Metagenome Family F091543

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F091543
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	122 residues
Representative Sequence	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT
Number of Associated Samples	86
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	61.68 %
% of genes near scaffold ends (potentially truncated)	39.25 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (59.813 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (17.757 % of family members)
Environment Ontology (ENVO)	Unclassified (65.421 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (78.505 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.99% β-sheet: 5.23% Coil/Unstructured: 60.78%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01171	ATP_bind_3	24.30
PF00246	Peptidase_M14	14.95
PF01656	CbiA	1.87
PF00300	His_Phos_1	1.87
PF07690	MFS_1	0.93
PF00694	Aconitase_C	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	24.30
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	24.30
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	24.30
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	24.30
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	24.30
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	24.30

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
All Organisms	root	All Organisms	40.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
cellular organisms	root	All Organisms → cellular organisms	40.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.38 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.04 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1.87 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	19.63 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	1.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	10.28 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	1.87 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	1.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	1.87 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	1.87 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Panarthropoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda	1.87 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Arthropoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	1.87 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Mandibulata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata	1.87 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Pancrustacea	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea	1.87 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Hexapoda	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda	1.87 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Insecta	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta	1.87 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Dicondylia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia	1.87 %
asterids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Pterygota	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota	1.87 %
campanulids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Palaeoptera	infraclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera	1.87 %
Asterales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Ephemeroptera	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera	1.87 %
Asteraceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Furcatergalia	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia	1.87 %
Asteroideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Scapphodonta	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta	1.87 %
Anthemideae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Ephemeridae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae	1.87 %
Anthemidinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Ephemera	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera	1.87 %
Tanacetum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.81 %
Ephemera danica	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	1.87 %
Tanacetum cinerariifolium	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_12787850	Not Available	512	Open in IMG/M
3300000559\|F14TC_108921154	Not Available	657	Open in IMG/M
3300005328\|Ga0070676_10382800	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300005331\|Ga0070670_100092263	All Organisms → cellular organisms → Bacteria → Proteobacteria	2604	Open in IMG/M
3300005331\|Ga0070670_100232859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1603	Open in IMG/M
3300005333\|Ga0070677_10636070	Not Available	595	Open in IMG/M
3300005338\|Ga0068868_101257951	Not Available	686	Open in IMG/M
3300005340\|Ga0070689_100136327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1971	Open in IMG/M
3300005340\|Ga0070689_100781398	Not Available	839	Open in IMG/M
3300005343\|Ga0070687_100383298	Not Available	917	Open in IMG/M
3300005344\|Ga0070661_100737229	Not Available	805	Open in IMG/M
3300005347\|Ga0070668_100299004	Not Available	1349	Open in IMG/M
3300005347\|Ga0070668_100508253	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300005353\|Ga0070669_100653288	Not Available	885	Open in IMG/M
3300005354\|Ga0070675_100573675	Not Available	1022	Open in IMG/M
3300005355\|Ga0070671_101113748	Not Available	694	Open in IMG/M
3300005367\|Ga0070667_101068871	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300005367\|Ga0070667_101192668	Not Available	712	Open in IMG/M
3300005455\|Ga0070663_100058944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2759	Open in IMG/M
3300005456\|Ga0070678_100187077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1700	Open in IMG/M
3300005457\|Ga0070662_100895520	Not Available	757	Open in IMG/M
3300005459\|Ga0068867_100632537	Not Available	937	Open in IMG/M
3300005539\|Ga0068853_100247299	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1636	Open in IMG/M
3300005543\|Ga0070672_100623692	Not Available	940	Open in IMG/M
3300005547\|Ga0070693_100380432	Not Available	974	Open in IMG/M
3300005564\|Ga0070664_100504978	Not Available	1115	Open in IMG/M
3300005577\|Ga0068857_100867916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	864	Open in IMG/M
3300005616\|Ga0068852_100602835	Not Available	1103	Open in IMG/M
3300005617\|Ga0068859_101400674	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300005617\|Ga0068859_102171014	Not Available	613	Open in IMG/M
3300005719\|Ga0068861_102562114	Not Available	514	Open in IMG/M
3300005764\|Ga0066903_102314245	Not Available	1038	Open in IMG/M
3300005834\|Ga0068851_10299273	Not Available	925	Open in IMG/M
3300005840\|Ga0068870_10664755	Not Available	715	Open in IMG/M
3300005841\|Ga0068863_100066355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3413	Open in IMG/M
3300005841\|Ga0068863_100158344	Not Available	2168	Open in IMG/M
3300005841\|Ga0068863_100510261	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300005841\|Ga0068863_102438438	Not Available	532	Open in IMG/M
3300005843\|Ga0068860_102821809	Not Available	503	Open in IMG/M
3300005844\|Ga0068862_100029669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4609	Open in IMG/M
3300006844\|Ga0075428_102227203	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300006852\|Ga0075433_10829538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	807	Open in IMG/M
3300006854\|Ga0075425_102248746	Not Available	607	Open in IMG/M
3300006954\|Ga0079219_10296051	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300009094\|Ga0111539_12412661	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300009156\|Ga0111538_10383053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1781	Open in IMG/M
3300009156\|Ga0111538_11780967	Not Available	775	Open in IMG/M
3300009870\|Ga0131092_10660698	Not Available	899	Open in IMG/M
3300014325\|Ga0163163_12176559	Not Available	614	Open in IMG/M
3300014326\|Ga0157380_10315566	All Organisms → cellular organisms → Bacteria → Proteobacteria	1447	Open in IMG/M
3300014326\|Ga0157380_11726920	Not Available	684	Open in IMG/M
3300014968\|Ga0157379_10290641	Not Available	1488	Open in IMG/M
3300014969\|Ga0157376_11377505	Not Available	736	Open in IMG/M
3300015200\|Ga0173480_10467348	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300015371\|Ga0132258_11937138	Not Available	1483	Open in IMG/M
3300015371\|Ga0132258_12002454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1457	Open in IMG/M
3300015374\|Ga0132255_105696199	Not Available	527	Open in IMG/M
3300017792\|Ga0163161_11035755	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	702	Open in IMG/M
3300017974\|Ga0187777_10515143	Not Available	837	Open in IMG/M
3300017999\|Ga0187767_10101234	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300018469\|Ga0190270_12074066	Not Available	628	Open in IMG/M
3300018476\|Ga0190274_11159355	Not Available	855	Open in IMG/M
3300018476\|Ga0190274_12483046	Not Available	615	Open in IMG/M
(restricted) 3300021517\|Ga0224723_1252062	Not Available	503	Open in IMG/M
(restricted) 3300021518\|Ga0224722_1118188	Not Available	880	Open in IMG/M
3300025315\|Ga0207697_10532909	Not Available	517	Open in IMG/M
3300025321\|Ga0207656_10335187	Not Available	753	Open in IMG/M
3300025893\|Ga0207682_10148175	Not Available	1057	Open in IMG/M
3300025901\|Ga0207688_10086664	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300025907\|Ga0207645_10405774	Not Available	917	Open in IMG/M
3300025920\|Ga0207649_10187230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1453	Open in IMG/M
3300025923\|Ga0207681_10575439	Not Available	929	Open in IMG/M
3300025925\|Ga0207650_10070274	Not Available	2631	Open in IMG/M
3300025931\|Ga0207644_10613400	Not Available	904	Open in IMG/M
3300025936\|Ga0207670_11553031	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300025940\|Ga0207691_10202800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1726	Open in IMG/M
3300025945\|Ga0207679_10098532	All Organisms → cellular organisms → Bacteria → Proteobacteria	2280	Open in IMG/M
3300025961\|Ga0207712_11827863	Not Available	544	Open in IMG/M
3300025972\|Ga0207668_10060809	All Organisms → cellular organisms → Bacteria → Proteobacteria	2653	Open in IMG/M
3300025986\|Ga0207658_10830915	Not Available	839	Open in IMG/M
3300026035\|Ga0207703_11790695	Not Available	590	Open in IMG/M
3300026067\|Ga0207678_10013555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7158	Open in IMG/M
3300026088\|Ga0207641_10080700	All Organisms → cellular organisms → Bacteria → Proteobacteria	2823	Open in IMG/M
3300026088\|Ga0207641_10218351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1767	Open in IMG/M
3300026088\|Ga0207641_10337461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1433	Open in IMG/M
3300026088\|Ga0207641_10596642	Not Available	1081	Open in IMG/M
3300026088\|Ga0207641_11643941	Not Available	644	Open in IMG/M
3300026095\|Ga0207676_10373086	Not Available	1326	Open in IMG/M
3300026116\|Ga0207674_11070310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	776	Open in IMG/M
3300026142\|Ga0207698_10456597	Not Available	1234	Open in IMG/M
3300026142\|Ga0207698_12178688	Not Available	567	Open in IMG/M
3300027775\|Ga0209177_10097920	All Organisms → cellular organisms → Bacteria → Proteobacteria	925	Open in IMG/M
3300028380\|Ga0268265_10143099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2005	Open in IMG/M
3300028380\|Ga0268265_12089885	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	573	Open in IMG/M
3300028381\|Ga0268264_10205732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1803	Open in IMG/M
3300031858\|Ga0310892_11378158	Not Available	506	Open in IMG/M
3300031938\|Ga0308175_100683360	Not Available	1113	Open in IMG/M
3300031939\|Ga0308174_10121606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1905	Open in IMG/M
3300031939\|Ga0308174_10516781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	979	Open in IMG/M
3300031996\|Ga0308176_10510485	Not Available	1222	Open in IMG/M
3300031996\|Ga0308176_10746037	Not Available	1019	Open in IMG/M
3300032003\|Ga0310897_10632426	Not Available	531	Open in IMG/M
3300032074\|Ga0308173_10189363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1699	Open in IMG/M
3300032074\|Ga0308173_11170003	Not Available	718	Open in IMG/M
3300032782\|Ga0335082_10020514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7130	Open in IMG/M
3300032829\|Ga0335070_10552947	Not Available	1087	Open in IMG/M
3300032893\|Ga0335069_10441266	Not Available	1520	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	71.03%
Environmental	Environmental	28.04%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	71.03%
Terrestrial	Environmental → Terrestrial	26.17%
Aquatic	Environmental → Aquatic	1.87%
Wastewater	Engineered → Wastewater	0.93%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	34.58%
Soil	Environmental → Terrestrial → Soil	26.17%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Roots	Host-Associated → Plants → Roots	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.93%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	30.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	25.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.28%
Loam	Environmental → Terrestrial → Soil → Loam	7.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Lake	Environmental → Aquatic → Freshwater → Lake	1.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	30.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	25.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.28%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.41%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	17.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.41%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021517 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR2_MetaG	Environmental	Open in IMG/M
3300021518 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR1_MetaG	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_127878501	3300000550	Soil	MYYEPDTVWGRTVEGDEEVSIPKSGLSLVQRRVLRELAQPXXXXXXXXKHKIEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIQLSTANAEAANGQTCRRPPLSICLLAAALGVCSVLLILT*
F14TC_1089211541	3300000559	Soil	MYYEPDTVWGRTVEGDEEVSVPKSGLSLVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLSAANAEPANGQTWRRPPLSICLLAAALGVCSV
Ga0070676_103828002	3300005328	Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0070670_1000922633	3300005331	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHTLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPAYFLAAAVGISTVLILIW*
Ga0070670_1002328592	3300005331	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT*
Ga0070677_106360701	3300005333	Miscanthus Rhizosphere	PDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0068868_1012579512	3300005338	Miscanthus Rhizosphere	PDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT*
Ga0070689_1001363273	3300005340	Switchgrass Rhizosphere	GRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT*
Ga0070689_1007813982	3300005340	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVATPRSGLSLVQRRVLRELGRPRTFATLAAKHQLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLASDQTAQAWKPSLPV
Ga0070687_1003832982	3300005343	Switchgrass Rhizosphere	KSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0070661_1007372291	3300005344	Corn Rhizosphere	MYYEPDTVWGRTIQGDEEVCIPRSGLSLVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPSPRTAPRIHLSDPDATAANAEAWQRPPLPVCLLAVFLGLCSVLLILT*
Ga0070668_1002990042	3300005347	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0070668_1005082532	3300005347	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPKSGLSLVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPSPRTAPRIHLSDPDATAANAEAWQRPPLPVCLLAVFLGLCSVLLILT*
Ga0070669_1006532882	3300005353	Switchgrass Rhizosphere	PDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHSLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPVYFLAAAVGISTVLILIW*
Ga0070675_1005736751	3300005354	Miscanthus Rhizosphere	SGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0070671_1011137482	3300005355	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPRLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANTATADAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0070667_1010688711	3300005367	Switchgrass Rhizosphere	MTGLNDFRMTGMYYEPDTVWGRTIEGDEEVEKPRSGLSLVQRRVLRELGQPRTFAAIAARQHIAAPKLEHELIRLADRRLVAFQRPGAKQPRTAPRIHLAAQAGTAAALPPVWRPAAPVYLLA
Ga0070667_1011926681	3300005367	Switchgrass Rhizosphere	YEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0070663_1000589443	3300005455	Corn Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0070678_1001870772	3300005456	Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPRLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGAETWRRPPLSICLLAAALGVCSVLLILT*
Ga0070662_1008955202	3300005457	Corn Rhizosphere	DTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0068867_1006325371	3300005459	Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPSPRTAPRIHLSDPDAAAANAATWQRPPLPVCLMAVLLGLCTVLLILT*
Ga0068853_1002472992	3300005539	Corn Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPRLENELIWLAERKLVAFQRPGSPGPRTAPRIHLPAANAATVGAESWRRPPL
Ga0070672_1006236922	3300005543	Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPRLENELIWLAERKLVAFQRPGAPGPRTAPRIHLAAANAATAGAETWRRPPLSICLLAAALGVCSVLLILT*
Ga0070693_1003804322	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKIEAPKLESELIWLAERKLVAFQRPGSPGPRTAPRIHLHAENDVHGGAESWRRPPLMVCLLAAALGVCSVLLILT*
Ga0070664_1005049782	3300005564	Corn Rhizosphere	MYYEPDTVWGRTIQGDEEVCIPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLPAANAATVGAESWRRPPLIVCLLAAALGVCSVLLILT*
Ga0068857_1008679161	3300005577	Corn Rhizosphere	MYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHSLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPAYFLAAAVGISTVLILIW*
Ga0068852_1006028351	3300005616	Corn Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANTATADAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0068859_1014006741	3300005617	Switchgrass Rhizosphere	MTGMYYEPDTLWGRTIEGDEEVEKPRSGLSLVQRRVLRELGQPRTFAAIAARQHIAAPKLEHELIRLAERRLVAFQRPGSKQPRTAPRIHLAAQPGTAAALPATWRPPAPVYLLAIAFGIAVVLLIVA*
Ga0068859_1021710142	3300005617	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVATPRSGLSLVQRRVLRELGKPRTFATLVAKHHLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLACDDTAREWKPSLPVYFLAAAVGIAT
Ga0068861_1025621141	3300005719	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVATPRSGLSLVQRRVLRELGRPRTFATLAAKHQLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPAYFLAAAVGISTVLILIW*
Ga0066903_1023142452	3300005764	Tropical Forest Soil	MYYEPDTVWGRTIEGDEEVAKPRSGLSLVQRKVLGELARPRTFAALAVHYRLDMPKLEHELISLAERRLVAFQRPGSPQPRTAPRIHLSAQPGTAAALPPDPWKPPTAVYLGALGLGMAIVLILVA*
Ga0068851_102992731	3300005834	Corn Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPRLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGADTWRRPPLSICLLAAALGVCSVLLILT*
Ga0068870_106647551	3300005840	Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHNLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWRPALPVYFLAAAVGISTVLILIW*
Ga0068863_1000663555	3300005841	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVEKPRGGLSLVQRRVLRELGQPRTFAAIAARQHIAPPKLEHELIRLAERRLVAFQRPGSPQPRTAPRIHLAAQPGTAAALPRAAWQPPAPVYLLAIAFGIAMVLLIVG*
Ga0068863_1001583443	3300005841	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVATPRSGLSLVQRRVLRELGKPRTFATLVAKHHLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLACDDTAREWKPSLPVYFLAAAVGIATVLILIW*
Ga0068863_1005102611	3300005841	Switchgrass Rhizosphere	IEGDEEVEKPRSGLSLVQRRVLRELGQPRTFAAIAARQHIAAPKLEHELIRLAERRLVAFQRPGAKQPRTAPRIHLAAQAGTAAALPPFWRPPAPVYLLAIAFGMALVLLIVA*
Ga0068863_1024384382	3300005841	Switchgrass Rhizosphere	VWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHSLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPVYFLAAAVGISTVLILIW*
Ga0068860_1028218091	3300005843	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVATPRSGLSLVQRRVLRELGRPRTFATLAAKHQLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLASDQTAQAWKPSLPVYFLAAAVGISTVLILIW*
Ga0068862_1000296692	3300005844	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVEKPRGGLSLVQRRVLRELGQPRTFAAIAARQHIAPPKLEHELIRLAERRLVAFQRPGSPQPRTAPRIQLAAQPGTAAALPGAAWQPPAPVYLLAIAFGIAMVLLIVG*
Ga0075428_1022272032	3300006844	Populus Rhizosphere	TVEGDEEVSVPKSGLSLVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERRLVAFQRPGSPSPRTAPRIHLSDPDATAADAERWHRPPLPVCLLAVFLGLCSVLLILT*
Ga0075433_108295382	3300006852	Populus Rhizosphere	MYYEPDTVWGRTIEGDDEVAKPKSGLSLVQRRVLRDLARPRTFAAIAAQHQMAMPKLEHELISLAERRLVAFQRPGSPKPRTAPRFDLASHGGAATALPHEPWRPPPAAMYLGALALGMAIVMILV
Ga0075425_1022487462	3300006854	Populus Rhizosphere	MYYEPDTVWGRTIEGDDEVAKPKSGLSLVQRRVLRDLARPRTFAAIAAQHQMAMPKLEHELISLAERRLVAFQRPGSPKPRTAPRFDLASHGGAATALPHEPWRPPPAAMYLGALALGMAIVMILVV*
Ga0079219_102960512	3300006954	Agricultural Soil	MYYEPDTLWGRTVEGDEEVTQPRHGLSLVQRKVLRELGQPRTFAAIAAHHQIAPPKLEHELIRLADRRLVAFQRPGAAQPRTAPRIHLSAQPGTAAALPPGPWKPPAAVYVGAIAFGMAIVVLLVS*
Ga0111539_124126612	3300009094	Populus Rhizosphere	GKTNMYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHNLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQHWKPALPVYFLAAAVGISTVLILIW*
Ga0111538_103830533	3300009156	Populus Rhizosphere	MYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHSLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRIKLPLAPDPTAQQWKPALPAYFLAAAVGISTVL
Ga0111538_117809672	3300009156	Populus Rhizosphere	MTNMYYEPDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT*
Ga0131092_106606982	3300009870	Activated Sludge	MYYEPDTVWGRTIEGDEEVAVPRSGLSLVQRRVLRELAQPRTFASIAAKHKLEAPKLENELIWLAERRLVAYQRPGTPGPRTQPGIHLPAVGADAAPAEAWRRPPLTICLLAAALGVCSVLLVLT*
Ga0163163_121765591	3300014325	Switchgrass Rhizosphere	PDTVWGRTIEGDEEVEKPRGGLSLVQRRVLRELGQPRTFAAIAARQHIAPPKLEHELIRLAERRLVAFQRPGSPQPRTAPRIHLAAQPGTAAALPRAAWQPPAPVYLLAIAFGIAMVLLIVG*
Ga0157380_103155662	3300014326	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGADTWRRPPLSICLLAAALGVCSVLLILT*
Ga0157380_117269201	3300014326	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDQEVTNSRSALSIVQRRVLRELGRPRTFASLAAKHYRVEPPKLEHELICLAERRLVAFQRPGTTQPRTAPRINLPASLEGVAMRKPWKPSPAVYLLAMAIGIGTVLLIFG*
Ga0157379_102906411	3300014968	Switchgrass Rhizosphere	MYYEPDTLWGRTIEGDEEVEKPRSGLSLVQRRVLRELGQPRTFAAIAARQHIAAPKLEHELIRLADRRLVAFQRPGAKQPRTAPRIHLAAQAGTAAALPPVWRPAAPVYLLAIAFGMALVLLIVA*
Ga0157376_113775051	3300014969	Miscanthus Rhizosphere	CTACDFRMIARRHRRHRARIINMYYEPDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT*
Ga0173480_104673482	3300015200	Soil	IPKSGLSLVQRRVLRELAQPRTFAAIAAKHKIEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT*
Ga0132258_119371381	3300015371	Arabidopsis Rhizosphere	MRVAAGAPHKDNVMYYEPDTVWGRTIEGDEEVSVPKSGLSLVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPGPRTAPRIHLSDPNAAAANAATWQRPPLPVCLLAVLLGLCSVLLILT*
Ga0132258_120024543	3300015371	Arabidopsis Rhizosphere	SGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANTATADAQTWRRPPLTICLLAAALGVCSVLLILT*
Ga0132255_1056961991	3300015374	Arabidopsis Rhizosphere	DRRHRTRINIMYYEPDTVWGRTLEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKQKMEAPKLENELIWLAERKLVAFQRPGAPGPRTAPRIHLPDTSAPAANADTWQRPPLPVCLLAVLLGLCSVLLILT*
Ga0163161_110357551	3300017792	Switchgrass Rhizosphere	EPDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPGPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVLLGLCSVLLILT
Ga0187777_105151432	3300017974	Tropical Peatland	MYYEPDTVWGRTIEGDEEEVAVPKSGLSLAQRWVLCELGQPRPFAVLTARYRMAAPKLEGELIRLAERRLVAFQRPGSPQPRTAPRIHLAASGAAAVVLPWAWKPPPMPVYYLLAVAMGVGSVLLILL
Ga0187767_101012341	3300017999	Tropical Peatland	MYYEPDTVWGRTLEGDQEVAVPKSGLSLVQRRVLRELGQPRPFAVLAARYRMAAPKLESELIRLAERRLVAFQRPGSPQPRTAPRIHLAASGAAAVVLPGTWRPPMPVYYLLAVAMGVGSVLLILL
Ga0190270_120740661	3300018469	Soil	MYYEPDTVWGRTIEGDEEVSIPRSGLSLVQRRVLRELAQPRTFASIAAKHKIEAPKLENELIWLAERKLVAFQRPGSPRPRTAPRIHLAAANADTAHAETWRRPPLTVCLLAAALGVCTVLLILT
Ga0190274_111593551	3300018476	Soil	TVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPGPRTAPRIHLPGAGAAAANAATWQRPPLPVCLLAVFLGLCSVLLILT
Ga0190274_124830462	3300018476	Soil	MYYEPDTVWGRTIEGDEEVATPRSGLSLVQRRVLRELGQPRTFATLVAKHRLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLTADGSATNAWKPSLPVYFLAAAVGISTVLILIW
(restricted) Ga0224723_12520621	3300021517	Freshwater Sediment	MYYEPDTVWGRTIEGDDEVAVPKSGLSLTQRRVLRDLAQPRTFASIAAKQRMDAPKLENELIWLAERKLVAYQRPGTDGPRTAPRIHQPAANAASVADEPWRRPPA
(restricted) Ga0224722_11181881	3300021518	Freshwater Sediment	MYYEPDTVWGRTIEGDDEVAVPKSGLSLTQRRVLRDLAQPRTFASIAAKQRMDAPKLENELIWLAERKLVAYQRPGTDGPRTAPRIHQPAANAASVADEPWRRPPLAVCLLAVALGIGSVLVILH
Ga0207697_105329091	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGAQTWRRPPL
Ga0207656_103351872	3300025321	Corn Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207682_101481752	3300025893	Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANTATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207688_100866641	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207645_104057742	3300025907	Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207649_101872302	3300025920	Corn Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207681_105754392	3300025923	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT
Ga0207650_100702742	3300025925	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHTLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPAYFLAAAVGISTVLILIW
Ga0207644_106134002	3300025931	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPRLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANTATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207670_115530311	3300025936	Switchgrass Rhizosphere	VWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT
Ga0207691_102028002	3300025940	Miscanthus Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207679_100985323	3300025945	Corn Rhizosphere	MYYEPDTVWGRTIQGDEEVCIPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANTATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207712_118278631	3300025961	Switchgrass Rhizosphere	CDFRMIARRDRRHRTRMTNMYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207668_100608092	3300025972	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHNLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPAYFLAAAVGISTVLILIW
Ga0207658_108309151	3300025986	Switchgrass Rhizosphere	MTGLNDFRMTGMYYEPDTVWGRTIEGDEEVEKPRSGLSLVQRRVLRELGQPRTFAAIAARQHIAAPKLEHELIRLADRRLVAFQRPGAKQPRTAPRIHLAAQAGTAAALPPVWRPAAPVYLLAIAF
Ga0207703_117906952	3300026035	Switchgrass Rhizosphere	MYYEPDTLWGRTIEGDEEVEKPRSGLSLVQRRVLRELGQPRTFAAIAARQHIAAPKLEHELIRLAERRLVAFQRPGSKQPRTAPRIHLAAQPGTAAALPRAAWQPPAPVYLLAIAFGIAMVLL
Ga0207678_100135552	3300026067	Corn Rhizosphere	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPRLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGADTWRRPPLSICLLAAALGVCSVLLILT
Ga0207641_100807004	3300026088	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVATPRSGLSLVQRRVLRELGKPRTFATLVAKHHLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLACDDTAREWKPSLPVYFLAAAVGIATVLILIW
Ga0207641_102183512	3300026088	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHSLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPVYFLAAAVGISTVLILIW
Ga0207641_103374612	3300026088	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVEKPRGGLSLVQRRVLRELGQPRTFAAIAARQHIAPPKLEHELIRLAERRLVAFQRPGSPQPRTAPRIHLAAQPGTAAALPRAAWQPPAPVYLLAIAFGIAMVLLIVG
Ga0207641_105966422	3300026088	Switchgrass Rhizosphere	LSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0207641_116439412	3300026088	Switchgrass Rhizosphere	RSGISLAFSITGINDFRMTGMYYEPDTLWGRTIEGDEEVEKPRSGLSLVQRRVLRELGQPRTFAAIAARQHIAAPKLEHELIRLAERRLVAFQRPGSKQPRTAPRIHLAAQPGTAAALPATWRPPAPVYLLAIAFGIAVVLLIVA
Ga0207676_103730862	3300026095	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVATPRSGLSLVQRRVLRELGRPRTFATLAAKHQLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPAYFLAAAVGISTVLILIW
Ga0207674_110703101	3300026116	Corn Rhizosphere	MYYEPDTVWGRTIEGDQEVSTPRSGLSLVQRKVLRELGQPRTFATLAAKHSLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLAPDPTAQQWKPALPAY
Ga0207698_104565972	3300026142	Corn Rhizosphere	MNHMYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKIEAPKLESELIWLAERKLVAFQRPGSPGPRTAPRIHLHAENDAHGGAESWRRPPLMVCLLAAALGVCSVLLILT
Ga0207698_121786882	3300026142	Corn Rhizosphere	YEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANTATADAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0209177_100979202	3300027775	Agricultural Soil	MYYEPDTLWGRTVEGDEEVTQPRHGLSLVQRKVLRELGQPRTFAAIAAHHQIAPPKLEHELIRLADRRLVAFQRPGAAQPRTAPRIHLSAQPGTAAALPPGPWKPPAAVYVGAIAFGMAIVVLLVS
Ga0268265_101430992	3300028380	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVEKPRGGLSLVQRRVLRELGQPRTFAAIAARQHIAPPKLEHELIRLAERRLVAFQRPGSPQPRTAPRIQLAAQPGTAAALPGAAWQPPAPVYLLAIAFGIAMVLLIVG
Ga0268265_120898852	3300028380	Switchgrass Rhizosphere	SGLSLVQRRVLRELGRPRTFATLAAKHQLDAPKLEHELISLAERRLVAFQRPGSPQPRTAPRINLPLASDQTAQAWKPSLPVYFLAAAVGISTVLILIW
Ga0268264_102057322	3300028381	Switchgrass Rhizosphere	MYYEPDTVWGRTIEGDEEVSIPKSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPRLENELIWLAERKLVAFQRPGSPGPRTAPRIHLAAANAATAGAQTWRRPPLTICLLAAALGVCSVLLILT
Ga0310892_113781581	3300031858	Soil	MYYEPDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVV
Ga0308175_1006833602	3300031938	Soil	MYYEPDTVWGRTIEGDEEVAKPRSGLSLVQRRVLRELGQPRTFAAIAAKQHIAAPKLEHELIRLAERRLVAFQRPGSPQPRTAPRIHLAAQPGTAAAMADEPWRPPPAAIYLL
Ga0308174_101216062	3300031939	Soil	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLPAANADTASAEPWRRPPLIVCLLAAALGVCSVLLILT
Ga0308174_105167812	3300031939	Soil	MYYEPDTVWGRTIEGDEEVAKPRSGLSLVQRRVLRELGQPRTFAAIAAKQHIAAPKLEHELIRLAERRLVAFQRPGSPQPRTAPRIHLAAQPGAAAAMADAPWRPPPAAIYLLAIAVGMAVVLLLTG
Ga0308176_105104852	3300031996	Soil	MYYEPDTVWGRTIEGDDEVAVPRSGLSLVQRRVLRELVQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLPDPGTMAANAPTWQRPPLHVCLLAVLLGLCSVLLILT
Ga0308176_107460372	3300031996	Soil	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAQKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLPAANADTASAEPWRRPPLVVCL
Ga0310897_106324262	3300032003	Soil	MTNMYYEPDTVWGRTIEGDEEVTVPRSGLSIVQRRVLRELAQPRTFAAIAAKHKMEAPKLENELIWLAERKLVAFQRPGAPAPRTAPRIHLSDPNATAANAATWQRPPLPVCLAAVVLGLCSVLLILT
Ga0308173_101893632	3300032074	Soil	MYYEPDTVWGRTIEGDEEVAKPRSGLSLVQRHVLRELGQPRTFAAIAAKQHIAAPKLEHELIRLAERRLVAFQRPGSPQPRTAPRIHLAAQPGAAAAMIDAPWRPPPAAIYLLAIAVGMAVVLLLTG
Ga0308173_111700031	3300032074	Soil	MYYEPDTVWGRTIEGDEEVSVPRSGLSLVQRRVLRELAQPRTFASIAAKHKMEAPKLENELIWLAERKLVAFQRPGSPGPRTAPRIHLPAANADTASAEPWRRPPLVVCLLAAALGVCSVLLILT
Ga0335082_100205145	3300032782	Soil	MYYEPDTVWGRTVEGDQEVTAPRSGLSLVQRRVLRELGQPRPFAVIAARYGMAAPKLESELIWLAERRLVAFQRPGSPQPRTAPRIHLSAPSGVAAVEAWRPPMPMYYLLAIAMGVGSVLLILL
Ga0335070_105529471	3300032829	Soil	MYYEPDTVWGRTIEGDQEVAVPKSGLSLVQRRVLRELGQPRPFAVIASRYRMGAPKLESELIFLAERRLVAFQRPGSPQPRTAPRIHLAAPDAAAVALPGAWRPPMPMYYLLAVAMGVGSVLLILL
Ga0335069_104412662	3300032893	Soil	MYYEPDTVWGRTVEGDQEVAVPKSGLSLVQRRVLRELGQPRPFAVIAARYRMGAPKLESELIFLAERRLVAFQRPGSPQPRTAPRIHLAAPDAAAVALPGAWRPPMPMYYLLAVAMGVGSVLLILL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters