NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300021518

3300021518: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR1_MetaG



Overview

Basic Information
IMG/M Taxon OID3300021518 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0131992 | Gp0256634 | Ga0224722
Sample NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR1_MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyRestricted

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Dataset Contents
Total Genome Size603299675
Sequencing Scaffolds27
Novel Protein Genes28
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria5
Not Available5
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakelake sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationIndonesia: South Sulawesi
CoordinatesLat. (o)-2.651Long. (o)121.2318Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000197Metagenome / Metatranscriptome1652Y
F001057Metagenome / Metatranscriptome791Y
F001068Metagenome / Metatranscriptome787Y
F001844Metagenome / Metatranscriptome627Y
F002505Metagenome / Metatranscriptome553Y
F003771Metagenome / Metatranscriptome469Y
F004167Metagenome / Metatranscriptome450Y
F004728Metagenome / Metatranscriptome426Y
F006851Metagenome363Y
F007038Metagenome / Metatranscriptome359Y
F009406Metagenome / Metatranscriptome318Y
F011188Metagenome / Metatranscriptome294Y
F011630Metagenome / Metatranscriptome289Y
F025574Metagenome / Metatranscriptome201Y
F026415Metagenome / Metatranscriptome198Y
F028447Metagenome / Metatranscriptome191Y
F036582Metagenome / Metatranscriptome169Y
F036908Metagenome169Y
F040773Metagenome161Y
F041359Metagenome160Y
F059728Metagenome133Y
F068909Metagenome / Metatranscriptome124Y
F070322Metagenome123Y
F091543Metagenome107Y
F094045Metagenome106Y
F097376Metagenome / Metatranscriptome104Y
F098838Metagenome / Metatranscriptome103Y
F100598Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224722_1001310All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria13839Open in IMG/M
Ga0224722_1019143All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2689Open in IMG/M
Ga0224722_1020336All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium2585Open in IMG/M
Ga0224722_1024658All Organisms → cellular organisms → Bacteria → Proteobacteria2280Open in IMG/M
Ga0224722_1026597All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2173Open in IMG/M
Ga0224722_1029057All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2052Open in IMG/M
Ga0224722_1032206Not Available1924Open in IMG/M
Ga0224722_1039020All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1706Open in IMG/M
Ga0224722_1042578All Organisms → cellular organisms → Bacteria1615Open in IMG/M
Ga0224722_1043075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1603Open in IMG/M
Ga0224722_1054594All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1388Open in IMG/M
Ga0224722_1060230All Organisms → cellular organisms → Bacteria1308Open in IMG/M
Ga0224722_1098320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium981Open in IMG/M
Ga0224722_1118188Not Available880Open in IMG/M
Ga0224722_1129573All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi834Open in IMG/M
Ga0224722_1159671All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria738Open in IMG/M
Ga0224722_1174854All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus700Open in IMG/M
Ga0224722_1180908All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria686Open in IMG/M
Ga0224722_1188738Not Available669Open in IMG/M
Ga0224722_1226585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria601Open in IMG/M
Ga0224722_1231849All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria593Open in IMG/M
Ga0224722_1237012Not Available586Open in IMG/M
Ga0224722_1245285All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium574Open in IMG/M
Ga0224722_1253776All Organisms → cellular organisms → Bacteria563Open in IMG/M
Ga0224722_1254915All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium561Open in IMG/M
Ga0224722_1280872All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria530Open in IMG/M
Ga0224722_1290039Not Available520Open in IMG/M

Sequences

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold IDProtein IDFamilySequence
Ga0224722_1001310Ga0224722_100131010F094045MKYLSIFFTILFIWIAVIFMALTRDRTSEIFQLYLAVMLSTVVLFLIGFAKK
Ga0224722_1019143Ga0224722_10191433F011188METYNIYMDEAPAAGDVNGDEGWEVEFRVVGQSIDDGDPENNAVLAGLDLVDLINLRDALQQEIDNFALTALEAQAMVSDSGEELMP
Ga0224722_1020336Ga0224722_10203362F001068VSTSPSILDELRQQYEAARTSDHGHSDVEGYEQINARMRKSYAWLDKAFSYLDGVKPAIAHRYDVGHGLVFENTRFARGYVGQHERRIVGFPVIDEINVYYEIAAAKPLTIEVAPGGVQMAEKSLDDAGLQYTCRRVEDGGGVVRKCVISVPPAIPAKVGFNVDYQSGMVTVALVNVDRFDRVTLAFHSQAIDETVLDDLLKFILGRDAAFLRRAPLAGLHGTPRG
Ga0224722_1024658Ga0224722_10246581F002505MFGFLTSGTKDFADPLVTAKSTAAWLHQLPALDVIGRQQHVMRAFDAMRQSRKPVDIPRVQAVEFLDAALGADRRQLIKQYVENYDGNPKLAERIWQAIYDLSQGFMYAYQTALEEALRQAQNVRWKPMPPLLFGRLVHYYGTDAKLRVFRFERWIPAKWMELHRTYLRACEIGIERVPAVLHSSGPNATQWTVEQEYLNVLLVHQLNTGNMSPPQLDWAMSQLRAWSRRLSLDAVPRSPEGFFVDIAGKTGLVRRTGSDSGSMLRYLDTTPLAESLERAIGALR
Ga0224722_1026597Ga0224722_10265971F006851VARAAKLDLRSFQQELASRLATKTAAQVESSRLGLSCGGDRWLVRLADAGEVVAM
Ga0224722_1029057Ga0224722_10290574F036582VAEPSRFQHSLAEFCQATAAWRRRKAEEYDRDERNLRTAAALDELAAHVLSLPADDARVLRLQRLAGTGEDFTPDQRVLYELGRFRFHHPETGLDPFLDTLVTLAEAD
Ga0224722_1032206Ga0224722_10322062F059728VQQRFGADKFKVVLIDVDPEYYKKPEEYLPKAKKILDKQKLDWPNTLAPKGFSDVVRTFNLSGYGNIVVDARGIVRGVNAHDKEFVSLVEKIMGASEAGKPEK
Ga0224722_1039020Ga0224722_10390201F001844VVHPMFRWFRSFSDPLASAGNATRWIGQLPTVDAASLQKEALDLVATFPGVKREAGPGQVEALLRIDGRVEPVIADLTRQYAQNYQKSTNIESRLWHSVFDLVKAFIAAYQVALKAGYPRADNKRWRAILPWVIVRLAHYRGLDGKYRLFRYSHWIPAQWREFHELYEFARMRGWQREQLVFGVGAFAKPGVSFEQEYIKTLLLMRLDSGNFTPDQVEWVARQIEDWAPALTLTPPPSEGSPFVVDLAGSAGLRRRDRAQSGGRVMYLDPTPLYGRVVERLRWLPEQDTDTAGAGELPVREQRLLLMRLAALYGPDAIAKAPRAPR
Ga0224722_1042578Ga0224722_10425782F004728MSKAIASLVRLGVGAQQDRKQEFLRKLKANLANGDPNAQDRLVDEFQALILGR
Ga0224722_1043075Ga0224722_10430752F007038MARRVFLDTEWTAAPWSGGSDLMWIGLADEEGRSWYGISSEVEIDPTTNPFVSGAFRLIDRDEPRMSRQHLAQAVLDFCGDVDEFWAWVPTIESFADYSRLGDQALEVFQKCWDVDLQMLKSLISPWPVRWPNELNDLNRAAAAAGVQIPPRAANHLHPRVHAEWNRKLFGLIQAVRRSD
Ga0224722_1054594Ga0224722_10545943F025574MSGVDQPAPESQLGERNLTTLHAVAQALAIGPMFSVALILGGISRPDIGAGWNAALAVLIATFGVLAIGYVVAMYARRFSGAGAVYEYLTHGAHPWLGVLTAGFFFVGVLFLG
Ga0224722_1060230Ga0224722_10602302F001057VKTSIELDASNRVVLSRELRRAAGIPRRQRLLAYATPGRIVLEMEANTSGRLVKRGKLKVWTGAVPLTPIEEAVEQSRHYGR
Ga0224722_1098320Ga0224722_10983201F028447MKDEARAENRLWVPDHPDGSGWADVDWVSAAKGSRYHYRHARSIQEERGSLPSYYRVVTRLESEVLHPHENSYFVSWEQLADFLAEVCLAGGAETIWHVEGCAAPPDESRVAPIKSG
Ga0224722_1118188Ga0224722_11181881F091543MYYEPDTVWGRTIEGDDEVAVPKSGLSLTQRRVLRDLAQPRTFASIAAKQRMDAPKLENELIWLAERKLVAYQRPGTDGPRTAPRIHQPAANAASVADEPWRRPPLAVCLLAVALGIGSVLVILH
Ga0224722_1129573Ga0224722_11295732F100598MDEFTIGAEVRVAMPRGVSKRGIPGISVLYSTWPEARFDGAVGTIVDIDPRSTYGIPLYLIDFSGHKNRVAIPWQRQWFRQEWIVPEGERVERPLATEGALVAASGAGKTTLSDE
Ga0224722_1159671Ga0224722_11596711F011630LMFGFGNNAREPLADVKSVERWLASFPGNDPLTIHSEVLRELGRIAEPTAKRTPQRLEAVFHLDRHCASLRNNLTIQYIEHATRSSRIEHQLWSALFNLTQAFLFAYYAFAREVSNHAQSAKWQQLLPELLCRQVSHMGLDAKIRLYRYEQWIPAKWAELHALFTLACSRQIDRAPLSRGASGNTTIEHEYLVALLLQLMNAGNMTARHLEWVANELDEWAAPLRLSLEPSSVTSFYVDLGGREG
Ga0224722_1174854Ga0224722_11748541F040773MGYGIAIFAVVAIGCVIAGAVAMRRRGDAGDDDTMSDAEFRRIEGFDEP
Ga0224722_1176065Ga0224722_11760651F000197MTPASGPWPLVYGAAMAVTGVANLAVKVPDLDPAIQFYERAGAEVRDRAPWYGGERVDVYLGVLMITLFTRAIYEDDADLPDSGFLHVATFTDDLDAELEGHDVVWGPAIVEGTFGKRRIVFVDAPGNMRLEFMEQ
Ga0224722_1180908Ga0224722_11809082F036908MLLALVCVAAGAAAGPVDLYLTGPKFCPQDRPRNAPRISEVQAIERTKAMLPDDFCGPSLFVSGCTFDVENEYDSWRVYAHQYKTVGGRQDKGGLKHTYLILDAVGNCLAHIPGTEFGAL
Ga0224722_1188738Ga0224722_11887383F009406MKILGTFELERLVREAFPAKRLFSAETELGAAARRLPLVAFVHGGADPFLDRQFDAWLEGKPTYVALHQLLNRLC
Ga0224722_1226585Ga0224722_12265851F068909SPKPPCPKCGRAEVERLWSTINTEWLPSDVAWDRVGRTWD
Ga0224722_1231849Ga0224722_12318492F003771ARFHGLYLPPPSRPDKPLTVKTLIVPTQEYSEGRSVILTTGRSVYTVALRHLVEQRADWSWAAIQIVEKKARI
Ga0224722_1237012Ga0224722_12370122F026415MSAAGTISVTVEDFTGQVRRKARGIPTDATVGDLVGSLMHELRLPANDSQGRSLTYSARARGESLAENDRVGDVLVEDDVVTLTQNVTAG
Ga0224722_1245285Ga0224722_12452852F070322MLLSGIGPRLIGLVVGSAVPFAALIGFGLWSQWRNDQAAAVERALGEARLIASQVDDHFSNLR
Ga0224722_1253776Ga0224722_12537762F004167MTNGAAAEPQAVVFVSDRSGAALRRRERCLKLAGIWHAIDAERRPSGTYYKLCVRQSDAVAAHLALQMGGCGRSLRLQDNRTSVSAALREIARAAWDELLLLLARVADVVRDVAPRLLTG
Ga0224722_1254915Ga0224722_12549152F098838MISGNLGEDFGVLADTVEVVIAVILILGGIYITYAIQKWADRAGEQPPADNQGLSGAAQQYEQNTLRG
Ga0224722_1280872Ga0224722_12808721F041359MFGFGNNAREPLADVKSVERWLASFPGNDPLTIHSEVLRELGRIAEPTAKRTPQRLEAVFQLDRHCASLRNNLTIQYIEHATRSSRIEHQLWSALFN
Ga0224722_1290039Ga0224722_12900391F097376MKKAVAPKKNKTAKDVVPQDKQTKAGPVELDLETLKKVSGGLPRGGWIREK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.