Metagenome / Metatranscriptome Family F097964

Basic Information
Family ID	F097964
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	49 residues
Representative Sequence	IVERIALAHDALRARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA
Number of Associated Samples	98
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (4.808 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.577 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.63% β-sheet: 0.00% Coil/Unstructured: 49.37%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF05974	DUF892	27.88
PF00905	Transpeptidase	19.23
PF03462	PCRF	8.65
PF17092	PCB_OB	7.69
PF01520	Amidase_3	1.92
PF00239	Resolvase	0.96
PF11741	AMIN	0.96
PF01551	Peptidase_M23	0.96
PF00575	S1	0.96
PF00378	ECH_1	0.96
PF13924	Lipocalin_5	0.96
PF13520	AA_permease_2	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	27.88
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	8.65
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	8.65
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	1.92
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.96
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.15%
Host-Associated	Host-Associated	27.88%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.58%
Plants	Host-Associated → Plants	27.88%
Aquatic	Environmental → Aquatic	10.58%
Solid Waste	Engineered → Solid Waste	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.23%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.65%
Sediment	Environmental → Aquatic → Sediment	5.77%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Marine	Environmental → Aquatic → Marine	1.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.92%
Peat	Environmental → Terrestrial → Peat	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%
Grass	Engineered → Solid Waste → Grass	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.42%
Loam	Environmental → Terrestrial → Soil → Loam	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Sand	Environmental → Terrestrial → Soil → Sand	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Composting	Engineered → Solid Waste → Grass → Composting	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.81%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.96%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.96%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2140918006	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental	Open in IMG/M
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300000044	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old	Host-Associated	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004055	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005874	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014256	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D2	Environmental	Open in IMG/M
3300014322	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022850	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025829	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026054	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026743	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-10 (SPAdes)	Environmental	Open in IMG/M
3300026887	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027482	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2w-12 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031274	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_01385150	2124908032	Soil	PVLQRVALAHHALAARLVAPETGVLRLFVQLGEAAGRGVDVKDASSAAAATA
P1_C_00761980	2140918006	Soil	RVALAHHALAARLVAPETGVLRLFVQLGEAAGRGVDVKDASSAAAATA
4MG_01384840	2170459019	Switchgrass, Maize And Mischanthus Litter	RELILELLLDTANRLELIVQRVTLAHHALRPHLIVPEIGAFRFFVQFGEASGRGVDVKDASSAAARTA
ARSoilOldRDRAFT_0133972	3300000044	Arabidopsis Rhizosphere	VERIALAHDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA*
AF_2010_repII_A01DRAFT_10657871	3300000580	Forest Soil	THDPLCARLIVPEIGIFRLFIQFGEAPRRGVDIKDASSAAAQTA*
soilH1_101342212	3300003321	Sugarcane Root And Bulk Soil	LRAGLIAPEIGVFGFSVQFGETPLRGIDVKDASSAAAPTA*
Ga0055480_101868482	3300004055	Natural And Restored Wetlands	HPLGARLIVPEVGILGRLVQFGEAPLRGFDVKDASSAVRATA*
Ga0062589_1019049712	3300004156	Soil	ADRLELILQRVTFAHHALRPCLVVPEIGIFRFFVQFGEASGRGIDVKDASSAAARTA*
Ga0070688_1001997093	3300005365	Switchgrass Rhizosphere	LELIVERIALAHDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA*
Ga0070706_1003465071	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LIFELLLDMADRLELILQRVTFAHHALRPRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA*
Ga0066905_1009712242	3300005713	Tropical Forest Soil	LELIVQCVALAHNALRARLIVPEIGVFRFFVQFGEAPRRGIDVKDASSAAARTA*
Ga0074472_107891351	3300005833	Sediment (Intertidal)	HALGARLVIPQIGVFGFFVQFGEAARRGIDVKDASSAAAPTA*
Ga0068851_103812572	3300005834	Corn Rhizosphere	VERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA*
Ga0075288_10407841	3300005874	Rice Paddy Soil	QRVALAHHALAARLIAPQRGVFGFFVQFGEAARRGFDVKDASSAAATTA*
Ga0081455_109193991	3300005937	Tabebuia Heterophylla Rhizosphere	LVVPEVGVLGLLIQLGEADLCLVDVKDASSAVRATA*
Ga0066798_100802611	3300005980	Soil	ELLLDAADGVELIVQRVALAHGALGARRIAPEIGGFSRFVQLGKAALRGIDVKDASSAVVPTA*
Ga0075026_1003282602	3300006057	Watersheds	KLLLDAADGLKLVVERITLAHHTLRSYLIVPEIGVFRLLVQLGKAPRRGVDVKDASSAAALTA*
Ga0075018_106310961	3300006172	Watersheds	LNATDGFKLIVERIALTHNALSTGLVVPEIGVFRLFVQFGEALRRGIDVKDASSAAALTA
Ga0074062_117945791	3300006606	Soil	IAFTHNTLRAGLVVPEIRVFRLSIQFSEALRRGVDVKDASSAAARTA*
Ga0075430_1000771053	3300006846	Populus Rhizosphere	VPEFGIFGLLVQLGQTHLRGIDVKDASSAAQGTA*
Ga0075434_1001257133	3300006871	Populus Rhizosphere	DALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA*
Ga0075434_1018929422	3300006871	Populus Rhizosphere	DALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA*
Ga0075426_104392331	3300006903	Populus Rhizosphere	LRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAA
Ga0066793_104864011	3300009029	Prmafrost Soil	DGVELIVQRVALAHGALGARRIAPEIGGFSRFVQLGKAALRGIDVKDASSAVVPTA*
Ga0105094_107678211	3300009153	Freshwater Sediment	FAHDALRARLVVPQIGVFRFLVQLGETPRRGIDVKDASSAAVPTA*
Ga0105248_126559481	3300009177	Switchgrass Rhizosphere	DGLELIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA*
Ga0105237_111113111	3300009545	Corn Rhizosphere	HDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA*
Ga0105237_126391421	3300009545	Corn Rhizosphere	HDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA*
Ga0105854_11242091	3300009660	Permafrost Soil	SVALAHGALGLGLVVPECGVFSRLVQFGEAARRSIDVKDASSAGRSTA*
Ga0126384_101259401	3300010046	Tropical Forest Soil	IVPEIGVFRLFIQLGKATRSGINVKDASSAAAPTA*
Ga0126373_118930262	3300010048	Tropical Forest Soil	PRLIVPEIGVFRFFIQLGKATRSGINVKDASSAAVPTA*
Ga0126377_122496861	3300010362	Tropical Forest Soil	DTANRFELVVQRVPLAHHALRARLIVPQIRVFRILVQLCEASGRGVDVKDASSAAGLTA*
Ga0126383_134902311	3300010398	Tropical Forest Soil	LLDSANGLKLVIERVAFAHDTLRASLIVPEIGIFRFLIQFGKAAHRSVDVKDASSAA*
Ga0134127_102447962	3300010399	Terrestrial Soil	FELLLDMADRLELILQRVTFAHHALRPRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA*
