisms → cellular organisms → Bacteria → Proteobacteria

976

Open in IMG/M

Ga0208659_1004096

All Organisms → cellular organisms → Bacteria → Proteobacteria

940

Open in IMG/M

Ga0208659_1004203

All Organisms → cellular organisms → Bacteria → Proteobacteria

931

Open in IMG/M

Ga0208659_1004743

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales

895

Open in IMG/M

Ga0208659_1004761

All Organisms → cellular organisms → Bacteria

894

Open in IMG/M

Ga0208659_1005219

Not Available

864

Open in IMG/M

Ga0208659_1005606

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria

843

Open in IMG/M

Ga0208659_1005767

All Organisms → cellular organisms → Bacteria

834

Open in IMG/M

Ga0208659_1006172

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium

815

Open in IMG/M

Ga0208659_1006333

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

808

Open in IMG/M

Ga0208659_1007420

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

763

Open in IMG/M

Ga0208659_1008201

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium

736

Open in IMG/M

Ga0208659_1009130

All Organisms → cellular organisms → Bacteria

708

Open in IMG/M

Ga0208659_1010747

All Organisms → cellular organisms → Bacteria → Nitrospirae

667

Open in IMG/M

Ga0208659_1011282

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium

655

Open in IMG/M

Ga0208659_1012219

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium

637

Open in IMG/M

Ga0208659_1013338

Not Available

617

606

Not Available

602

Open in IMG/M

Ga0208659_1015435

Not Available

585

Open in IMG/M

Ga0208659_1015841

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

579

Open in IMG/M

Ga0208659_1019679

Not Available

532

Open in IMG/M

Ga0208659_1020113

All Organisms → cellular organisms → Bacteria

527

Open in IMG/M

Ga0208659_1020202

Not Available

526

Open in IMG/M

Ga0208659_1021071

Not Available

517

Open in IMG/M

Ga0208659_1021674

Not Available

512

Open in IMG/M

Ga0208659_1022091

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi

508

Open in IMG/M

Ga0208659_1023081

All Organisms → cellular organisms → Bacteria

500

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208659_1000039	Ga0208659_10000391	F040709	MIELIIFIVVAFIAWVVWTEQKSKQALERDALDQAWREVLDDPHYMERRHYEERMRVEDQARAAAANR
Ga0208659_1000129	Ga0208659_10001292	F007548	MAEASITADSKINDVLAKHPGTAPVFTQGRRLYVDQPGELYARFPGLSVGDFARQNGMDPGPLLAQLNAFAESGASARASGAHAADESRAGQFSLTLGYTCSHRPRDDAAPDSVSVVAVQSAHGPE
Ga0208659_1003307	Ga0208659_10033073	F001314	PTPTRGETARDLYDKRLTWITDAMRDSARSHGCLFHRCWYAADGSAFYALACWATREGASAFFNEWDIYDEEGEEAIYLEGDWGLVPVP
Ga0208659_1003474	Ga0208659_10034742	F025674	MTYFVEGLSGHTEPETKVRRIGEYDSLADAVAAAKRLVDGYLRREYRPGMEPRSLVSRYQEQGEHPYIFRDDDTTFNVPGFNHLHYATARSADVCAGKK
Ga0208659_1003594	Ga0208659_10035943	F027082	MGNKTESRRTTSCELPRDMRAESILEFVFNDEEEALCNEEFVLSHQRDMPAIQEFLQEMNELDARPATARRH
Ga0208659_1004096	Ga0208659_10040962	F013243	VSALRSSSRLGPLLVGAALVTALAAVGVDAARAGERRAGTVLAVDPQARTVILDEFGANAERRALRVQVPREALVLLSQRNQAGRDVKDVFRSSSITLADVREGDFVVVEMSDDPDVARLVMITLRRGAGS
Ga0208659_1004203	Ga0208659_10042031	F034498	VARSSLPQFFDLALRIRTLTPMLYDPGVWLFALAVGLFVAGILGVVLSTRRVPPSGTLGVPGLTGDPGAERLLLELEAEVERLRAERDELRGVLGRLASLLERRYPHLSAHRTAHLVTAGDDEEHRADGS
Ga0208659_1004743	Ga0208659_10047431	F027922	RNFHRRHLTTSQRALIAAEMCKLRPRGNAGTSPYLTAAQASTLMGVGQDLVKDAKHLLRTGDAELLRSVRDGVQSVSAAVQEKKKKKAPFTFLEQFAQRLDRALQGHNDRDAQVIYAAKPLLQYITLRLHDYLDPRTAEPLSGEDGALLWDPAELKVPDWLYTERGETIAAERRARLAAVLPKAREAAVGFPGERCSECGLPLLSTIRTGDPSYCAVCKGNVLWEWSWMREQVEVAFSSALRSVGPHP
Ga0208659_1004761	Ga0208659_10047612	F080668	ERVLTLNELFANPKLNLEITRRLEAGQKSVSISGEDAAKTGEF
Ga0208659_1005219	Ga0208659_10052191	F103981	FPQLERRILPKNDALKASQLTRGVLNCPNQVEGLAMSDVAGLNVQVLQDCDLVVTEPGTGEKVVYRKDGDSPVLVMMDSLRADPDAARVRFLVSAWKAAHAKAQQLGWLKS
Ga0208659_1005606	Ga0208659_10056062	F019097	IVQLAFMLGPLLGAAAGYLLDGVTGATSGFVIPMGPFVLVWLFGGR
Ga0208659_1005767	Ga0208659_10057672	F021340	VAIVTPFFVIVFGASLFLGTVMVIGTFHGTDPSNELTANGRAGRIARGLRDGTLCHYMVFDNKTGLPVEDRIDRCDENKPKPKQEKPATFTSEK
Ga0208659_1006172	Ga0208659_10061722	F083816	YLTLAISKTDDVIAFFALAACGLIAAAFGRRRERLSDVADRADQELTTLARFAERSRSGRPLDGLLQDLRAEFDLGGLVLRDADGRVLAAVPADAGARPAPRMALDGATLFAAGDESPRMGDNGLRLPEGGGRLTLQTPRGPVSLDLWEGNDRGFGRDESRTLAIAAAILGLGMR
Ga0208659_1006333	Ga0208659_10063331	F038873	VFVGTPDERRRVEILRGSLVSALIRALPGIDIRIVANRAERRALAP
Ga0208659_1007420	Ga0208659_10074201	F079856	FIGDYDLMARREPDPLTQAAGMREGYVYNETLMARYLTGVQFAQRYPAWKLCRQPQIVQSGVLRRETETVNAEVARFARGMGSATVATVGEAIFRCTQGGDGFVMATTLLLRPASGPGPSMWFVYQLAGFVTRDPAQGYFAKYVLSHMLASLQTNREWEIRSAQVAGQYANAMMQISNAVTQSTIQHARQQAAQGSAGGWNHPNTGGVPKITRDPGVEQRRDDANRGTRRVCDDVGTCKTVDNSWSNVWRDHNG
Ga0208659_1008201	Ga0208659_10082011	F066548	MARNSRAWRTPIAIAALVAGCAAPGEAPERPAHSVDGVRKVVDSLGTEIRKRTEDDPYRKLPVVVRTTTAANTGIEPMIAELLRTRLVDAGVTVEAACTPRCMEVSLQEFAIDTPRTTGLTPGQILFVGGGSIPFVGGLIRTFGEQQREQERAANRTTGVFVTFAAREGNRSTA
Ga0208659_1009130	Ga0208659_10091301	F098734	LLATGVTGFGAHLVHLCATARDRLLALQSRKARPGKR
Ga0208659_1010747	Ga0208659_10107471	F007886	VEGGDAVVAVFEGLEVVLAGVLAGGDTAAEAGVEGAVDVVCSDVLGADSFLSPVGGAGASLPGDGFSLSE
Ga0208659_1011282	Ga0208659_10112821	F037023	PEPQVRRIGEYKTVEEAVAVAEKAIEQFLRGEFKRGMDATKLFSLYEERGEHMFIFQDEAKTFNVAGFDHTEYARTRAAEICGGVK
Ga0208659_1012219	Ga0208659_10122191	F006533	QELPGEVQVNIARRVDSYIKIARAAKEETIVAMVASTAMEDQAKAIGQGGDTMDPRWAAPAIAEAWCYATISLSKGYLDRLHAEAIIAAIETFTTSRLNR
Ga0208659_1012948	Ga0208659_10129482	F097964	VTLAHHALRPHLIVPEIGVFRFFVQFGETSGRGVDVKDASSAAARTA
Ga0208659_1013338	Ga0208659_10133381	F028562	RRKPTAARPPAKIKQLEARLAQVEADLARVRSTAARGGLTRVRLAGIEKAMSQHVARAQAGLKDSVNRLSRTLLSARSRKEAAQQLALARQNVKESLDRLARTLGESQKKITHEVGLLTRGLKAGVKAGRAAYRGPRH
Ga0208659_1014046	Ga0208659_10140462	F049465	EQDDLPRIDLRFAKLCMELDCNTVFDSARFRHCPTCGSIEFYPLESWLNRERSEKVTAGLPNLPNLSADRADRDAALPRPLWLERLRAKRAASDARMAPGPLNIPGGGRRRRVG
Ga0208659_1014305	Ga0208659_10143052	F090480	MNKIIACAVLAAEFGFSFTIAKAMPLVPIGMEQAGLAIPVADGCGFNRYRDARGICRKKYVITRHWGRQPFYTGCGGLNSHRVCNLYGQCWMVCD
Ga0208659_1015435	Ga0208659_10154352	F022737	MPPCLATPSVCYSTGHMGVYAELRGFVLTHRECGVLRGATKPIDRGFRLAVICPCGARFARSVYAEDPEAERLQEALAAFQD
Ga0208659_1015841	Ga0208659_10158412	F010202	MRTAKRSGMPRYLRKPMVARAATGPVARIAPVLIRTVAFVPAYQRKRLH
Ga0208659_1019679	Ga0208659_10196791	F048737	CTVVLCSGFTWPPDYAEQSRADVTTCVSYAQRTSPRFEAWVRGVDLVTGRVDIERSPRDDSRGARAFSRCLLAVRHWRLIERNLPKPTEPSMPELATMAGREPDSLTR
Ga0208659_1020113	Ga0208659_10201131	F088683	MIRGSRGFALLAALWLLVALTAIAGVGVGIAQFGTLTTRNRVLLARAGWAREACVEILLARYADDVTVRAVPRVDLGRGTWCEARV
Ga0208659_1020202	Ga0208659_10202021	F061958	MAMKRRIWVFAAAMLAQNYAGLQSRAHAQVFDFGQIEEFESLGSGTQKGSSPQKTIVD
Ga0208659_1021071	Ga0208659_10210711	F025096	PSFTSVFPYESREVGKYQVDNHTKAPLRFVVQAWVNTDAATLYGKAISLEGIADHVTWKREGSPTVDAQHIPGDVRTIPVAWMNLKERLLLTEPVSVHFYTILQDESSAPTPMDHYLGVVTTESIGKGSVITWRVYFDTTGWSPMAGIMSSQIKSGLEKGFQSWIDEYGGM
Ga0208659_1021674	Ga0208659_10216743	F033346	MPTYMMSCTHCAYEVVFRTEPDAKTEGVRHLLQFPAHGVKVTPSEDALIWEEERVTVG
Ga0208659_1022091	Ga0208659_10220911	F001965	SKVCVGLAFMCMAPAVGFAAEKSYLCAINEVYECVAVTGCSRISLDDANLVGIMLIDLEKKQLRTAPLGGEARADDIESVAVTDKAILLHGTGKREADRTWSAVISLETGNVTAGVSTLDSSLSLLGKCTAQP
Ga0208659_1023081	Ga0208659_10230811	F004253	MRMPYNKQLQRTAVRHHAVVASAPFHYALASRITRQRAAAELRR

Scaffold ID

Protein ID

Family

Sequence

Ga0208659_1000039

Ga0208659_10000391

F040709

MIELIIFIVVAFIAWVVWTEQKSKQALERDALDQAWREVLDDPHYMERRHYEERMRVEDQARAAAANR

Ga0208659_1000129

Ga0208659_10001292

F007548

MAEASITADSKINDVLAKHPGTAPVFTQGRRLYVDQPGELYARFPGLSVGDFARQNGMDPGPLLAQLNAFAESGASARASGAHAADESRAGQFSLTLGYTCSHRPRDDAAPDSVSVVAVQSAHGPE

Ga0208659_1003307

Ga0208659_10033073

F001314

PTPTRGETARDLYDKRLTWITDAMRDSARSHGCLFHRCWYAADGSAFYALACWATREGASAFFNEWDIYDEEGEEAIYLEGDWGLVPVP

Ga0208659_1003474

Ga0208659_10034742

F025674

MTYFVEGLSGHTEPETKVRRIGEYDSLADAVAAAKRLVDGYLRREYRPGMEPRSLVSRYQEQGEHPYIFRDDDTTFNVPGFNHLHYATARSADVCAGKK

Ga0208659_1003594

Ga0208659_10035943

F027082

MGNKTESRRTTSCELPRDMRAESILEFVFNDEEEALCNEEFVLSHQRDMPAIQEFLQEMNELDARPATARRH

Ga0208659_1004096

Ga0208659_10040962

F013243

VSALRSSSRLGPLLVGAALVTALAAVGVDAARAGERRAGTVLAVDPQARTVILDEFGANAERRALRVQVPREALVLLSQRNQAGRDVKDVFRSSSITLADVREGDFVVVEMSDDPDVARLVMITLRRGAGS

Ga0208659_1004203

Ga0208659_10042031

F034498

VARSSLPQFFDLALRIRTLTPMLYDPGVWLFALAVGLFVAGILGVVLSTRRVPPSGTLGVPGLTGDPGAERLLLELEAEVERLRAERDELRGVLGRLASLLERRYPHLSAHRTAHLVTAGDDEEHRADGS

Ga0208659_1004743

Ga0208659_10047431

F027922

RNFHRRHLTTSQRALIAAEMCKLRPRGNAGTSPYLTAAQASTLMGVGQDLVKDAKHLLRTGDAELLRSVRDGVQSVSAAVQEKKKKKAPFTFLEQFAQRLDRALQGHNDRDAQVIYAAKPLLQYITLRLHDYLDPRTAEPLSGEDGALLWDPAELKVPDWLYTERGETIAAERRARLAAVLPKAREAAVGFPGERCSECGLPLLSTIRTGDPSYCAVCKGNVLWEWSWMREQVEVAFSSALRSVGPHP

Ga0208659_1004761

Ga0208659_10047612

F080668

ERVLTLNELFANPKLNLEITRRLEAGQKSVSISGEDAAKTGEF

Ga0208659_1005219

Ga0208659_10052191

F103981

FPQLERRILPKNDALKASQLTRGVLNCPNQVEGLAMSDVAGLNVQVLQDCDLVVTEPGTGEKVVYRKDGDSPVLVMMDSLRADPDAARVRFLVSAWKAAHAKAQQLGWLKS

Ga0208659_1005606

Ga0208659_10056062

F019097

IVQLAFMLGPLLGAAAGYLLDGVTGATSGFVIPMGPFVLVWLFGGR

Ga0208659_1005767

Ga0208659_10057672

F021340

VAIVTPFFVIVFGASLFLGTVMVIGTFHGTDPSNELTANGRAGRIARGLRDGTLCHYMVFDNKTGLPVEDRIDRCDENKPKPKQEKPATFTSEK

Ga0208659_1006172

Ga0208659_10061722

F083816

YLTLAISKTDDVIAFFALAACGLIAAAFGRRRERLSDVADRADQELTTLARFAERSRSGRPLDGLLQDLRAEFDLGGLVLRDADGRVLAAVPADAGARPAPRMALDGATLFAAGDESPRMGDNGLRLPEGGGRLTLQTPRGPVSLDLWEGNDRGFGRDESRTLAIAAAILGLGMR

Ga0208659_1006333

Ga0208659_10063331

F038873

VFVGTPDERRRVEILRGSLVSALIRALPGIDIRIVANRAERRALAP

Ga0208659_1007420

Ga0208659_10074201

F079856

FIGDYDLMARREPDPLTQAAGMREGYVYNETLMARYLTGVQFAQRYPAWKLCRQPQIVQSGVLRRETETVNAEVARFARGMGSATVATVGEAIFRCTQGGDGFVMATTLLLRPASGPGPSMWFVYQLAGFVTRDPAQGYFAKYVLSHMLASLQTNREWEIRSAQVAGQYANAMMQISNAVTQSTIQHARQQAAQGSAGGWNHPNTGGVPKITRDPGVEQRRDDANRGTRRVCDDVGTCKTVDNSWSNVWRDHNG

Ga0208659_1008201

Ga0208659_10082011

F066548

MARNSRAWRTPIAIAALVAGCAAPGEAPERPAHSVDGVRKVVDSLGTEIRKRTEDDPYRKLPVVVRTTTAANTGIEPMIAELLRTRLVDAGVTVEAACTPRCMEVSLQEFAIDTPRTTGLTPGQILFVGGGSIPFVGGLIRTFGEQQREQERAANRTTGVFVTFAAREGNRSTA

Ga0208659_1009130

Ga0208659_10091301

F098734

LLATGVTGFGAHLVHLCATARDRLLALQSRKARPGKR

Ga0208659_1010747

Ga0208659_10107471

F007886

VEGGDAVVAVFEGLEVVLAGVLAGGDTAAEAGVEGAVDVVCSDVLGADSFLSPVGGAGASLPGDGFSLSE

Ga0208659_1011282

Ga0208659_10112821

F037023

PEPQVRRIGEYKTVEEAVAVAEKAIEQFLRGEFKRGMDATKLFSLYEERGEHMFIFQDEAKTFNVAGFDHTEYARTRAAEICGGVK

Ga0208659_1012219

Ga0208659_10122191

F006533

QELPGEVQVNIARRVDSYIKIARAAKEETIVAMVASTAMEDQAKAIGQGGDTMDPRWAAPAIAEAWCYATISLSKGYLDRLHAEAIIAAIETFTTSRLNR

Ga0208659_1012948

Ga0208659_10129482

F097964

VTLAHHALRPHLIVPEIGVFRFFVQFGETSGRGVDVKDASSAAARTA

Ga0208659_1013338

Ga0208659_10133381

F028562

RRKPTAARPPAKIKQLEARLAQVEADLARVRSTAARGGLTRVRLAGIEKAMSQHVARAQAGLKDSVNRLSRTLLSARSRKEAAQQLALARQNVKESLDRLARTLGESQKKITHEVGLLTRGLKAGVKAGRAAYRGPRH

Ga0208659_1014046

Ga0208659_10140462

F049465

EQDDLPRIDLRFAKLCMELDCNTVFDSARFRHCPTCGSIEFYPLESWLNRERSEKVTAGLPNLPNLSADRADRDAALPRPLWLERLRAKRAASDARMAPGPLNIPGGGRRRRVG

Ga0208659_1014305

Ga0208659_10143052

F090480

MNKIIACAVLAAEFGFSFTIAKAMPLVPIGMEQAGLAIPVADGCGFNRYRDARGICRKKYVITRHWGRQPFYTGCGGLNSHRVCNLYGQCWMVCD

Ga0208659_1015435

Ga0208659_10154352

F022737

MPPCLATPSVCYSTGHMGVYAELRGFVLTHRECGVLRGATKPIDRGFRLAVICPCGARFARSVYAEDPEAERLQEALAAFQD

Ga0208659_1015841

Ga0208659_10158412

F010202

MRTAKRSGMPRYLRKPMVARAATGPVARIAPVLIRTVAFVPAYQRKRLH

Ga0208659_1019679

Ga0208659_10196791

F048737

CTVVLCSGFTWPPDYAEQSRADVTTCVSYAQRTSPRFEAWVRGVDLVTGRVDIERSPRDDSRGARAFSRCLLAVRHWRLIERNLPKPTEPSMPELATMAGREPDSLTR

Ga0208659_1020113

Ga0208659_10201131

F088683

MIRGSRGFALLAALWLLVALTAIAGVGVGIAQFGTLTTRNRVLLARAGWAREACVEILLARYADDVTVRAVPRVDLGRGTWCEARV

Ga0208659_1020202

Ga0208659_10202021

F061958

MAMKRRIWVFAAAMLAQNYAGLQSRAHAQVFDFGQIEEFESLGSGTQKGSSPQKTIVD

Ga0208659_1021071

Ga0208659_10210711

F025096

PSFTSVFPYESREVGKYQVDNHTKAPLRFVVQAWVNTDAATLYGKAISLEGIADHVTWKREGSPTVDAQHIPGDVRTIPVAWMNLKERLLLTEPVSVHFYTILQDESSAPTPMDHYLGVVTTESIGKGSVITWRVYFDTTGWSPMAGIMSSQIKSGLEKGFQSWIDEYGGM

Ga0208659_1021674

Ga0208659_10216743

F033346

MPTYMMSCTHCAYEVVFRTEPDAKTEGVRHLLQFPAHGVKVTPSEDALIWEEERVTVG

Ga0208659_1022091

Ga0208659_10220911

F001965

SKVCVGLAFMCMAPAVGFAAEKSYLCAINEVYECVAVTGCSRISLDDANLVGIMLIDLEKKQLRTAPLGGEARADDIESVAVTDKAILLHGTGKREADRTWSAVISLETGNVTAGVSTLDSSLSLLGKCTAQP

Ga0208659_1023081

Ga0208659_10230811

F004253

MRMPYNKQLQRTAVRHHAVVASAPFHYALASRITRQRAAAELRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026054: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences