NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021290

3300021290: Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Cave_2



Overview

Basic Information
IMG/M Taxon OID3300021290 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0131209 | Gp0238799 | Ga0213902
Sample NameSwitchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Cave_2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size17071799
Sequencing Scaffolds41
Novel Protein Genes46
Associated Families45

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium14
All Organisms → cellular organisms → Bacteria9
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria11
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium2
Not Available4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSwitchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomelandsoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: West Virginia
CoordinatesLat. (o)38.083Long. (o)-81.98Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000382Metagenome / Metatranscriptome1210Y
F001123Metagenome / Metatranscriptome770Y
F001486Metagenome686Y
F001750Metagenome / Metatranscriptome642Y
F002064Metagenome597Y
F002279Metagenome575Y
F002548Metagenome / Metatranscriptome549Y
F003258Metagenome497Y
F003588Metagenome / Metatranscriptome478Y
F003710Metagenome / Metatranscriptome473Y
F004159Metagenome / Metatranscriptome450Y
F006090Metagenome382Y
F006775Metagenome365Y
F007195Metagenome356Y
F009860Metagenome / Metatranscriptome312Y
F010125Metagenome308Y
F010196Metagenome / Metatranscriptome307Y
F010716Metagenome300Y
F013018Metagenome275Y
F021852Metagenome / Metatranscriptome217Y
F026373Metagenome / Metatranscriptome198Y
F027283Metagenome / Metatranscriptome195Y
F034879Metagenome173Y
F037364Metagenome168Y
F040840Metagenome / Metatranscriptome161Y
F043603Metagenome156Y
F047898Metagenome149Y
F049210Metagenome147Y
F057405Metagenome136Y
F058376Metagenome135Y
F058428Metagenome135N
F059302Metagenome134Y
F060315Metagenome133Y
F060323Metagenome133Y
F072730Metagenome121Y
F073080Metagenome / Metatranscriptome120Y
F075305Metagenome / Metatranscriptome119Y
F084700Metagenome / Metatranscriptome112Y
F089143Metagenome109Y
F094298Metagenome106Y
F094371Metagenome106Y
F095976Metagenome105Y
F097545Metagenome / Metatranscriptome104N
F101779Metagenome102Y
F105394Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0213902_100097All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2162Open in IMG/M
Ga0213902_100162All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1902Open in IMG/M
Ga0213902_100190All Organisms → cellular organisms → Bacteria1846Open in IMG/M
Ga0213902_100308All Organisms → cellular organisms → Bacteria → Proteobacteria1613Open in IMG/M
Ga0213902_100430All Organisms → cellular organisms → Bacteria1485Open in IMG/M
Ga0213902_100445All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1468Open in IMG/M
Ga0213902_100827All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1233Open in IMG/M
Ga0213902_100860All Organisms → cellular organisms → Bacteria → Acidobacteria1221Open in IMG/M
Ga0213902_100898All Organisms → cellular organisms → Bacteria1206Open in IMG/M
Ga0213902_100989All Organisms → cellular organisms → Bacteria1168Open in IMG/M
Ga0213902_101009All Organisms → cellular organisms → Bacteria1162Open in IMG/M
Ga0213902_101091All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1130Open in IMG/M
Ga0213902_101269All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1072Open in IMG/M
Ga0213902_101334All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1054Open in IMG/M
Ga0213902_101465All Organisms → cellular organisms → Bacteria1016Open in IMG/M
Ga0213902_101476All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1014Open in IMG/M
Ga0213902_101871All Organisms → cellular organisms → Bacteria → Acidobacteria923Open in IMG/M
Ga0213902_102603All Organisms → cellular organisms → Bacteria → Acidobacteria813Open in IMG/M
Ga0213902_102677All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium802Open in IMG/M
Ga0213902_102868All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium778Open in IMG/M
Ga0213902_103060All Organisms → cellular organisms → Bacteria → Acidobacteria758Open in IMG/M
Ga0213902_103137All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium749Open in IMG/M
Ga0213902_103481All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium716Open in IMG/M
Ga0213902_103669All Organisms → cellular organisms → Bacteria → Acidobacteria701Open in IMG/M
Ga0213902_104126All Organisms → cellular organisms → Bacteria → Acidobacteria665Open in IMG/M
Ga0213902_104360All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium651Open in IMG/M
Ga0213902_104942All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium616Open in IMG/M
Ga0213902_105115All Organisms → cellular organisms → Bacteria606Open in IMG/M
Ga0213902_105517All Organisms → cellular organisms → Bacteria584Open in IMG/M
Ga0213902_105725All Organisms → cellular organisms → Bacteria → Acidobacteria575Open in IMG/M
Ga0213902_105838All Organisms → cellular organisms → Bacteria → Acidobacteria570Open in IMG/M
Ga0213902_106165All Organisms → cellular organisms → Bacteria557Open in IMG/M
Ga0213902_106195Not Available556Open in IMG/M
Ga0213902_106323All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
Ga0213902_106446Not Available546Open in IMG/M
Ga0213902_106456All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium546Open in IMG/M
Ga0213902_106519All Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
Ga0213902_106832All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium532Open in IMG/M
Ga0213902_107383Not Available513Open in IMG/M
Ga0213902_107527Not Available508Open in IMG/M
Ga0213902_107583All Organisms → cellular organisms → Bacteria → Acidobacteria507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0213902_100097Ga0213902_1000971F094298MTDESVTVKGSPVRSLQKFIDANLTNDQRTMVFSNLPPEYSTRFRAPILATETVPVHMLNRFTEEAAKATGESVEAFARRAGQEGASDAVKGIYRFFALVLTPPALLS
Ga0213902_100162Ga0213902_1001623F002064MTATEAPTLTLNDQQLGLLFQYTVEAYKTFEKLAENLPNPMTATMFKQFAVDERTNRDLLDMKIAGNSASRVRVTLGGDLIFQDILEGELSFRESAEFLIARERTMHKRLRELIAGAPVADRNLLIYLETVKRAHNVELERELELIKGDSDWWKREDAETRIVHGPQ
Ga0213902_100190Ga0213902_1001902F060323VEFYAALVLALALAAIAGVLYFYVMFLEGRSRQMKGHIADLERSNEGLRRELEETRALLDRELEHSRTLWPELLDDAGDVSRN
Ga0213902_100308Ga0213902_1003081F095976EAVFVSCANMDHLEQGYDLLQLLSANFPDLAIVAGGSAFSRDRSKTLAAGATYVPSTLKEAKEDFLQRRKGVRRSKSGRSMTMAGTRFRVPPPG
Ga0213902_100430Ga0213902_1004302F001750MPKLTADIPNELARQIDRIIRDGWFPDQESVMREALSQFVDAKSFLGDSPRMLHRFAADALNDSKPDVALKFVDRGLSLLSNHKLSDFALYQSLIELRVQILIIAGRHDDALSVLEEAREKMPNNPSIAKWIEKLNKGRGQ
Ga0213902_100445Ga0213902_1004452F006775MQLPKDSCACGHAIDHHDGGRGGPCNYCACAAGEPPTAFQVGVIHALHEVTITLVKLVKEIQAQRGV
Ga0213902_100827Ga0213902_1008272F006090MSLLKLRNGSSAPVPRLEGKEVLVGPDPTVAMVKGVMFGARKQFLIDTVGEEGLSEILQKLTPQTRQYVKTPLASSWCEFESLVELDRTIYESLKATHPNVLALIGAASAELGIGRAYKSLDSEELVKFLENNALFHNQYQKFGTVKFEKTPNGGRMIYSRYPCFSPVYCASAVGFFLESILRHGGTEPNVVETKCQCHGDQSC
Ga0213902_100860Ga0213902_1008603F002548MPKFAIDPSTESHGASFYERRRTRRIRIIVELTLNLIGSDRTVSHREALCLIDCARKAILELYPGFEEGFARIVQPHFERVLVQ
Ga0213902_100898Ga0213902_1008982F072730MSATVGRLLQLIAMIVLPIGLMYGLARGEIQTEVRLLAIGGFLFVAGWLMARERE
Ga0213902_100989Ga0213902_1009892F010716MAEDVVEKLQIERSILLARDGVSDHIDELDRRLRTTLDVKSKASEYAPQLIAGGAVVGLLVGFGVPKIFRRLIAIGVPIALIAATVKKMTDRDQ
Ga0213902_101009Ga0213902_1010092F059302AYMSATPHDRHEPDPPKGVTFRDIDPETGMLWADGCPGPFREVFLNGTAPTHHCPSGIFGKIVRRVFFDDEHFDEPPAITFEKFRRWANDVDRNRQQVERGLDRLKRIFQ
Ga0213902_101091Ga0213902_1010913F004159MQTPSDHERAAAGLDYDSDPIRERAAALGSTIAENGPEALFDEIENLLPESWRDQIKTFPLAAVALGVGIGVWLGMKKSDEIITAGSSMISAAAMANVSSVFNKDKE
Ga0213902_101269Ga0213902_1012692F057405VLRRIKRTAVGAYLVFAAFSLISGGFRDFLGLTCSSAVTIISFLWLEEIVEILLQPAPHLHAKRLTLRTLARFLLLGVALAVTIIVARFNPVSVLLGFSIIVVGIFGEALYSVYRSFAG
Ga0213902_101334Ga0213902_1013341F105394KHNPQDAKAFHYLALTAARIPGQTRQAVQAIETAIQREPMNATFLKDGGLLCKRAGLVAKAERYLEEAAKWDATNAEVQVALAELRQGRVESKETGKGFSLFRKN
Ga0213902_101465Ga0213902_1014652F060315MGENLGLGTMTGEHEKPEFDSTNTKIHGEPPPGSPMPGVEREEGTEVKEEVNPNTE
Ga0213902_101476Ga0213902_1014761F002279MPEWARLVGDSLKQHGPWHTYAKLSEARGAYPNDLSLRGYVEIVRNLIVHAFLEHPRGMQAVPRLSAEFLSNFDRFNLNAQEGYLVSLIDGRLDIQKLQILSPFDPFTTLFILAKLEHENAITVPK
Ga0213902_101871Ga0213902_1018711F047898MNLVGTWNLEVATPFGKHPATLVFEGTGGALTAHISSRLGDAPLESLTVTHDGFDARVTMEFQGKPYNASIKGQVENNDALNGTIKVSLPIAPPIRYTGTRAG
Ga0213902_102603Ga0213902_1026032F003258MRSLTPGQWYLRFTCEQCEAKQILFADLSRGEARIRATYVVECSICLHKGAYDGDDIERYQHPLEQEA
Ga0213902_102677Ga0213902_1026771F034879MEESVAVSALLLNILFGLIPTFILGASIAAGVDDDRYHRKMFLLVYGLWAITLSMWNWMRSYPVAWIAVWAVFGVVALIASRALSR
Ga0213902_102868Ga0213902_1028681F027283ILTVAPTRDQKVVKRWTLKGEPHGVAIGRDGIVYVGLAGPQSVLAIDSKTGTIAKEIVLDSAEIASTKELVTLRTNADRSRLYIANGSDESASILSLPDLAVLREITIEGEAIRDALPDPNGRYLYLLGRRVHVYDAKGETELRTIDIDDPMAIATTSNGATLAVLGTEDFGNTRATVVALYDTNGFAELARDPLQTDRRVEAALFAAGDRALIALGREYMYEKPLVSRAAKTMSSSSNGTMRMKIDFGDLVNSDRICL
Ga0213902_103060Ga0213902_1030602F101779VITFRKEETMNQETRADLYVVECVWCGAKIREDNEQDGDAVCLKCFYQMLSNHLQSQKRAAYGDFVSDR
Ga0213902_103137Ga0213902_1031372F043603MNNFAQTRTSKLESALSVSYLLPTMLAVNTCALLALEQLGGIPDWVKTAAAIFLSF
Ga0213902_103378Ga0213902_1033782F058376LYNLPPMPTEVETLRELARAYWSGKNVTCPKHPGVAMAGSFVQTTFADHIFLTCPRDKATITIPQRPKQMEFYDQQVE
Ga0213902_103481Ga0213902_1034812F040840LSAKAENLIPVQLSRVNETEGNQSEGAEHPRKTFVEPEVSFPVDVLESTTFFQFTESGAT
Ga0213902_103481Ga0213902_1034813F040840LNTKSENLIPVQLSRVEEEDAARPSERAAGKKKFVEPTISFPIDVLEATTFFQVTDSGNVNMNP
Ga0213902_103669Ga0213902_1036691F000382MGDADAALTWNTLPSATRELLAGKLTGLWNAPSDAAAFDSWPLDKKQALLLLVDRLYAKDLWKLVKRVTNVYGEGGVGLEFEAWPMIESTLSRRRDFTRRFANHNDTHGGFYEKDRGTAILHFLFQEGEPRRWYVHFDLYSPVHSPGSALKHFR
Ga0213902_104126Ga0213902_1041261F003588SMLIEGNTEDGVEPTTDEEKQKLEEQPLRVRYEDRLLSVKAKQQPLPLILLKIGEELGIPVDIQNERLDPIDVNISKLPIEDVARQLSPHIKLYYRADLTRAEKRALRMVLAEPPKAVQG
Ga0213902_104126Ga0213902_1041262F001123MQNEIINEENSVKNANGADELKKAFVEPSISVPVDVLEATTFFQVASSGATN
Ga0213902_104360Ga0213902_1043601F013018LLDGDDARGDGSYERPYKSWREALRHVGSGDTVIAKNGDYRKAGPEARWGGLHLALTMSDKLEPGDPRRPVPDKTRPETVGVYRYDPARPLTIRAETRHGVIIDSVRLHLVRGVVIDGFDINPNPYYTDASGKKLNRRRNGVHGDSVYEPDDRFNKVKTNDPPGGHTAAWYDRALWTSYVTVRNCKVHYECPPGGCTPSYDPLQDDDRLYLVKFNQ
Ga0213902_104942Ga0213902_1049421F001486DPCSFARFESYSMTARDNLVVSTRPGERPVEPVSIWAAKDATVVNNTFVGVGERGVLLVRPGNEVDSPARGCGRSVRLTLTEGLTLRGNVFVLSGVVDETMLYQTAGEGVRVTGFAHDHNTFFNGGRDVPTGGLRDPNRESGFSKADPLLPGGSGTDYASWMATARLAKGSPSEGRGTRAVTRK
Ga0213902_105115Ga0213902_1051152F010196VPVSGIRLVIGTFVMGIAVPIILFFLLGLHSWTELFTLAATTFLAWGVADLFASILEKPRLRNRSPGQALREDWERRAKE
Ga0213902_105517Ga0213902_1055172F073080MTLVIKSLTMNERQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRTEEEATEVVEHLWRLEREQAAS
Ga0213902_105725Ga0213902_1057251F089143ELVLTDTNLKIKHTLTMTEGEKGAGPLSRPTPRVDAEDDEP
Ga0213902_105838Ga0213902_1058381F084700VKLQEFDVMTAVQLPISERVLDRLADILFATDEILDMLDRDEGYPIDTTVDVGKSVRNVYDQVNELMKKLAD
Ga0213902_106165Ga0213902_1061652F026373MLVNRSFDEIRVYEDVAERTGVQFARSDVRRSAACCSSLTQLHRKARASGDGSYYLPTGAWPAHITQLELKKPWLVISSLPP
Ga0213902_106195Ga0213902_1061951F094371MRKTLALLLAAGFLYLVPSHPVSVKSQALAATSKFQTVANPIPNRYIVVLATTDLSPIATPAPTPVQAAPKGGAQASN
Ga0213902_106323Ga0213902_1063231F049210HEHGGRTLEGRLTLMELLRRMRKGGYLSAHGIEAADQFEMFEKLIDEVAGSGSLKLYYIVDRREFIDKVKSVYAAYA
Ga0213902_106433Ga0213902_1064332F003710RVLQEFRRLNAETLGIATIKAIKHPAGGGEAPAIDLVSKGFLTADATRENFALTQKGKDFLAIDAKPMNEESAAGEADEVAV
Ga0213902_106446Ga0213902_1064461F075305VISQTLKDKPDDRLRAQLRTALTQLILAGLKPPEIKSLINEELDELLKESRR
Ga0213902_106456Ga0213902_1064562F021852MTDFEDRVRRMAREAIREIGRDPGEIADVTEPPGADFCVIAFADPDVKPIEIPKPLGAGESQELDEIRRALQYRFGS
Ga0213902_106519Ga0213902_1065191F007195SAVRHAPKRAMVTLAKPAVDVYRRGETLSAVVRAAGQLEGLRMRLNISDDLGRLLAVLEAPARGERTFTYKLDDFVGKQAFLAAELSDGRGAVVDQLRAKPVLVVPDKRREREYTALVAFGGTKHYLQDAQMRQVRAAAADTGFTWSGGDVDNSLNVPRGTFGVYWYDRGPTTPEAMEKA
Ga0213902_106832Ga0213902_1068322F009860PVEGMANGKQIELLSRAIVNRLEDRGLVEFGDAEAGIQVVARILEENFTAVDAIEQEARQRFGRREPSDDELMEEMRRVAAERNFIL
Ga0213902_106838Ga0213902_1068382F037364WTQQGRMMNGQGVIMTPAVPVAKGDLLALGNPHDQLVAIGEVVNVLREGGPVEVKPKVVLAG
Ga0213902_107383Ga0213902_1073831F097545DGTTTLTDAQALTVTLTDVTLWVGPGGSLDNGGTALDVTDGATFSDDTVEAGTLGFSGHVGSLKLASLKDLGAAAGPGDDVSYLALDLSGVNASLVGLEDVLVFNAWDIGVLVNSVSDGDADATNDPDKLDWSAFTVSAGIGLPDFDDALNADIDLSITGAAALNVLDGL
Ga0213902_107527Ga0213902_1075271F058428QEILALIKAGYLDKQIVKQLSCHHRTVARLRLQVSEPRLCDCGQLFYHTKKCQKRPGWQTLVRERRTAFDDLLVRINRRVPSTLPEEMRADICQEMLLQMMKSIDNVLTKVPEFIREYKKDYPFQYHSFDANPKLLERIAG
Ga0213902_107583Ga0213902_1075831F010125RSQAKPYKPEAWRDDDATSDDLLSFHTPLADPTAREQCRLLDLLGRINYKILSGNRVYVEVDGIVYKTLYGGYWRSVFTGMEHFLLRCEQVSDNAWRKDDNTSVDLPIRYSNDGWTARGHSLSFILNRDLVSH

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