Ga0138513_1000686462	3300011000	Soil	PHDALRTRLIVPEIGIFRLFVQFGQTPRRSVNVKDASLAAAPTA*
Ga0137448_10972591	3300011427	Soil	QRVALTHGALGTRLIVPQIGVFGFFVQFGEAARRGIDVKDASSAVVSTA*
Ga0137381_115545022	3300012207	Vadose Zone Soil	AHNTLRTRLIAPEVGIFGLFIQLCEAPGRGIDVKDASSAAESTA*
Ga0137386_112188591	3300012351	Vadose Zone Soil	LVVKRIALAHNTLRTRLIAPEVGIFGLFIQLCEAPGRGIDVKDASSAAES
Ga0150984_1092668531	3300012469	Avena Fatua Rhizosphere	LRARLVVPEIGVFGFFIQFGETPLRGIDVKDASSAAAPTA*
Ga0157282_100032051	3300012904	Soil	DMADRLELILQRVTFAHHALRPRLIVPEIGVSRFLVQFGEASRRGVDVKDASSAAARTA*
Ga0162652_1000375142	3300012941	Soil	ALRTRLIVPEIGIFRLFVQFGQTPRRSVNVKDASLAAAPTA*
Ga0126375_112778191	3300012948	Tropical Forest Soil	LLDAADGFQLIVERITLAHDTLRPRSIVPKIGVFRVFIQLGKATRSAINVKDASSAAVPTA*
Ga0157374_108017342	3300013296	Miscanthus Rhizosphere	LIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA*
Ga0075318_10792731	3300014256	Natural And Restored Wetlands	HHPLGARLVAPQRGILGLFVQLGQAPFRGIDVKDASSAARATA*
Ga0075355_12616421	3300014322	Natural And Restored Wetlands	DGLELVFQCVALAHGALGARLVAPEARIFGGFVQFGETPLRGIDVKDASSAVAPTA*
Ga0157380_102157803	3300014326	Switchgrass Rhizosphere	LIVERIALAHDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA*
Ga0182008_100925962	3300014497	Rhizosphere	VLRARLIVPEIGIFGFFIQFGETPLRCIDVKDASSAAAPTA*
Ga0182008_102826741	3300014497	Rhizosphere	LELLLDASDRFKLIVERVTFAHHALSPRLIIPEVGVFRFLVQFGEASRRSVDVKDASSAAARTA*
Ga0157379_118376712	3300014968	Switchgrass Rhizosphere	SADGLELIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA*
Ga0157376_123995001	3300014969	Miscanthus Rhizosphere	IVERIALAHDALRARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA*
Ga0157376_124809992	3300014969	Miscanthus Rhizosphere	LIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA*
Ga0132258_115041661	3300015371	Arabidopsis Rhizosphere	LRPHLIVPEIGVFGFFVQFGEASGRGVDVKDASSAAA
Ga0132256_1030084261	3300015372	Arabidopsis Rhizosphere	RLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVPTA*
Ga0132257_1009035441	3300015373	Arabidopsis Rhizosphere	LIVQRITLAHHVLRARLIVPEIGVFRFLVQFGEASRRGVDVKDASSAAARTA
Ga0132255_1006178022	3300015374	Arabidopsis Rhizosphere	LELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA*
Ga0132255_1055617411	3300015374	Arabidopsis Rhizosphere	IVERIALAHDALRARLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA*
Ga0187787_100450602	3300018029	Tropical Peatland	AADGLKLLVERITLAHYTLRSCLIVPEVGVFRLLVQLGKAPRRSVDVKDASSAAALTA
Ga0187788_105332131	3300018032	Tropical Peatland	PVLQRIALAHHALAARRIAPELGVFGLFVQLGEAALRGLDVKDASSAA
Ga0187858_106428551	3300018057	Peatland	HHALAARRIAPEIGVLGLFVQLGEAALRGVDVKDASSAVAATA
Ga0187765_100729761	3300018060	Tropical Peatland	CARLIVPQVGTFRFFVQFGEASSRGIDIKDASSAAAPTA
Ga0187765_110786561	3300018060	Tropical Peatland	LAARRIAPELGILGLFVQLGEAALRGLDVKDASSAA
Ga0184635_100020861	3300018072	Groundwater Sediment	LLFDPADCLQLIIKSVALPHDALRTRLIVPEIGIFRLFVQFGQTPRRSVNVKDASLAAAPTA
Ga0193731_10760302	3300020001	Soil	AHGALRLALIAPESGVFSRLVQFGQAARRGIDVKDASSAVQPTA
Ga0210380_102383452	3300021082	Groundwater Sediment	HDALSARLIVPEIGVFRLFIQFGKATRSGVNVKDASSAAVPTA
Ga0224552_10061051	3300022850	Soil	LVVQGVALAHGALRASLIVPECRVFGRLVQFGQAARRGIDVKDASSAGAPTA
Ga0247745_10012193	3300022898	Soil	RSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA
Ga0247791_10028191	3300023062	Soil	ELIIELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA
Ga0247789_10011353	3300023266	Soil	LILELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA
Ga0207656_101867862	3300025321	Corn Rhizosphere	VERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA
Ga0208715_10192702	3300025482	Arctic Peat Soil	DGVELIVQRVALAHGALGARRIAPEIGGFSRFVQLGKAALRGIDVKDASSAVVPTA
Ga0207926_11282872	3300025619	Arctic Peat Soil	DAADGVELIVQRVALAHGALGARRIAPEIGGFSRFVQLGKAALRGIDVKDASSAVVPTA
Ga0209484_101698591	3300025829	Arctic Peat Soil	VLQRVAFAHHALAARLVAPETGVLRLFVQLGEAAGRGVDVKDASSAAAATA
Ga0209585_101537021	3300025891	Arctic Peat Soil	LRLGLVVPESGIFGKFVQFGEAARRSIDVKDASSAARPTA
Ga0207693_101658932	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RIAFTHHALRARLVVPEIRVFRLSIQFSEALRRGVDVKDASSAAARTA
Ga0207660_109834761	3300025917	Corn Rhizosphere	GLVVPEIWVFGLFVQFGETPLRGIDVKDASSAAAPTA
Ga0207687_100748871	3300025927	Miscanthus Rhizosphere	RARLIVPEVGVFRFFIQFGKATRRGINVKDASSAAVPTA
Ga0207706_104829241	3300025933	Corn Rhizosphere	RLIVPEVGVFRFFIQLGKATRSGINVKDASSAAVRTA
Ga0207703_119495271	3300026035	Switchgrass Rhizosphere	LELIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA
Ga0208659_10129482	3300026054	Natural And Restored Wetlands	VTLAHHALRPHLIVPEIGVFRFFVQFGETSGRGVDVKDASSAAARTA
Ga0207641_107264892	3300026088	Switchgrass Rhizosphere	DRLELILQRVTFEHHALRPRLIVPEIGVFRFLVQFGEASRRGVDVKDASSAAARTA
Ga0207613_1014161	3300026743	Soil	DALRRSRPDRLELILQRVTFAHHALRPRLIVPEIGVSRFLVQFGEASRRGVDVKDASSAAARTA
Ga0207805_10263202	3300026887	Tropical Forest Soil	RARLVAPKIGIFGLFVQLGEPARRGVDVKDASSAAALTA
Ga0209418_10847801	3300027371	Forest Soil	RLVAPEIRILGLFVQLGETLLRGIDVKDASSAAAPTA
Ga0207460_1017802	3300027482	Soil	LELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAARTA
Ga0209009_10145401	3300027667	Forest Soil	LQRVALAHHALSTRLIAPETGVFRLFVQLGEAAGRGIDVKDASSAA
Ga0209074_101108181	3300027787	Agricultural Soil	LGARLIVPKVGVFGLFVQLGEAPRRGVDIKDASSAAG
Ga0209067_105814822	3300027898	Watersheds	LAHHALAARLVAPERGILGLFVQFGETPLRGIDVKDASSAAPSTA
Ga0307295_102587992	3300028708	Soil	ESITLAHDALSARLIVPEIGVFRLFIQFGKATRSGVNVKDASSAAVPTA
(restricted) Ga0255311_10183202	3300031150	Sandy Soil	RLELILQRVTFAHHALRPRLIVPEIGVFRFFVKFGEAPRRGVDVKDASSAAARTA
Ga0265325_102224001	3300031241	Rhizosphere	AHGALRLGLVVPECGIFGEFVQFGEAARRSIDVKDASSAARLTA
Ga0307442_11568461	3300031274	Salt Marsh	RARLVVPEGGILGFFVQLGQAACRGVDVKDASSAVQATA
Ga0310887_100159512	3300031547	Soil	ILELLLYTTDRLELIVERVTFAHHALRSRLIVPEIGVFRFLAQFGETSGRGVDVKDASSAAAQTA
Ga0318568_102711444	3300031819	Soil	VERITLAHDALRPRLIVPKIGVFRVFIQLGKATRSGINVKDASSAAVPTA
Ga0308176_110755311	3300031996	Soil	AHGALRALRIVPEFGLLGLFVQFGEALLRDIDVKDASSAAAPTA
Ga0318533_107182442	3300032059	Soil	LLFNAADSLELIIKRIAFTHHPLRAGLIVPEIRILRFFIQFGQAARRSINVKDASSAASPTA
Ga0318577_104073162	3300032091	Soil	HYALRPRLIVPKIGVFRVFIQLGKATRSGINVKDASSAAVPTA
Ga0307472_1000754763	3300032205	Hardwood Forest Soil	LIVERIALAHDALRARLIVPEVGVFRFFIQFGKATRSGINVKDASSAAVPTA
Ga0335078_113304372	3300032805	Soil	FAHHALRARLVVPEIGIFRLFVQLGEAAFRGVDVKDASSAVASTA
Ga0335084_112830421	3300033004	Soil	ALRARLVVPEIGIFRLFVQFGEALRRDVDVKDASSAA
Ga0335077_116558071	3300033158	Soil	LDTTDGAETVLQRVALPHDALRTRLIAPEMGVFGLFVQFGEAPLRGVDVKGASSAVRATA
Ga0316620_110755482	3300033480	Soil	LGARLIVPKIGILGLFVQLGQASLRGIDVKDASSAVLATA
Ga0316628_1022641281	3300033513	Soil	ARLVVPEIGVFRFLVQFGEAPRRGIDVKDASSAAAPTA
Ga0372943_0213998_700_822	3300034268	Soil	LRARLIVPEVGVFGLFVQFGETPLRGVDVKDASSAAASTA
Ga0364943_0051805_1_168	3300034354	Sediment	GFEPILQRIALAHGALGASLIVPETGVFGRLVQFGQTARRGIDVKDASSAAAPTA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097964

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign