Basic Information | |
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Family ID | F094045 |
Family Type | Metagenome |
Number of Sequences | 106 |
Average Sequence Length | 52 residues |
Representative Sequence | MKYASIFFTILFIWVAVILMALTRRNSSEIFELYLAVIASTLALFLIGFARK |
Number of Associated Samples | 87 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 20.75 % |
% of genes near scaffold ends (potentially truncated) | 20.75 % |
% of genes from short scaffolds (< 2000 bps) | 65.09 % |
Associated GOLD sequencing projects | 74 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.64 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (84.906 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (6.604 % of family members) |
Environment Ontology (ENVO) | Unclassified (47.170 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (49.057 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 56.25% β-sheet: 0.00% Coil/Unstructured: 43.75% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.64 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater And Sediment Freshwater Freshwater Lake Freshwater Sediment Peatland Bog Groundwater Groundwater Freshwater Freshwater Wetland Hot Spring Sediment Saline Lake Soil Vadose Zone Soil Terrestrial Soil Compost Glacier Forefield Soil Agricultural Soil Surface Soil Arctic Peat Soil Soil Soil Corn Rhizosphere Switchgrass Rhizosphere Soil Soil Palsa Plant Litter Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Populus Endosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Sugarcane Root And Bulk Soil Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Compost Anaerobic Digestor Sludge |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
ZC3D78_1092642 | 3300000476 | Compost | MKYLSIFFTILFVWVAVLLMALTRDNTTEIFQLYLAVMVSTVVLFLIGFAKK* |
JGIcombinedJ13530_1098260532 | 3300001213 | Wetland | MKYISIFFTILFIWLAVILMAFARTHTGEIFKLYLAVMISTLVLFLIGFAKK* |
JGI20206J14855_10210433 | 3300001408 | Arctic Peat Soil | MKYASTFFTILLIWIAVILMSLSVHNSGQVFELFLAVMVSTLVLFLIGFGRS* |
JGI24740J21852_100367354 | 3300001979 | Corn Rhizosphere | MKYASIFATILFIWIAVIIMALTTTNANQIYGLYLAGIISTLALFVIGFARK* |
JGI24770J26754_101285152 | 3300002184 | Freshwater And Sediment | MKYISIFFTILLIWIAIVLMAFTRSSATEVFELFLAAIASTVILFLIGFKRK* |
rootH2_1000031135 | 3300003320 | Sugarcane Root And Bulk Soil | MKYASVFVTIVLIWIAIILMALTRKSPNDVFELYVSAIVATLALFMIGFRKR* |
rootH2_102654062 | 3300003320 | Sugarcane Root And Bulk Soil | MKYASIFVTIVLIWVAVILMAVTRRDPTDIFELYVSGIVSTLVLFLIGFSKR* |
Ga0063356_1006088022 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MKYISAFITILIIWIAAILIALAHSEASEIFALYLVVMISTLALFLIGFSKK* |
Ga0070658_102033142 | 3300005327 | Corn Rhizosphere | MKYVSVFATIVLIWIAVILMAATRSVPSEIFKLYVAAIISTLALFVIGFTRG* |
Ga0070658_114403582 | 3300005327 | Corn Rhizosphere | MKYASVFVTIVLIWIAVILMAATRSAPDEIFKLYIAAIISTLALFVIGFARK* |
Ga0068869_1000301176 | 3300005334 | Miscanthus Rhizosphere | MKYASIFATIVLIWLAVVLMATTRGDAKEVFELYVTAIISTLVLFVIGFGKR* |
Ga0070668_1001185464 | 3300005347 | Switchgrass Rhizosphere | MKYVSIFFTILFIWIAVIFMSFTRSDTNEIFALYLAVMGSTVVLFLIGFGRK* |
Ga0070668_1001735861 | 3300005347 | Switchgrass Rhizosphere | MKYISIFFTILFIWIAVIFMAFTRDNTNEIFALYLAVMTSTVILFLIGFAKK* |
Ga0070668_1011073322 | 3300005347 | Switchgrass Rhizosphere | MKYVSIFFTILFIWIAVIFMAFSRSNTNEIFELYLAVMGSTVVLFLIGFGRK* |
Ga0070688_1011427062 | 3300005365 | Switchgrass Rhizosphere | MKYASIFFTILIIWIATILMALTREDPNEIFELYLAVTICTLALFLIGFAKK* |
Ga0070663_1002912712 | 3300005455 | Corn Rhizosphere | MKYASIFATILLIWLAVILMAITRKDPTDIFELYVAAIISTAALFLIGFSKK* |
Ga0070663_1011369122 | 3300005455 | Corn Rhizosphere | MKYLSIFATILLIWVAVILMALTSNSSQQIYELYLAVIVSTVALFLIGFARK* |
Ga0070679_1009047252 | 3300005530 | Corn Rhizosphere | MKYASIFLTIVFIWIAVIIMAFTRSSGDQVFDLYLAAIIATLALFIIGFIRR* |
Ga0070735_109245831 | 3300005534 | Surface Soil | MKYASIFITILLIWVAVILMALTRSKASDIFELYLAVIVSTLALFLI |
Ga0068853_1000776472 | 3300005539 | Corn Rhizosphere | MKYASIFATILFIWIATIIMAATTTDAHQIYGLYLATIISTLALFIIGFARK* |
Ga0068855_1000222176 | 3300005563 | Corn Rhizosphere | MKYASIFGTILFIWIAVIIMAATTTDAHQIYGLYLACIVSTLALFIIGFARK* |
Ga0068863_1021004431 | 3300005841 | Switchgrass Rhizosphere | MEQMKYLSIFFTILFIWVAVILMALTRNNTSQIFQLYLAVMVSTVVLFLIGFAKK* |
Ga0068858_1001105494 | 3300005842 | Switchgrass Rhizosphere | MEMKYISIFFTILFIWIAVIFMAFTRDNTNEIFDLYLAVMASTLVLFLIGFGKK* |
Ga0068858_1001762182 | 3300005842 | Switchgrass Rhizosphere | MGQMKYLSIFFTILFIWVAVILMALTRNNTSQIFQLYLAVMVSTVVLFLIGFAKK* |
Ga0068862_1001178434 | 3300005844 | Switchgrass Rhizosphere | MADPGVAAWRAGIECDKITIEMKYVSIFFTILFIWIAVIFMSFTRSDTNEIFALYLAVMGSTVVLFLIGFGRK* |
Ga0075363_1001549252 | 3300006048 | Populus Endosphere | MKYASIFATILLIWLAVILMAITRRDATDIFELYLTGIVSTMALFLIGFSRRR* |
Ga0097621_10000032215 | 3300006237 | Miscanthus Rhizosphere | MKYASIFATIVLIWIAIILMALTRKSPSDIFELYVSAIVSTLALFLIGFSKR* |
Ga0101571_108967022 | 3300006627 | Soil | MKYVSIFATILLIWVAVILMALTSNSSQQIYELYLAVIVCTVALFLIGFARK* |
Ga0079223_109298591 | 3300006801 | Agricultural Soil | MKYLSIFFTILFIWVAILLMAVTRDDTGEIFQLYLAVMASTVILFLIGFAKK* |
Ga0073934_100553425 | 3300006865 | Hot Spring Sediment | MRYASIFFTILLIWVAIIFMALTRDDPQEIMQLFLAVNFSTLILFLIGFAKK* |
Ga0105048_110561832 | 3300009032 | Freshwater | MKYISIFFTILLIWIAVILMALTREAPTEIFQLFLAAIVSTVVLFLIGFSRK* |
Ga0105046_107195822 | 3300009084 | Freshwater | AIIIMAFTRENTTEIFQLYLAVMGCTIILFLIGFAKK* |
Ga0105240_101935034 | 3300009093 | Corn Rhizosphere | MKYASIFATILLIWVAVILMAFTSNSATQIYELYLAVIVSTVALFLIGFARK* |
Ga0079224_1013811762 | 3300009095 | Agricultural Soil | MKYLSIFFTILFIWVAVLLMALTRDDTSEIMQLYLVVMLSTIVLFLIGFAKK* |
Ga0079224_1028951812 | 3300009095 | Agricultural Soil | MKYLSIFFTILFIWIAVLLMALTRDDTTEIFQLYLAVMVSTVVLFLIGFAKK* |
Ga0079224_1038911782 | 3300009095 | Agricultural Soil | MKYLSIFFTILFIWVAVILIALTRESSGEIMQLYLAVMVSTVILFMIGFAKK* |
Ga0105245_105654832 | 3300009098 | Miscanthus Rhizosphere | FLCLSCYTKDTEMKYASIFATILLIWLAVILMAITRKDPTDIFELYVAAIISTAALFLIGFSKK* |
Ga0105245_107921572 | 3300009098 | Miscanthus Rhizosphere | MKYASIFFTILIIWIATILMALTRSNPDEIFELYLAVTVSTLALFLIGFAKK* |
Ga0114981_105814271 | 3300009160 | Freshwater Lake | MKYLSIFLTILFIWIAVILMAFTREKTNEIFQLYLAVMLSTVVLFLIGFAKK* |
Ga0114940_101345991 | 3300009448 | Groundwater | LFIWIAVIFMAFTRDNTNEIFALYLAVMTSTVILFLIGFAKK* |
Ga0105249_130200611 | 3300009553 | Switchgrass Rhizosphere | CDKITIEMKYVSIFFTILFIWIAVIFMSFTRSDTNEIFALYLAVMGSTVVLFLIGFGRK* |
Ga0116142_100552452 | 3300009685 | Anaerobic Digestor Sludge | MKYLSIFFTILFIWVAVILMALTRENSSEIFQLYFVVMVSTVILFLIGFAKK* |
Ga0136270_10002235 | 3300010223 | Freshwater | MKYASIFFTILFIWLAIIIMAFSSPSTKEVFQLYLTVMLSTIVLFLIGFARK* |
Ga0134126_103131734 | 3300010396 | Terrestrial Soil | MKYASIFFTILLIWVAVILMALTQSNGHQVFELYLAVMVSTLALFLIGFARK* |
Ga0136596_10123604 | 3300011187 | Saline Lake | MRYASIFATILLIWIAVVIMAFTRNSPNEIFELYLAVVVSTLFLFMIGFARR* |
Ga0136596_10867222 | 3300011187 | Saline Lake | MRYASIFVTILLIWIAVIVMAFTRANPNEIFELYLAVIASTLILFLIGFARK* |
Ga0137407_112933282 | 3300012930 | Vadose Zone Soil | MKYASIFATIVLIWVATILMALTRKNPNDIFDLYVAAIVSTLALFLIGFRKR* |
Ga0164242_100153064 | 3300012942 | Compost | MKYASIFATILFIWVAVVIMALTTSDVHQIYWLYLSGIISTLALFVIGFARK* |
Ga0157369_110560111 | 3300013105 | Corn Rhizosphere | MKYASIFATILFIWIAVIIMAFTTKSADQLYALYLACIVSTLALFLIGFARK* |
Ga0157374_1000070918 | 3300013296 | Miscanthus Rhizosphere | MKYASIFATILFIWIAVIIMALTTTDAKQIYGLYLACIVSTLALFLIGFARK* |
Ga0157374_100562514 | 3300013296 | Miscanthus Rhizosphere | MREMKYASIFATILLIWFAVILMAITRRDPSDIFKLYLAAIISTVALFLIGFTKR* |
Ga0157374_110069901 | 3300013296 | Miscanthus Rhizosphere | MKYVSVFATIVLIWTAVILMAVTRKDAGQIFELYISAIVSTIAL |
Ga0157378_100885872 | 3300013297 | Miscanthus Rhizosphere | MKYASIFFTILIIWIATILMALTRSDPGEIFDLYIAVTVSTLALFLIGFAKK* |
Ga0157378_129136842 | 3300013297 | Miscanthus Rhizosphere | MKYASIFFTILIIWIATILMALTRHNPNEIFELYLAVTISTLALFLIGFAK |
Ga0181530_101063074 | 3300014159 | Bog | MKYASIFFTILFIWVAVILMALTRRNSSEIFQLYLAVIASTLALFLIGFARK* |
Ga0181523_105090952 | 3300014165 | Bog | KYASIFFTILFIWVAVILMALTRRNSGEIFELYLAVIASTLALFLIGFARK* |
Ga0181526_106067892 | 3300014200 | Bog | MKYASIFFTILFIWVAVILMALTRRNSSEIFELYLAVIASTLALFLIGFARK* |
Ga0172379_100876211 | 3300014208 | Groundwater | ITILFIWVAVILMALTRHDAKEIFQLYIAVMVCTLALFLIGFGKK* |
Ga0163163_100296775 | 3300014325 | Switchgrass Rhizosphere | MEQMKYLSIFFTILFIWVAVILMALTRDNTSQIFQLYLAVMVSTIVLFLIGFAKK* |
Ga0163163_100929872 | 3300014325 | Switchgrass Rhizosphere | MKYASIFATIVLIWIAIILMATTRSGATQAFELYITAIICTFALFIIGFSRR* |
Ga0157377_100822593 | 3300014745 | Miscanthus Rhizosphere | MKYVSVFATIVLIWTAVILMAVTRKDAGQIFELYISAIVSTIALFLIGFSKQ* |
Ga0157379_125550101 | 3300014968 | Switchgrass Rhizosphere | MRYASIFATILFIWVAVIVMALTTNSASQIYGLYLAAIVSTVAMFLI |
Ga0167654_10475012 | 3300015084 | Glacier Forefield Soil | MKYVSIFFTILLIWIAVILMAFTRSDTNQLFQLYLTAIVSTVVLFLIGFAKK* |
Ga0187847_100202465 | 3300017948 | Peatland | MKYASTFFTILLIWVAVILMSLTINNSGQVFELFVAVMISTLMLFLIGFGGRA |
Ga0193753_100518862 | 3300020034 | Soil | MKYISIFFTILFIWIAVIFMAFSRNNTNEIFELYLAVMFSTLILFLIGFGKK |
Ga0193753_101869263 | 3300020034 | Soil | MRYASIFFTILFIWLAVILIALTRHSSGEIFELYLAVMVCTVLLFLIGFGKKQ |
Ga0210401_116025522 | 3300020583 | Soil | FMKYASTFFTILLIWIAVILMSLTVHDSGQVFELYVAVMVSTLLLFLIGFGRA |
Ga0210388_111416871 | 3300021181 | Soil | YNSKSMKYASIFFTIVLIWIAVILMAASRSSSGEIFQLYVAAIISTLALFLIGFTKK |
(restricted) Ga0224722_100131010 | 3300021518 | Freshwater Sediment | MKYLSIFFTILFIWIAVIFMALTRDRTSEIFQLYLAVMLSTVVLFLIGFAKK |
Ga0247817_102837792 | 3300022751 | Plant Litter | MKYLSIFFTILFIWVAVILMAITRDDSAEIFQLYLAVMVSTLVLFLIGFAKK |
Ga0224558_100478512 | 3300023090 | Soil | MKYASIFFTILFIWVAVILMALTRRNSSEIFELYLAVIASTLALFLIGFARK |
Ga0247736_100770752 | 3300023095 | Plant Litter | MKYISIFFTILFIWIAVIFMAFSRSNTNEIFELYLAVMVSTLVLFLIGFGKK |
Ga0209172_100732653 | 3300025310 | Hot Spring Sediment | MRYASIFFTILLIWVAIIFMALTRDDPQEIMQLFLAVNFSTLILFLIGFAKK |
Ga0209542_102794802 | 3300025323 | Soil | MRYASIFFTILFIWLAVVLMALTRHNSSEIFELYIAVMICTVLLFLIGFGKK |
Ga0209587_11988382 | 3300025721 | Arctic Peat Soil | MKYVSIFFTILLIWIAIILMAITRNNPTEIFELFLAAIGSTVVLFLIGFARK |
Ga0209096_11068791 | 3300025859 | Anaerobic Digestor Sludge | MKYLSIFFTILFIWVAVILMALTRENSSEIFQLYFVV |
Ga0209605_10870051 | 3300025861 | Anaerobic Digestor Sludge | LFIWIAVLLMALTRDDTTEIFQLYLAVMVSTVVLFLIGFAKK |
Ga0207695_102421842 | 3300025913 | Corn Rhizosphere | SIFATILLIWVAVILMAFTSNSATQIYELYLAVIVSTVALFLIGFARK |
Ga0207652_110173352 | 3300025921 | Corn Rhizosphere | MKYASIFLTIVFIWIAVIIMAFTRSSGDQVFDLYLAAIIATLALFIIGFIRR |
Ga0207687_10000008133 | 3300025927 | Miscanthus Rhizosphere | MKYASIFATIVLIWIAIILMALTRKSPSDIFELYVSAIVSTLALFLIGFSKR |
Ga0207687_109737533 | 3300025927 | Miscanthus Rhizosphere | MKYASIFFTILIIWIATILMALTRSNPDEIFELYLAVTVSTLALFLIGFAKK |
Ga0207687_111884871 | 3300025927 | Miscanthus Rhizosphere | MRYASIFFTILFIWLAVILMALTRHKSGEIFELYIAVMTCTVLL |
Ga0207689_108987542 | 3300025942 | Miscanthus Rhizosphere | MKYASIFATIVLIWLAVVLMATTRGDAKEVFELYVTAIISTLVLFVIGFGKR |
Ga0207667_117503021 | 3300025949 | Corn Rhizosphere | MKYASIFGTILFIWIAVIIMAATTTDAHQIYGLYLACIVSTLALFIIGFARK |
Ga0207651_120996991 | 3300025960 | Switchgrass Rhizosphere | SKCCIINVIMKYASIFFTILIIWIATILMALTRTNPNEIFELYLAVIISTLALFLIGFAK |
Ga0207668_101053894 | 3300025972 | Switchgrass Rhizosphere | MKYVSIFFTILFIWIAVIFMSFTRSDTNEIFALYLAVMGSTVVLFLIGFGRK |
Ga0207668_101586172 | 3300025972 | Switchgrass Rhizosphere | MKYISIFFTILFIWIAVIFMAFTRDNTNEIFALYLAVMTSTVILFLIGFAKK |
Ga0207658_101275912 | 3300025986 | Switchgrass Rhizosphere | MGQMKYLSIFFTILFIWVAVILMALTRNNTSQIFQLYLAVMVSTVVLFLIGFAKK |
Ga0207703_100899462 | 3300026035 | Switchgrass Rhizosphere | MEMKYISIFFTILFIWIAVIFMAFTRDNTNEIFDLYLAVMASTLVLFLIGFGKK |
Ga0207639_100550544 | 3300026041 | Corn Rhizosphere | MKYASIFATILFIWIATIIMAATTTDAHQIYGLYLATIISTLALFIIGFARK |
Ga0207702_120756261 | 3300026078 | Corn Rhizosphere | IVLIWVAVILMATTRHDPTQIFQLYLTAIVCTIALFFIGFARR |
(restricted) Ga0247836_12036982 | 3300027728 | Freshwater | MKYLSIFFTILFIWIAVILMALTRDKTNEIFQLYLAVMLSTVVLFLIGFAKK |
Ga0209166_100493671 | 3300027857 | Surface Soil | MKYASIFATIVLIWVAIILMATTRSAVHQIFELYITGIVSTFALFIIGFSRR |
Ga0209023_1000137917 | 3300027870 | Freshwater And Sediment | MKYISIFFTILLIWIAIVLMAFTRSSATEVFELFLAAIASTVILFLIGFKRK |
Ga0306906_10316723 | 3300028374 | Saline Lake | MRYASIFATILLIWIAVVIMAFTRNSPNEIFELYLAVVVSTLFLFMIGFARR |
Ga0268265_100863462 | 3300028380 | Switchgrass Rhizosphere | MADPGVAAWRAGIECDKITIEMKYVSIFFTILFIWIAVIFMSFTRSDTNEIFALYLAVMGSTVVLFLIGFGRK |
(restricted) Ga0247832_11233351 | 3300028557 | Freshwater | YDKISYRMKYLSIFFTILFIWIAVILMALTRDKTNEIFQLYLAVMLSTVVLFLIGFAKK |
(restricted) Ga0247844_100122443 | 3300028571 | Freshwater | VILMALTRDKTNEIFQLYLAVMLSTVVLFLIGFAKK |
Ga0265338_1000160213 | 3300028800 | Rhizosphere | MKYASVFATIVLIWIAVILMAVTRTAAHKIFELYLTAIFSTLVLFLIGFTRS |
Ga0265338_101408743 | 3300028800 | Rhizosphere | MKYASIFFTILLIWIAVILMALTRTNANDIFDLYLAVIVSTLALFLIGFARK |
Ga0311371_111383231 | 3300029951 | Palsa | IVLIWIAIILMAATRSVPSEIFKLYVAAIISTLSLFLIGFTRS |
Ga0265331_101702772 | 3300031250 | Rhizosphere | MKYISIFFTILLIWVAVILMAFTRNDSREIFELFLAAIASTVVLFLIGFTRK |
Ga0302326_108251402 | 3300031525 | Palsa | MKYASIFATILMIWVAVILMAVTRKSAHEIFDLYVSAILSTLALFLIGFSKR |
Ga0335394_107102952 | 3300032456 | Freshwater | MLPMKYASIFFTILFIWLAIIIMAFTRSDTNEIFQLYLVVMACTVILFLIGFAKK |
Ga0335074_114694441 | 3300032895 | Soil | MKYASIFVTIVLIWIAVILMAVTRHQANAIFELYVAAMASTLMLFLIGFSRK |
Ga0335072_100808414 | 3300032898 | Soil | MKYVSVFATIVLIWIAVILMAATRSVPSEIFKLYIAAIISTLALFLIGFTRA |
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