Metagenome / Metatranscriptome Family F073080

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073080
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	70 residues
Representative Sequence	MNERQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQSAGA
Number of Associated Samples	53
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	35.83 %
% of genes near scaffold ends (potentially truncated)	17.50 %
% of genes from short scaffolds (< 2000 bps)	71.67 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (40.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.95% β-sheet: 0.00% Coil/Unstructured: 41.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.104.1.1: Cytochrome P450	d2ij2a_	2ij2	0.70216
a.104.1.0: automated matches	d5xw2a_	5xw2	0.69756
a.104.1.0: automated matches	d6gmfa_	6gmf	0.68465
a.104.1.0: automated matches	d3b6ha1	3b6h	0.68147
a.104.1.0: automated matches	d6n6qa_	6n6q	0.67948

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF10990	DUF2809	5.04
PF02687	FtsX	2.52
PF00903	Glyoxalase	1.68
PF13304	AAA_21	1.68
PF13551	HTH_29	0.84
PF00717	Peptidase_S24	0.84
PF13175	AAA_15	0.84
PF05766	NinG	0.84
PF13229	Beta_helix	0.84
PF02517	Rce1-like	0.84
PF14329	DUF4386	0.84
PF13683	rve_3	0.84
PF05534	HicB	0.84
PF01192	RNA_pol_Rpb6	0.84
PF12950	TaqI_C	0.84
PF13451	zf-trcl	0.84
PF13676	TIR_2	0.84
PF12697	Abhydrolase_6	0.84
PF12844	HTH_19	0.84
PF07508	Recombinase	0.84
PF13438	DUF4113	0.84
PF10045	DUF2280	0.84
PF13419	HAD_2	0.84
PF12965	DUF3854	0.84
PF03060	NMO	0.84
PF00072	Response_reg	0.84
PF02627	CMD	0.84
PF13564	DoxX_2	0.84
PF13426	PAS_9	0.84
PF03551	PadR	0.84
PF13592	HTH_33	0.84
PF13610	DDE_Tnp_IS240	0.84
PF05299	Peptidase_M61	0.84
PF00383	dCMP_cyt_deam_1	0.84
PF04542	Sigma70_r2	0.84
PF12804	NTP_transf_3	0.84
PF02080	TrkA_C	0.84
PF00535	Glycos_transf_2	0.84
PF00486	Trans_reg_C	0.84
PF03544	TonB_C	0.84
PF09962	DUF2196	0.84
PF13588	HSDR_N_2	0.84
PF13401	AAA_22	0.84
PF01471	PG_binding_1	0.84
PF04616	Glyco_hydro_43	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.84
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.84
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.84
COG4226	Predicted nuclease of the RNAse H fold, HicB family	General function prediction only [R]	0.84
COG3975	Predicted metalloprotease, contains C-terminal PDZ domain	General function prediction only [R]	0.84
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.84
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.84
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.84
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.84
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	0.84
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.84
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.84
COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	Defense mechanisms [V]	0.84
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.84
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.84
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.84
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.84
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.84
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.50 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	1.67 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	1.67 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	1.67 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.67 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002897\|JGI24804J43974_1014419	Not Available	621	Open in IMG/M
3300007790\|Ga0105679_10464747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1122	Open in IMG/M
3300007790\|Ga0105679_10559176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3993	Open in IMG/M
3300009789\|Ga0126307_10172272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1735	Open in IMG/M
3300009789\|Ga0126307_10410854	All Organisms → cellular organisms → Bacteria → Acidobacteria	1091	Open in IMG/M
3300009789\|Ga0126307_10907188	Not Available	712	Open in IMG/M
3300009789\|Ga0126307_11383620	Not Available	570	Open in IMG/M
3300009789\|Ga0126307_11571223	Not Available	534	Open in IMG/M
3300009840\|Ga0126313_10805849	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300009840\|Ga0126313_11386781	Not Available	582	Open in IMG/M
3300009840\|Ga0126313_11768136	Not Available	517	Open in IMG/M
3300010036\|Ga0126305_10252938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1133	Open in IMG/M
3300010036\|Ga0126305_11308357	Not Available	500	Open in IMG/M
3300010037\|Ga0126304_10021394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3701	Open in IMG/M
3300010037\|Ga0126304_10044796	All Organisms → cellular organisms → Bacteria	2666	Open in IMG/M
3300010037\|Ga0126304_10130760	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1610	Open in IMG/M
3300010037\|Ga0126304_10171897	Not Available	1409	Open in IMG/M
3300010037\|Ga0126304_10229008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1219	Open in IMG/M
3300010037\|Ga0126304_10463330	Not Available	849	Open in IMG/M
3300010037\|Ga0126304_11194326	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300010038\|Ga0126315_10150880	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300010038\|Ga0126315_10509046	Not Available	768	Open in IMG/M
3300010038\|Ga0126315_10960540	Not Available	571	Open in IMG/M
3300010039\|Ga0126309_10513420	Not Available	740	Open in IMG/M
3300010039\|Ga0126309_10524314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300010039\|Ga0126309_11273511	Not Available	508	Open in IMG/M
3300010040\|Ga0126308_10249162	Not Available	1155	Open in IMG/M
3300010040\|Ga0126308_10543585	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300010040\|Ga0126308_11137011	Not Available	551	Open in IMG/M
3300010041\|Ga0126312_10026646	All Organisms → cellular organisms → Bacteria	3856	Open in IMG/M
3300010041\|Ga0126312_10170210	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1517	Open in IMG/M
3300010041\|Ga0126312_10511900	Not Available	859	Open in IMG/M
3300010041\|Ga0126312_10642264	Not Available	764	Open in IMG/M
3300010041\|Ga0126312_10962510	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300010042\|Ga0126314_10362364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1041	Open in IMG/M
3300010042\|Ga0126314_10647982	Not Available	772	Open in IMG/M
3300010042\|Ga0126314_10731495	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300010042\|Ga0126314_11027084	Not Available	612	Open in IMG/M
3300010044\|Ga0126310_10411992	Not Available	965	Open in IMG/M
3300010045\|Ga0126311_10012417	All Organisms → cellular organisms → Bacteria	4835	Open in IMG/M
3300010045\|Ga0126311_10012417	All Organisms → cellular organisms → Bacteria	4835	Open in IMG/M
3300010045\|Ga0126311_10313141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1185	Open in IMG/M
3300010045\|Ga0126311_10570341	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300010045\|Ga0126311_11411636	Not Available	581	Open in IMG/M
3300010045\|Ga0126311_11619823	Not Available	545	Open in IMG/M
3300010166\|Ga0126306_10078624	Not Available	2345	Open in IMG/M
3300010166\|Ga0126306_10079051	All Organisms → cellular organisms → Bacteria	2340	Open in IMG/M
3300010166\|Ga0126306_10729242	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300010166\|Ga0126306_10793528	All Organisms → cellular organisms → Bacteria → Acidobacteria	764	Open in IMG/M
3300010166\|Ga0126306_10946129	Not Available	700	Open in IMG/M
3300010166\|Ga0126306_11108217	Not Available	648	Open in IMG/M
3300010403\|Ga0134123_13507339	Not Available	508	Open in IMG/M
3300014487\|Ga0182000_10011282	All Organisms → cellular organisms → Bacteria	2184	Open in IMG/M
3300014487\|Ga0182000_10377230	Not Available	621	Open in IMG/M
3300014487\|Ga0182000_10403027	Not Available	607	Open in IMG/M
3300014488\|Ga0182001_10010748	Not Available	1971	Open in IMG/M
3300014488\|Ga0182001_10059129	Not Available	1063	Open in IMG/M
3300018432\|Ga0190275_10180883	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300018465\|Ga0190269_10330192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	906	Open in IMG/M
3300018465\|Ga0190269_11665839	Not Available	536	Open in IMG/M
3300018466\|Ga0190268_11043723	Not Available	657	Open in IMG/M
3300018466\|Ga0190268_11206226	Not Available	628	Open in IMG/M
3300018466\|Ga0190268_11344645	Not Available	607	Open in IMG/M
3300018466\|Ga0190268_12171837	Not Available	518	Open in IMG/M
3300018466\|Ga0190268_12343164	Not Available	505	Open in IMG/M
3300019377\|Ga0190264_10198740	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300019767\|Ga0190267_10522587	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300020146\|Ga0196977_1002954	All Organisms → cellular organisms → Bacteria	5178	Open in IMG/M
3300020146\|Ga0196977_1004328	All Organisms → cellular organisms → Bacteria → Acidobacteria	3942	Open in IMG/M
3300020181\|Ga0196958_10321235	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300021067\|Ga0196978_1000056	All Organisms → cellular organisms → Bacteria	54112	Open in IMG/M
3300021067\|Ga0196978_1000167	All Organisms → cellular organisms → Bacteria	33708	Open in IMG/M
3300021067\|Ga0196978_1000238	All Organisms → cellular organisms → Bacteria	29299	Open in IMG/M
3300021067\|Ga0196978_1000779	All Organisms → cellular organisms → Bacteria	15455	Open in IMG/M
3300021184\|Ga0196959_10000402	Not Available	4822	Open in IMG/M
3300021184\|Ga0196959_10003592	Not Available	2192	Open in IMG/M
3300021290\|Ga0213902_105517	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300021374\|Ga0213881_10291130	Not Available	728	Open in IMG/M
3300021374\|Ga0213881_10487453	Not Available	558	Open in IMG/M
3300026864\|Ga0209621_1017192	Not Available	529	Open in IMG/M
3300027119\|Ga0209522_1012396	Not Available	939	Open in IMG/M
3300027718\|Ga0209795_10093485	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300028551\|Ga0213905_100205	All Organisms → cellular organisms → Bacteria	1587	Open in IMG/M
3300028551\|Ga0213905_102235	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300030510\|Ga0268243_1005985	All Organisms → cellular organisms → Bacteria → Proteobacteria	2147	Open in IMG/M
3300030513\|Ga0268242_1011482	Not Available	1399	Open in IMG/M
3300031003\|Ga0074003_12931146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300031003\|Ga0074003_13853901	Not Available	1123	Open in IMG/M
3300031852\|Ga0307410_10681201	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300031852\|Ga0307410_10981155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300031901\|Ga0307406_11755226	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300032005\|Ga0307411_11091766	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300034000\|Ga0334918_007525	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300034002\|Ga0334920_000883	All Organisms → cellular organisms → Bacteria	11678	Open in IMG/M
3300034007\|Ga0334936_001804	All Organisms → cellular organisms → Bacteria → Acidobacteria	7207	Open in IMG/M
3300034009\|Ga0334944_002531	Not Available	3677	Open in IMG/M
3300034009\|Ga0334944_018584	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300034024\|Ga0334927_000359	All Organisms → cellular organisms → Bacteria	30724	Open in IMG/M
3300034024\|Ga0334927_002855	All Organisms → cellular organisms → Bacteria → Acidobacteria	6261	Open in IMG/M
3300034024\|Ga0334927_003884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5296	Open in IMG/M
3300034026\|Ga0334946_000049	All Organisms → cellular organisms → Bacteria → Acidobacteria	97675	Open in IMG/M
3300034026\|Ga0334946_000133	All Organisms → cellular organisms → Bacteria	40486	Open in IMG/M
3300034026\|Ga0334946_000244	All Organisms → cellular organisms → Bacteria	20675	Open in IMG/M
3300034026\|Ga0334946_000259	All Organisms → cellular organisms → Bacteria	19548	Open in IMG/M
3300034026\|Ga0334946_000368	All Organisms → cellular organisms → Bacteria	11774	Open in IMG/M
3300034026\|Ga0334946_017912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1152	Open in IMG/M
3300034026\|Ga0334946_029017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300034030\|Ga0334952_000399	All Organisms → cellular organisms → Bacteria	24303	Open in IMG/M
3300034133\|Ga0334916_011470	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300034137\|Ga0334943_090520	Not Available	587	Open in IMG/M
3300034172\|Ga0334913_027608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1241	Open in IMG/M
3300034172\|Ga0334913_030866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1163	Open in IMG/M
3300034172\|Ga0334913_039184	Not Available	1015	Open in IMG/M
3300034172\|Ga0334913_047048	Not Available	917	Open in IMG/M
3300034172\|Ga0334913_105260	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300034173\|Ga0334925_000348	All Organisms → cellular organisms → Bacteria	19203	Open in IMG/M
3300034221\|Ga0334937_119241	Not Available	730	Open in IMG/M
3300034376\|Ga0334923_001620	All Organisms → cellular organisms → Bacteria → Proteobacteria	3887	Open in IMG/M
3300034377\|Ga0334931_000104	All Organisms → cellular organisms → Bacteria	47991	Open in IMG/M
3300034781\|Ga0334935_001040	All Organisms → cellular organisms → Bacteria	10183	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.83%
Host-Associated	Host-Associated	4.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.83%
Plants	Host-Associated → Plants	4.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.33%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.67%
Phylloplane	Host-Associated → Plants → Phylloplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.50%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	10.83%
Sand	Environmental → Terrestrial → Soil → Sand	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.33%
Loam	Environmental → Terrestrial → Soil → Loam	1.67%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	58.33%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	12.50%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	10.83%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.67%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	40.00%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.83%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.67%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	6.67%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	4.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.67%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002897	Soil microbial communities from Manhattan, Kansas, USA - Sample 500um Nextera	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300020181	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10	Environmental	Open in IMG/M
3300021067	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300021290	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Cave_2	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300026864	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027119	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028551	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Shaw_2	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030513	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)	Environmental	Open in IMG/M
3300031003	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300034000	Biocrust microbial communities from Mojave Desert, California, United States - 14HMC	Environmental	Open in IMG/M
3300034002	Biocrust microbial communities from Mojave Desert, California, United States - 16HMC	Environmental	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034009	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS	Environmental	Open in IMG/M
3300034024	Biocrust microbial communities from Mojave Desert, California, United States - 23HNC	Environmental	Open in IMG/M
3300034026	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS	Environmental	Open in IMG/M
3300034030	Biocrust microbial communities from Mojave Desert, California, United States - 48SNC	Environmental	Open in IMG/M
3300034133	Biocrust microbial communities from Mojave Desert, California, United States - 12HMC	Environmental	Open in IMG/M
3300034137	Biocrust microbial communities from Mojave Desert, California, United States - 39SMC	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034173	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC	Environmental	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M
3300034376	Biocrust microbial communities from Mojave Desert, California, United States - 19HNC	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M
3300034781	Biocrust microbial communities from Mojave Desert, California, United States - 31SMC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24804J43974_10144192	3300002897	Soil	MNERQQAHIDFYLQRLSYWQERKPSSTTARLLAARDADEAYPLRSEEEATEVVEYLWRLEREQQGGERRETA*
Ga0105679_104647471	3300007790	Soil	MNERQQSHVDFYLERLDYWRTHRPHNPTARLLAAREADEAHPLRTEEEATEVVEYLRQLELERSAEESARADTSRG*
Ga0105679_105591761	3300007790	Soil	MPSGGARITKMNERRQAHVDFYLQRLEYWKGRRPAYSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAST*
Ga0126307_101722721	3300009789	Serpentine Soil	MNERQQAHIDFYLERLEHWRTNRPNQSTARLLAARDADAAHPLRNEEEATEVVEYLWRLE
Ga0126307_104108542	3300009789	Serpentine Soil	MNDRQQSNIDHYLQRLEYWRGRKANGSTSRLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAAS*
Ga0126307_109071882	3300009789	Serpentine Soil	MNERQQSHIDYYLRRLEYWRGRMPAASTPRLLAARDADAAYPLRTEEEAAEVVEYLRRLEQGQAAEHSQ*
Ga0126307_113836201	3300009789	Serpentine Soil	MMNERRQAHVVFYFKRLDYWKGRKPAYSTARLLAARDADEAHPLRTEKEATEVVEYLSKL
Ga0126307_115712232	3300009789	Serpentine Soil	MNERQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQSAGA*
Ga0126313_108058491	3300009840	Serpentine Soil	MNERQQSHIDFYLERLEYWKRHKPASSTARLLAARDADEAHPLRTEEEAAEVVGYLRALEMEQPADPASART*
Ga0126313_113867811	3300009840	Serpentine Soil	MNERQQAHIDFYLQRLEYWRERKPAHSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAAC*
Ga0126313_117681362	3300009840	Serpentine Soil	MNERQQSHIDYYIQRLEYWKGRKPNGSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQSAGA*
Ga0126305_102529381	3300010036	Serpentine Soil	MNERQQAHIDFYLERLEYWQAHKPNQSTARLLAARDADEAHPLRNEEEATEVVEHLWRLEKEQATDS*
Ga0126305_113083571	3300010036	Serpentine Soil	VIKSLTMNERQQSHVDYYLQRLEYWKARKSSASTPRLLAARDADEAHPLRNEVECAEVVEYLWRQEQAAG*
Ga0126304_100213945	3300010037	Serpentine Soil	MNERQQAHVDFYLQRLEYWQGRKPSGSTPRLMAARDADEAHPLRSEEEATEVVEYLWRLDRGQPPVESSTHY*
Ga0126304_100447962	3300010037	Serpentine Soil	MNERQQAHIDFYLERLEYWEGRKPSGSTPRLMAARDADEAHPLRTEQEATEVVDYLQRLEEDRTAV*
Ga0126304_101307602	3300010037	Serpentine Soil	LVIKSSAMNERQQAHIDFYLERLEYWQAHKPNQSTARLLAARDADEAHPLRNEEEATEVVEHLWRLEKEQATDS*
Ga0126304_101718972	3300010037	Serpentine Soil	MMNERQQSHIDFYLERLEYWHAHRPHQSTARLLAARDADEAHPLRTEEEAAEVVEHLRRLEREQAAC*
Ga0126304_102290082	3300010037	Serpentine Soil	MNERQQYHINYYLQRLEYWKGRKPNGSTARLLAARDADEAYPLRTEEEAREVVEYLWRLEREQSAGA*
Ga0126304_104633301	3300010037	Serpentine Soil	MNERQQAHIDFYLERLEYWKARSPSGSTPRLMAARDADEAHPLRSEAEATVVVEYLLRLERERAAG*
Ga0126304_111943261	3300010037	Serpentine Soil	SHIDFYLERLGYWKRHKPASSTARLLAARDADEAHPLRTEEEAAEVIEYLRALEMEQPTDPASART*
Ga0126315_101508801	3300010038	Serpentine Soil	MNERQQSHIDFYLERLEYWKRHKPASSTARLLAARDADEAHPLRTEEEAAEVVGYLRALEMEQPTDPASARTYRRTAHRWPPR*
Ga0126315_105090461	3300010038	Serpentine Soil	LFIRDTVIELRAMNERQQAHIEHYLERLEYWNSRKRTGTSARMLAARDADEAHPLRSEEEATEVVEYLRRLEQERATRAPS*
Ga0126315_109605402	3300010038	Serpentine Soil	MNERQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRTEDEATEVVEYLWRLEREQIAGA*
Ga0126309_105134202	3300010039	Serpentine Soil	MNERQQAHINFYLERLDYWKGRKPAYSTARMLAARDADEAHPLRTEEEATEVVEYLWRLEREQA
Ga0126309_105243142	3300010039	Serpentine Soil	MNDRQQAHIDFYLQRLEYWKGRKPASSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQAAP*
Ga0126309_112735111	3300010039	Serpentine Soil	RPRYSDSDKIPTMNERQQAHIDFYLERLDYWRRHKPASSTARLLAARDADEAHPLRSEEEATEVVEYLWRLESEQRRSH*
Ga0126308_102491622	3300010040	Serpentine Soil	MNERQQAHVDFYLQRLEYWQGRNPSGSTPRLMAARDADEAHPLRSEEEASEVVEYLWRLDRGQPPVESSSHY*
Ga0126308_105435852	3300010040	Serpentine Soil	MNERQQSHIDYYLQRLEYWKGRKPTGSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQSAGA*
Ga0126308_111370111	3300010040	Serpentine Soil	MNDRQQSHIDHYLQRLEYWRGRKANGSTSRLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAAS*
Ga0126312_100266463	3300010041	Serpentine Soil	MNGRQQAHIDFYLQRLEYWRERKPAHSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAAC*
Ga0126312_101702103	3300010041	Serpentine Soil	VIEFTALNERQQSHVAFYLQRLEYWKGRRPTNSTARLLAARDADEAHPLRTEEEAAEVVEHLWRLERESAPDA*
Ga0126312_105119001	3300010041	Serpentine Soil	MNERQQSHIDFYLERLEYWKRHKPASSTARLLAARDGDEAHPLRTEEEAAEVIGYLRALEMEHPADPASART*
Ga0126312_106422642	3300010041	Serpentine Soil	MNERQQSHIDFYLQRLEYWRRRKPAYSTARLLAARDADEAHPLRTEEEATEVVEYLWLLEREQDAEHSG*
Ga0126312_109625101	3300010041	Serpentine Soil	AMNERQQSHIDYYLQRLDYWKGRKPTGSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQSAGA*
Ga0126314_103623642	3300010042	Serpentine Soil	MNERQQSHIDYYLERLEYWRKRKPAHSTARLLAARDADEAHPLRTEEEATEVVEYLWRLERQQDEEHSG*
Ga0126314_106479821	3300010042	Serpentine Soil	MNERQRAHIAYYLERLEYWEGRKPTTTTARLLAARDADETHPLRSEEEATEVVEYLWRLERERAAERFA*
Ga0126314_107314952	3300010042	Serpentine Soil	MNARQQSHIDFYLERLEYWKRHKPASSTARLLAARDADEAHPLRTEEEAAEVVGYLRALEMEQPTDPASAKT*
Ga0126314_110270842	3300010042	Serpentine Soil	MNERQQAHIDYYLQRLEYWKGRRPNGSTARLLADRDADEAHPLRSEEEATEVVEYLWRLEREQSAGA*
Ga0126310_104119922	3300010044	Serpentine Soil	MNERQQSHIDYYLQRLEYWRGRKPTYSTARLLAARDADESHPLRSEEEATEVVEYLWQLEREQAAT*
Ga0126311_100124172	3300010045	Serpentine Soil	MNERQQTHIDYYLQRLEYWKGRKPTGSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQAAGA*
Ga0126311_100124176	3300010045	Serpentine Soil	MNERQQSHIDFYLQRLEYWKGRKPTGSTARLLAARDTDEAHPLRTEEEATEVVEYLWRLEREQSAGA*
Ga0126311_103131412	3300010045	Serpentine Soil	MNERRQSHIDFYLQRLEYWKDGKPASSTARLLAARDADEAHPLRTEEEATQVVEYLWRLERGRAPAPD*
Ga0126311_105703412	3300010045	Serpentine Soil	MNERQQAHIDYYLQRLAYWWERKPASTTARLLAARDADEAHPLRTEEEATEVVEYLWRLEQERPGGERRETA*
Ga0126311_114116361	3300010045	Serpentine Soil	MNERQQAHIDFYLQRLEYWDAHRPSQSTARLLAARDADEAHPLRNEEEAREVVEYLWRLEREHSTGV*
Ga0126311_116198231	3300010045	Serpentine Soil	MNERQQSHIDFYLERLEYWKRHKPASSTARLLAARDADEAHPLRTEEEAAEVVGYLRALEMEQPTDPASART*
Ga0126306_100786241	3300010166	Serpentine Soil	MMNERRQARVDFYPQRLDYRQRHRPHNSTARLLAARDADEAHPLRTEEEAAEVVEYLWRLERQQSAGV*
Ga0126306_100790513	3300010166	Serpentine Soil	MNERQQSHIDYYLQRLEYWKGRKPTGSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQSAGA*
Ga0126306_107292421	3300010166	Serpentine Soil	QSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQSAGA*
Ga0126306_107935282	3300010166	Serpentine Soil	MNERQQSHIDYYLQRLEHWKGRKPAYSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAVGD*
Ga0126306_109461292	3300010166	Serpentine Soil	MNERQQSHIDYYLERLEYWRRRKPAYSTARLLSARDADEAHPLRTEEEATEVVEYLWLLEREQDEEHSG*
Ga0126306_111082171	3300010166	Serpentine Soil	MMNERRQAHIDFYLERLEYWRSYRPHHSTARLLAARDADEAYPLRMEAATEVVEYLRRVEQEESAEESRPL*
Ga0134123_135073391	3300010403	Terrestrial Soil	MNERQQSHIDFYLQRLEYWEGRKPTSSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAAGT*
Ga0182000_100112823	3300014487	Soil	MNDRQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQPGGEQRETA*
Ga0182000_103772301	3300014487	Soil	ERQQSHIDSYLHRLEYWKERRPAYATARLLAARDADEAHPLRSEKEATEVVEYLRRLEREQAAP*
Ga0182000_104030271	3300014487	Soil	SPAMNERQQSHIDSYLHRLEYWKERRPAYATARLLAARDADEAHPLRTEEEATEVVEYLRRLELEQNAEHLT*
Ga0182001_100107482	3300014488	Soil	VNERQQAHLDYYLRRLEYWIGRKPACSTARLLAARDADEAHPLRTEEEATEVVEYLQRLEREQDAGDGT*
Ga0182001_100591293	3300014488	Soil	MNERQQSHIDFYLERLAYWKGLKPQFSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQTSN*
Ga0190275_101808833	3300018432	Soil	MNERQQAHIDFYLQRLEYWKGRKPSVSNARLLAARDADEEHPLRTEEEATEVIEYLWQLEHEQAAG
Ga0190269_103301922	3300018465	Soil	MNERQQAHINFYLERLDYWRNHRPHNSTARLLAARDADESHPLRSEEEATEVVEYLW
Ga0190269_116658392	3300018465	Soil	MNERQQAHIDHYLRRLEYWRGRSPSSSTPRLLAARDADEAHPLRTEEEATEVLEHLRRLEQEQCAESPK
Ga0190268_110437231	3300018466	Soil	MNERQRAHIDFYLERLGYWKGRRPQGSNARLLSARDADEAHPLRTEEEATEVVEHLWRLEREQVTGV
Ga0190268_112062261	3300018466	Soil	RPLQPPSAKLSKMNERQQAHIDFYLERLDYWRAHRPHNSTDRMLAARDADEAHPLRTEEEATEVVEHLWRLEQGQAAV
Ga0190268_113446452	3300018466	Soil	MNERQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQSAGA
Ga0190268_121718371	3300018466	Soil	MNERQQAHINFYLERLDYWKGRKPASSTARMLAARDDDEAHPLRTGEEATEVVEYLW
Ga0190268_123431641	3300018466	Soil	MNQRQQSHIDYYLQRLAYWKVRKPASSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQDAERSQ
Ga0190264_101987401	3300019377	Soil	LLNICVRLCARAVLNSPGMNERQQAHIDFYLQRLEHWRSRKPGTTTARLLAARDADEAHPLRSEEEATEVVEHLRRLEQEQSAEESRPR
Ga0190267_105225871	3300019767	Soil	MNERQQSHIDYYLQRLEYWKGRKPTGSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQSAGA
Ga0196977_10029548	3300020146	Soil	MNERQQAHIDYYLQRLEHWKGRKPAYSTARLLAARDADEAQPLRTEAAATEVVEYLWRLERKQAGGGRRETAQG
Ga0196977_10043283	3300020146	Soil	VNERQQAHIDFYLRRLEYWKGRKPASSTARLLAARDADEAHPLRTEEEATEVVDYLWRLEREQAAG
Ga0196958_103212352	3300020181	Soil	ESSAMNERQQSHIDYYLERLEHWKGRKPAYSTSRLLAARDADEAHPLRSEVEATEVVEYLWRREREESGGGRRETAQG
Ga0196978_10000564	3300021067	Soil	VVIKSPAMNERQQAHIDFYLERLGYWKQHRPASSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEKGQATEQTA
Ga0196978_100016716	3300021067	Soil	LGSGDKIPLMNERQQSHIDFYLQRLEYWKGRKPIYSSARLLAARDADEAHPLRTEDEATEVVEYLRRLEREPSGEKSC
Ga0196978_100023815	3300021067	Soil	MNERQQSHIDYYLQRLEYWKGRKPAYSTARLLAARDADEAHPLRTEEEAAEVVEYLWRLERETAAGT
Ga0196978_10007799	3300021067	Soil	MNERQQSHIDYYLQRLQYWRERKPAYSTARLLAARDADEAHPLRTEEEAAEVIEYLRRLEQAQSAQESRLR
Ga0196959_100004024	3300021184	Soil	MNERQQSHIDYYLRRLEYWKERRPAYSTARLLAARDADEAHPLRTEEEATEVVEYLRRLELEQAAEK
Ga0196959_100035924	3300021184	Soil	MNERQQAHIDHYLERLAYWKGRKPAYSTARLLAARDADEAHPLRTEDEATEVVEYLWRLEKEQTGEK
Ga0213902_1055172	3300021290	Soil	MTLVIKSLTMNERQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRTEEEATEVVEHLWRLEREQAAS
Ga0213881_102911301	3300021374	Exposed Rock	MNERRQAHINIYLRRLEDWKGRKPAYSTARLLAARDADEAHPLRTEEEEEATEVVEYLWRLEREHAAG
Ga0213881_104874532	3300021374	Exposed Rock	MVLWLPSGGARIITVNERQQLHINFYLQRLEYWKGRKPAYSTARLLAARDADEAHPLRTEEEATEVVEYLWRREREQVTD
Ga0209621_10171921	3300026864	Forest Soil	VLESPVMNERQQAHINFYLQRLEYWKGRKPAYSTAMLLAARDADEAHPLRTEEEATEIVEYLWRLEREQATG
Ga0209522_10123962	3300027119	Forest Soil	VLESPVMNERQQAHIDYYLQRLAYWKGRKPAHSTARLLAAQDADEEHPLRTEEEATEVVEYLW
Ga0209795_100934852	3300027718	Agave	CRTYRAPRSTMIECKTMNERQQAHIDYYLQRLEHWKSRRPAYSTARMLAARDADEAHPLRSEEEATEVVEYLWRLEREEAAT
Ga0213905_1002051	3300028551	Soil	VSDSGVSGAAAVRRVLESSAMNERQRAHIDFYLERLGYWKELRPQGSTARLLAARDADEAHPLGTEEEATEVV
Ga0213905_1022352	3300028551	Soil	MNERQQAHVVYYLQRLEYRQGHKPSGSTPRLMAAGDADETHPLRSEEEATEVVEHLWRLERGNADEEGCEAEQI
Ga0268243_10059852	3300030510	Soil	MNDRQQSHIDYYLQRLEYWKGRKPNGSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQPGGEQRETA
Ga0268242_10114822	3300030513	Soil	PGDRRRRAQWRAGGWAVNERQQAHLDYYLRRLEYWIGRKPACSTARLLAARDADEAHPLRTEEEATEVVEYLQRLEREQDAGDGT
Ga0074003_129311462	3300031003	Soil	MIKSPAMNVRQQSHIAFYLERLGYWQTHKPHHSTAKLLAARDADEAHPLRTEEEATEVVEYLWRLEREHAN
Ga0074003_138539012	3300031003	Soil	MNERQQSHIDYYLQRLEYWKSRKPASSTARLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAAGA
Ga0307410_106812012	3300031852	Rhizosphere	MNERQQAHIDYYLQRLEYWQGRKPAYSTARLLAARDADEAHPLRSEEEATEVVEHLWRLERERTAG
Ga0307410_109811552	3300031852	Rhizosphere	MMNERQQAHIDFYLERLEYWQRRKPSGSTPRLMAARDADEAQPLRSEEEATEVVEYLWRLEREQIAGGTTQH
Ga0307406_117552262	3300031901	Rhizosphere	VRGAVIEWRTMNERQQSHIDFYLQRLEHWKSRKPAYSTARLLAARDADEAHPLRSEEEATEVVEHLWRLERERAAG
Ga0307411_110917662	3300032005	Rhizosphere	MMNERQQAHIDFYLERLEYWQRRKPSGSTPRLMAARDADEAQPLRSEEEATEVVEYLWRLEREHIAGGTTQH
Ga0334918_007525_1197_1400	3300034000	Hypolithic Biocrust	MNERQQAHIDFYLQRLEYWKGRKPAYSTARLLAAKDSDESLPLRTEEEATEVVEYLWRLEREQVAGT
Ga0334920_000883_3401_3619	3300034002	Hypolithic Biocrust	MNERQQAHIDHYLRRLAYWRERKPAATTARLLAARDADEAHPLRSEEEATEVVEYLWRLEQEQSGGARRETA
Ga0334936_001804_3003_3221	3300034007	Biocrust	MNERQQAHIDHYLRRLAYWRERKPTSTTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQPGGGRRETA
Ga0334944_002531_2704_2922	3300034009	Sub-Biocrust Soil	MNERQQAHIDHYLRRLAYWREHRPASTNARPLAARDADEAHPLRSEEEATEVIEYLWRMEREQPGGERRETA
Ga0334944_018584_62_292	3300034009	Sub-Biocrust Soil	MTLVIKSPAMNERQWSHIEYYLQRLEYWRGRKPNGSTAQIFAARDADEAHPLRTEEEATEVVEYLWRLEREQVAGN
Ga0334927_000359_2479_2697	3300034024	Hypolithic Biocrust	MNERQQAHIDYYLRRLAYWREHKPASTTARLLAARDADEAHPLRSEEEATEVVEYLWRLERERPGGERRETA
Ga0334927_002855_3010_3219	3300034024	Hypolithic Biocrust	MNERQQSHINFYLERLEYWRRLQRCYSTPRMLAARDADETHPLRTEEEATEVVEYLQRLEREQALEQPK
Ga0334927_003884_607_807	3300034024	Hypolithic Biocrust	MNERQRAHVDFYLRRLEYWQSHRPHNSTARLLAARDADEAYPLRTEEEATEVVEYLWRLEREQAAT
Ga0334946_000049_16374_16574	3300034026	Sub-Biocrust Soil	MNERQQANIAYYLERLEYWKGRRPVQSTARLLAARDADEAHPLRTEKEATEVVEYLPRLERERTAT
Ga0334946_000133_3008_3205	3300034026	Sub-Biocrust Soil	MNDRQQSHVDFYLQRLEYWRTHRPHQSTARLLAARDADEAHPLRTEEEATEVVEYLRRLEQGQSV
Ga0334946_000244_2720_2923	3300034026	Sub-Biocrust Soil	MNGRQQSHIDFYLQRLEYWKGHKTAYSTARRLAARNADEVHPLLTEDEATEVVELLWRLGREQDACA
Ga0334946_000259_16542_16754	3300034026	Sub-Biocrust Soil	MNERQQAHIAHYLRQLAYWQERKSSVSTPRLLAARDADEAHPLRTEEEAAEVVEHLRRLEGRHNDEAAAR
Ga0334946_000368_1209_1427	3300034026	Sub-Biocrust Soil	MNERQQAHMDHYLRRLTYWRERKPATTTARLLAARDADEAHPLRSEEEATEVVEHLCRLELEQAGGERRETA
Ga0334946_017912_625_861	3300034026	Sub-Biocrust Soil	MALVIKSPTMNERQQAHIDYYLQRLEYWKGRKPAHSTARLLAARDADETHPLRTEEEATEVVEYLWRLEREPSEEKSY
Ga0334946_029017_337_555	3300034026	Sub-Biocrust Soil	MNERQQAHIDHYLRRLAHWRERKPISSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREKAGGERREMA
Ga0334952_000399_10648_10851	3300034030	Biocrust	MNERQQAHIEFYLQRLEYWKGRKPAASNARLLAARDADEAHPLRTEEEEATEVVEYLWRLEREQAAG
Ga0334916_011470_521_751	3300034133	Hypolithic Biocrust	MLYELLKSSAMNSRQQAHVGYYLQRLEHWKAHNPSGSTPRLMAARDADEAHPLRNEEEATEVVEYLWRLERERATS
Ga0334943_090520_355_585	3300034137	Biocrust	GAEAADDGDEMNERQQANIAYYLERLEYWKGRRPVQSTARLLAARDADEAHPLRTEKEATEVVEYLPRLERERTAT
Ga0334913_027608_260_460	3300034172	Sub-Biocrust Soil	MNERQQSHIDYYLQRLEYWRGRKPNGSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQATS
Ga0334913_030866_752_967	3300034172	Sub-Biocrust Soil	MNERQQAHIDFYIQRLAYWKGRKAVSSTAKLLAARDADEMHPLRSEEEATEVVEYPWRLEQGQSAEESRLH
Ga0334913_039184_770_955	3300034172	Sub-Biocrust Soil	MNERQQAHIEHYLRRLEYWKARKPTQSTAQMLAARDADEEHPLRSEEECQEVVEYLRRLE
Ga0334913_047048_264_464	3300034172	Sub-Biocrust Soil	MGGRRQAHIAYYLRRLEYWKGRKPAYSAVRLLAARDADEAHPPRTGEEGTEVTEYLWRLGGDRTAG
Ga0334913_105260_3_170	3300034172	Sub-Biocrust Soil	MNERQQAHIDHYLERLEYWKGRKSASSTARLLAARDADEAHPLRTEEEAAEVVEYL
Ga0334925_000348_354_572	3300034173	Hypolithic Biocrust	MNERQQSHIDYYRQRLEYWKGRKPNGSTARLLAARDADEAHPLRSEEEATEVVEYLWRLEREQPGGERRETE
Ga0334937_119241_240_446	3300034221	Biocrust	MTERQQAHIDYYLRRLEYWRERKPASTTARLLAARDADEAHPLRSEEEATEVVEYLWRLEQEQTGGAR
Ga0334923_001620_2541_2759	3300034376	Hypolithic Biocrust	VGRRAVNQRQQSHIDYYLQRLEYWKSRKPTYSTARLLAARDAEEAHPLRTEEEAKEVVEYLRRLEGEQSGEN
Ga0334931_000104_45441_45650	3300034377	Sub-Biocrust Soil	MNERQQSHIDFYLQRLEYWKGRKPAYSTVRLLAARDADEAHPLRTEEEATEVVEYLWRLEREQAASKAL
Ga0334935_001040_2708_2893	3300034781	Biocrust	MNEHQGSHIDFYLGHLKYWNRQRPRFSSARLLAARDADEAHPPRSEEEATEVVEYSVAAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073080

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences