Basic Information | |
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IMG/M Taxon OID | 3300021290 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131209 | Gp0238799 | Ga0213902 |
Sample Name | Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Cave_2 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 17071799 |
Sequencing Scaffolds | 41 |
Novel Protein Genes | 46 |
Associated Families | 45 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 14 |
All Organisms → cellular organisms → Bacteria | 9 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 11 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 2 |
Not Available | 4 |
Ecosystem Assignment (GOLD) | |
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Name | Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → land → soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 38.083 | Long. (o) | -81.98 | Alt. (m) | N/A | Depth (m) | .1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000382 | Metagenome / Metatranscriptome | 1210 | Y |
F001123 | Metagenome / Metatranscriptome | 770 | Y |
F001486 | Metagenome | 686 | Y |
F001750 | Metagenome / Metatranscriptome | 642 | Y |
F002064 | Metagenome | 597 | Y |
F002279 | Metagenome | 575 | Y |
F002548 | Metagenome / Metatranscriptome | 549 | Y |
F003258 | Metagenome | 497 | Y |
F003588 | Metagenome / Metatranscriptome | 478 | Y |
F003710 | Metagenome / Metatranscriptome | 473 | Y |
F004159 | Metagenome / Metatranscriptome | 450 | Y |
F006090 | Metagenome | 382 | Y |
F006775 | Metagenome | 365 | Y |
F007195 | Metagenome | 356 | Y |
F009860 | Metagenome / Metatranscriptome | 312 | Y |
F010125 | Metagenome | 308 | Y |
F010196 | Metagenome / Metatranscriptome | 307 | Y |
F010716 | Metagenome | 300 | Y |
F013018 | Metagenome | 275 | Y |
F021852 | Metagenome / Metatranscriptome | 217 | Y |
F026373 | Metagenome / Metatranscriptome | 198 | Y |
F027283 | Metagenome / Metatranscriptome | 195 | Y |
F034879 | Metagenome | 173 | Y |
F037364 | Metagenome | 168 | Y |
F040840 | Metagenome / Metatranscriptome | 161 | Y |
F043603 | Metagenome | 156 | Y |
F047898 | Metagenome | 149 | Y |
F049210 | Metagenome | 147 | Y |
F057405 | Metagenome | 136 | Y |
F058376 | Metagenome | 135 | Y |
F058428 | Metagenome | 135 | N |
F059302 | Metagenome | 134 | Y |
F060315 | Metagenome | 133 | Y |
F060323 | Metagenome | 133 | Y |
F072730 | Metagenome | 121 | Y |
F073080 | Metagenome / Metatranscriptome | 120 | Y |
F075305 | Metagenome / Metatranscriptome | 119 | Y |
F084700 | Metagenome / Metatranscriptome | 112 | Y |
F089143 | Metagenome | 109 | Y |
F094298 | Metagenome | 106 | Y |
F094371 | Metagenome | 106 | Y |
F095976 | Metagenome | 105 | Y |
F097545 | Metagenome / Metatranscriptome | 104 | N |
F101779 | Metagenome | 102 | Y |
F105394 | Metagenome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0213902_100097 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2162 | Open in IMG/M |
Ga0213902_100162 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1902 | Open in IMG/M |
Ga0213902_100190 | All Organisms → cellular organisms → Bacteria | 1846 | Open in IMG/M |
Ga0213902_100308 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1613 | Open in IMG/M |
Ga0213902_100430 | All Organisms → cellular organisms → Bacteria | 1485 | Open in IMG/M |
Ga0213902_100445 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1468 | Open in IMG/M |
Ga0213902_100827 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1233 | Open in IMG/M |
Ga0213902_100860 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1221 | Open in IMG/M |
Ga0213902_100898 | All Organisms → cellular organisms → Bacteria | 1206 | Open in IMG/M |
Ga0213902_100989 | All Organisms → cellular organisms → Bacteria | 1168 | Open in IMG/M |
Ga0213902_101009 | All Organisms → cellular organisms → Bacteria | 1162 | Open in IMG/M |
Ga0213902_101091 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1130 | Open in IMG/M |
Ga0213902_101269 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1072 | Open in IMG/M |
Ga0213902_101334 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1054 | Open in IMG/M |
Ga0213902_101465 | All Organisms → cellular organisms → Bacteria | 1016 | Open in IMG/M |
Ga0213902_101476 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1014 | Open in IMG/M |
Ga0213902_101871 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 923 | Open in IMG/M |
Ga0213902_102603 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 813 | Open in IMG/M |
Ga0213902_102677 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 802 | Open in IMG/M |
Ga0213902_102868 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 778 | Open in IMG/M |
Ga0213902_103060 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 758 | Open in IMG/M |
Ga0213902_103137 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 749 | Open in IMG/M |
Ga0213902_103481 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 716 | Open in IMG/M |
Ga0213902_103669 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 701 | Open in IMG/M |
Ga0213902_104126 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 665 | Open in IMG/M |
Ga0213902_104360 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 651 | Open in IMG/M |
Ga0213902_104942 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 616 | Open in IMG/M |
Ga0213902_105115 | All Organisms → cellular organisms → Bacteria | 606 | Open in IMG/M |
Ga0213902_105517 | All Organisms → cellular organisms → Bacteria | 584 | Open in IMG/M |
Ga0213902_105725 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 575 | Open in IMG/M |
Ga0213902_105838 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 570 | Open in IMG/M |
Ga0213902_106165 | All Organisms → cellular organisms → Bacteria | 557 | Open in IMG/M |
Ga0213902_106195 | Not Available | 556 | Open in IMG/M |
Ga0213902_106323 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 551 | Open in IMG/M |
Ga0213902_106446 | Not Available | 546 | Open in IMG/M |
Ga0213902_106456 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 546 | Open in IMG/M |
Ga0213902_106519 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 543 | Open in IMG/M |
Ga0213902_106832 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 532 | Open in IMG/M |
Ga0213902_107383 | Not Available | 513 | Open in IMG/M |
Ga0213902_107527 | Not Available | 508 | Open in IMG/M |
Ga0213902_107583 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 507 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0213902_100097 | Ga0213902_1000971 | F094298 | MTDESVTVKGSPVRSLQKFIDANLTNDQRTMVFSNLPPEYSTRFRAPILATETVPVHMLNRFTEEAAKATGESVEAFARRAGQEGASDAVKGIYRFFALVLTPPALLS |
Ga0213902_100162 | Ga0213902_1001623 | F002064 | MTATEAPTLTLNDQQLGLLFQYTVEAYKTFEKLAENLPNPMTATMFKQFAVDERTNRDLLDMKIAGNSASRVRVTLGGDLIFQDILEGELSFRESAEFLIARERTMHKRLRELIAGAPVADRNLLIYLETVKRAHNVELERELELIKGDSDWWKREDAETRIVHGPQ |
Ga0213902_100190 | Ga0213902_1001902 | F060323 | VEFYAALVLALALAAIAGVLYFYVMFLEGRSRQMKGHIADLERSNEGLRRELEETRALLDRELEHSRTLWPELLDDAGDVSRN |
Ga0213902_100308 | Ga0213902_1003081 | F095976 | EAVFVSCANMDHLEQGYDLLQLLSANFPDLAIVAGGSAFSRDRSKTLAAGATYVPSTLKEAKEDFLQRRKGVRRSKSGRSMTMAGTRFRVPPPG |
Ga0213902_100430 | Ga0213902_1004302 | F001750 | MPKLTADIPNELARQIDRIIRDGWFPDQESVMREALSQFVDAKSFLGDSPRMLHRFAADALNDSKPDVALKFVDRGLSLLSNHKLSDFALYQSLIELRVQILIIAGRHDDALSVLEEAREKMPNNPSIAKWIEKLNKGRGQ |
Ga0213902_100445 | Ga0213902_1004452 | F006775 | MQLPKDSCACGHAIDHHDGGRGGPCNYCACAAGEPPTAFQVGVIHALHEVTITLVKLVKEIQAQRGV |
Ga0213902_100827 | Ga0213902_1008272 | F006090 | MSLLKLRNGSSAPVPRLEGKEVLVGPDPTVAMVKGVMFGARKQFLIDTVGEEGLSEILQKLTPQTRQYVKTPLASSWCEFESLVELDRTIYESLKATHPNVLALIGAASAELGIGRAYKSLDSEELVKFLENNALFHNQYQKFGTVKFEKTPNGGRMIYSRYPCFSPVYCASAVGFFLESILRHGGTEPNVVETKCQCHGDQSC |
Ga0213902_100860 | Ga0213902_1008603 | F002548 | MPKFAIDPSTESHGASFYERRRTRRIRIIVELTLNLIGSDRTVSHREALCLIDCARKAILELYPGFEEGFARIVQPHFERVLVQ |
Ga0213902_100898 | Ga0213902_1008982 | F072730 | MSATVGRLLQLIAMIVLPIGLMYGLARGEIQTEVRLLAIGGFLFVAGWLMARERE |
Ga0213902_100989 | Ga0213902_1009892 | F010716 | MAEDVVEKLQIERSILLARDGVSDHIDELDRRLRTTLDVKSKASEYAPQLIAGGAVVGLLVGFGVPKIFRRLIAIGVPIALIAATVKKMTDRDQ |
Ga0213902_101009 | Ga0213902_1010092 | F059302 | AYMSATPHDRHEPDPPKGVTFRDIDPETGMLWADGCPGPFREVFLNGTAPTHHCPSGIFGKIVRRVFFDDEHFDEPPAITFEKFRRWANDVDRNRQQVERGLDRLKRIFQ |
Ga0213902_101091 | Ga0213902_1010913 | F004159 | MQTPSDHERAAAGLDYDSDPIRERAAALGSTIAENGPEALFDEIENLLPESWRDQIKTFPLAAVALGVGIGVWLGMKKSDEIITAGSSMISAAAMANVSSVFNKDKE |
Ga0213902_101269 | Ga0213902_1012692 | F057405 | VLRRIKRTAVGAYLVFAAFSLISGGFRDFLGLTCSSAVTIISFLWLEEIVEILLQPAPHLHAKRLTLRTLARFLLLGVALAVTIIVARFNPVSVLLGFSIIVVGIFGEALYSVYRSFAG |
Ga0213902_101334 | Ga0213902_1013341 | F105394 | KHNPQDAKAFHYLALTAARIPGQTRQAVQAIETAIQREPMNATFLKDGGLLCKRAGLVAKAERYLEEAAKWDATNAEVQVALAELRQGRVESKETGKGFSLFRKN |
Ga0213902_101465 | Ga0213902_1014652 | F060315 | MGENLGLGTMTGEHEKPEFDSTNTKIHGEPPPGSPMPGVEREEGTEVKEEVNPNTE |
Ga0213902_101476 | Ga0213902_1014761 | F002279 | MPEWARLVGDSLKQHGPWHTYAKLSEARGAYPNDLSLRGYVEIVRNLIVHAFLEHPRGMQAVPRLSAEFLSNFDRFNLNAQEGYLVSLIDGRLDIQKLQILSPFDPFTTLFILAKLEHENAITVPK |
Ga0213902_101871 | Ga0213902_1018711 | F047898 | MNLVGTWNLEVATPFGKHPATLVFEGTGGALTAHISSRLGDAPLESLTVTHDGFDARVTMEFQGKPYNASIKGQVENNDALNGTIKVSLPIAPPIRYTGTRAG |
Ga0213902_102603 | Ga0213902_1026032 | F003258 | MRSLTPGQWYLRFTCEQCEAKQILFADLSRGEARIRATYVVECSICLHKGAYDGDDIERYQHPLEQEA |
Ga0213902_102677 | Ga0213902_1026771 | F034879 | MEESVAVSALLLNILFGLIPTFILGASIAAGVDDDRYHRKMFLLVYGLWAITLSMWNWMRSYPVAWIAVWAVFGVVALIASRALSR |
Ga0213902_102868 | Ga0213902_1028681 | F027283 | ILTVAPTRDQKVVKRWTLKGEPHGVAIGRDGIVYVGLAGPQSVLAIDSKTGTIAKEIVLDSAEIASTKELVTLRTNADRSRLYIANGSDESASILSLPDLAVLREITIEGEAIRDALPDPNGRYLYLLGRRVHVYDAKGETELRTIDIDDPMAIATTSNGATLAVLGTEDFGNTRATVVALYDTNGFAELARDPLQTDRRVEAALFAAGDRALIALGREYMYEKPLVSRAAKTMSSSSNGTMRMKIDFGDLVNSDRICL |
Ga0213902_103060 | Ga0213902_1030602 | F101779 | VITFRKEETMNQETRADLYVVECVWCGAKIREDNEQDGDAVCLKCFYQMLSNHLQSQKRAAYGDFVSDR |
Ga0213902_103137 | Ga0213902_1031372 | F043603 | MNNFAQTRTSKLESALSVSYLLPTMLAVNTCALLALEQLGGIPDWVKTAAAIFLSF |
Ga0213902_103378 | Ga0213902_1033782 | F058376 | LYNLPPMPTEVETLRELARAYWSGKNVTCPKHPGVAMAGSFVQTTFADHIFLTCPRDKATITIPQRPKQMEFYDQQVE |
Ga0213902_103481 | Ga0213902_1034812 | F040840 | LSAKAENLIPVQLSRVNETEGNQSEGAEHPRKTFVEPEVSFPVDVLESTTFFQFTESGAT |
Ga0213902_103481 | Ga0213902_1034813 | F040840 | LNTKSENLIPVQLSRVEEEDAARPSERAAGKKKFVEPTISFPIDVLEATTFFQVTDSGNVNMNP |
Ga0213902_103669 | Ga0213902_1036691 | F000382 | MGDADAALTWNTLPSATRELLAGKLTGLWNAPSDAAAFDSWPLDKKQALLLLVDRLYAKDLWKLVKRVTNVYGEGGVGLEFEAWPMIESTLSRRRDFTRRFANHNDTHGGFYEKDRGTAILHFLFQEGEPRRWYVHFDLYSPVHSPGSALKHFR |
Ga0213902_104126 | Ga0213902_1041261 | F003588 | SMLIEGNTEDGVEPTTDEEKQKLEEQPLRVRYEDRLLSVKAKQQPLPLILLKIGEELGIPVDIQNERLDPIDVNISKLPIEDVARQLSPHIKLYYRADLTRAEKRALRMVLAEPPKAVQG |
Ga0213902_104126 | Ga0213902_1041262 | F001123 | MQNEIINEENSVKNANGADELKKAFVEPSISVPVDVLEATTFFQVASSGATN |
Ga0213902_104360 | Ga0213902_1043601 | F013018 | LLDGDDARGDGSYERPYKSWREALRHVGSGDTVIAKNGDYRKAGPEARWGGLHLALTMSDKLEPGDPRRPVPDKTRPETVGVYRYDPARPLTIRAETRHGVIIDSVRLHLVRGVVIDGFDINPNPYYTDASGKKLNRRRNGVHGDSVYEPDDRFNKVKTNDPPGGHTAAWYDRALWTSYVTVRNCKVHYECPPGGCTPSYDPLQDDDRLYLVKFNQ |
Ga0213902_104942 | Ga0213902_1049421 | F001486 | DPCSFARFESYSMTARDNLVVSTRPGERPVEPVSIWAAKDATVVNNTFVGVGERGVLLVRPGNEVDSPARGCGRSVRLTLTEGLTLRGNVFVLSGVVDETMLYQTAGEGVRVTGFAHDHNTFFNGGRDVPTGGLRDPNRESGFSKADPLLPGGSGTDYASWMATARLAKGSPSEGRGTRAVTRK |
Ga0213902_105115 | Ga0213902_1051152 | F010196 | VPVSGIRLVIGTFVMGIAVPIILFFLLGLHSWTELFTLAATTFLAWGVADLFASILEKPRLRNRSPGQALREDWERRAKE |
Ga0213902_105517 | Ga0213902_1055172 | F073080 | MTLVIKSLTMNERQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRTEEEATEVVEHLWRLEREQAAS |
Ga0213902_105725 | Ga0213902_1057251 | F089143 | ELVLTDTNLKIKHTLTMTEGEKGAGPLSRPTPRVDAEDDEP |
Ga0213902_105838 | Ga0213902_1058381 | F084700 | VKLQEFDVMTAVQLPISERVLDRLADILFATDEILDMLDRDEGYPIDTTVDVGKSVRNVYDQVNELMKKLAD |
Ga0213902_106165 | Ga0213902_1061652 | F026373 | MLVNRSFDEIRVYEDVAERTGVQFARSDVRRSAACCSSLTQLHRKARASGDGSYYLPTGAWPAHITQLELKKPWLVISSLPP |
Ga0213902_106195 | Ga0213902_1061951 | F094371 | MRKTLALLLAAGFLYLVPSHPVSVKSQALAATSKFQTVANPIPNRYIVVLATTDLSPIATPAPTPVQAAPKGGAQASN |
Ga0213902_106323 | Ga0213902_1063231 | F049210 | HEHGGRTLEGRLTLMELLRRMRKGGYLSAHGIEAADQFEMFEKLIDEVAGSGSLKLYYIVDRREFIDKVKSVYAAYA |
Ga0213902_106433 | Ga0213902_1064332 | F003710 | RVLQEFRRLNAETLGIATIKAIKHPAGGGEAPAIDLVSKGFLTADATRENFALTQKGKDFLAIDAKPMNEESAAGEADEVAV |
Ga0213902_106446 | Ga0213902_1064461 | F075305 | VISQTLKDKPDDRLRAQLRTALTQLILAGLKPPEIKSLINEELDELLKESRR |
Ga0213902_106456 | Ga0213902_1064562 | F021852 | MTDFEDRVRRMAREAIREIGRDPGEIADVTEPPGADFCVIAFADPDVKPIEIPKPLGAGESQELDEIRRALQYRFGS |
Ga0213902_106519 | Ga0213902_1065191 | F007195 | SAVRHAPKRAMVTLAKPAVDVYRRGETLSAVVRAAGQLEGLRMRLNISDDLGRLLAVLEAPARGERTFTYKLDDFVGKQAFLAAELSDGRGAVVDQLRAKPVLVVPDKRREREYTALVAFGGTKHYLQDAQMRQVRAAAADTGFTWSGGDVDNSLNVPRGTFGVYWYDRGPTTPEAMEKA |
Ga0213902_106832 | Ga0213902_1068322 | F009860 | PVEGMANGKQIELLSRAIVNRLEDRGLVEFGDAEAGIQVVARILEENFTAVDAIEQEARQRFGRREPSDDELMEEMRRVAAERNFIL |
Ga0213902_106838 | Ga0213902_1068382 | F037364 | WTQQGRMMNGQGVIMTPAVPVAKGDLLALGNPHDQLVAIGEVVNVLREGGPVEVKPKVVLAG |
Ga0213902_107383 | Ga0213902_1073831 | F097545 | DGTTTLTDAQALTVTLTDVTLWVGPGGSLDNGGTALDVTDGATFSDDTVEAGTLGFSGHVGSLKLASLKDLGAAAGPGDDVSYLALDLSGVNASLVGLEDVLVFNAWDIGVLVNSVSDGDADATNDPDKLDWSAFTVSAGIGLPDFDDALNADIDLSITGAAALNVLDGL |
Ga0213902_107527 | Ga0213902_1075271 | F058428 | QEILALIKAGYLDKQIVKQLSCHHRTVARLRLQVSEPRLCDCGQLFYHTKKCQKRPGWQTLVRERRTAFDDLLVRINRRVPSTLPEEMRADICQEMLLQMMKSIDNVLTKVPEFIREYKKDYPFQYHSFDANPKLLERIAG |
Ga0213902_107583 | Ga0213902_1075831 | F010125 | RSQAKPYKPEAWRDDDATSDDLLSFHTPLADPTAREQCRLLDLLGRINYKILSGNRVYVEVDGIVYKTLYGGYWRSVFTGMEHFLLRCEQVSDNAWRKDDNTSVDLPIRYSNDGWTARGHSLSFILNRDLVSH |
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