NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014833

3300014833: Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - influent sewage



Overview

Basic Information
IMG/M Taxon OID3300014833 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118577 | Gp0137209 | Ga0119870
Sample NameActivated sludge microbial communities from Shanghai, China - wastewater treatment plant - influent sewage
Sequencing StatusPermanent Draft
Sequencing CenterTongji University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size493408896
Sequencing Scaffolds28
Novel Protein Genes31
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae2
Not Available11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Bingvirus → unclassified Bingvirus → Streptomyces phage ClubPenguin1
All Organisms → cellular organisms → Bacteria → Spirochaetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin0381
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 28-67-81
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActivated Sludge Microbial Communities From Shanghai, China
TypeEngineered
TaxonomyEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationChina: Quyang, Shanghai
CoordinatesLat. (o)31.3Long. (o)121.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003605Metagenome / Metatranscriptome477Y
F010914Metagenome / Metatranscriptome297Y
F021533Metagenome / Metatranscriptome218Y
F027486Metagenome194Y
F040068Metagenome / Metatranscriptome162N
F044576Metagenome / Metatranscriptome154Y
F045728Metagenome / Metatranscriptome152Y
F050485Metagenome / Metatranscriptome145Y
F054846Metagenome / Metatranscriptome139N
F055725Metagenome / Metatranscriptome138Y
F058934Metagenome / Metatranscriptome134N
F060985Metagenome / Metatranscriptome132N
F068773Metagenome / Metatranscriptome124N
F069722Metagenome / Metatranscriptome123Y
F071823Metagenome121Y
F074867Metagenome / Metatranscriptome119N
F074964Metagenome119N
F075867Metagenome / Metatranscriptome118N
F076005Metagenome / Metatranscriptome118N
F080163Metagenome115N
F081921Metagenome / Metatranscriptome114Y
F082613Metagenome / Metatranscriptome113N
F084812Metagenome / Metatranscriptome112Y
F085718Metagenome111N
F087089Metagenome / Metatranscriptome110N
F090323Metagenome108N
F093883Metagenome106N
F097376Metagenome / Metatranscriptome104Y
F102167Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119870_1002633All Organisms → cellular organisms → Bacteria7480Open in IMG/M
Ga0119870_1011253All Organisms → Viruses → Predicted Viral3426Open in IMG/M
Ga0119870_1017543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae2629Open in IMG/M
Ga0119870_1020737Not Available2377Open in IMG/M
Ga0119870_1026713All Organisms → cellular organisms → Bacteria2038Open in IMG/M
Ga0119870_1033863All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Bingvirus → unclassified Bingvirus → Streptomyces phage ClubPenguin1761Open in IMG/M
Ga0119870_1036983All Organisms → cellular organisms → Bacteria → Spirochaetes1666Open in IMG/M
Ga0119870_1049815Not Available1376Open in IMG/M
Ga0119870_1055264All Organisms → Viruses → Predicted Viral1287Open in IMG/M
Ga0119870_1057998Not Available1248Open in IMG/M
Ga0119870_1066280Not Available1146Open in IMG/M
Ga0119870_1082289Not Available999Open in IMG/M
Ga0119870_1088690Not Available953Open in IMG/M
Ga0119870_1089556All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus947Open in IMG/M
Ga0119870_1103097All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium866Open in IMG/M
Ga0119870_1104147All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium860Open in IMG/M
Ga0119870_1116032All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae804Open in IMG/M
Ga0119870_1131651Not Available743Open in IMG/M
Ga0119870_1148832All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria689Open in IMG/M
Ga0119870_1155448Not Available670Open in IMG/M
Ga0119870_1162141All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038653Open in IMG/M
Ga0119870_1164773Not Available646Open in IMG/M
Ga0119870_1167233Not Available641Open in IMG/M
Ga0119870_1181278All Organisms → cellular organisms → Bacteria610Open in IMG/M
Ga0119870_1182857All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium606Open in IMG/M
Ga0119870_1222314All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 28-67-8536Open in IMG/M
Ga0119870_1224705Not Available532Open in IMG/M
Ga0119870_1227327All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes528Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119870_1002633Ga0119870_100263312F060985MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPGFKPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFGYWFPPYKKYIPHRIRVLRLALKDLERIKEEYGKD*
Ga0119870_1011253Ga0119870_10112535F054846MTTENLNLSELGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0119870_1017543Ga0119870_10175433F074867MSNRGIVELTLNGEVFELHPTFENLDKLETVLNKGAVGFLQNDLSSGMFKTGDVVSIIQVCAIPPRGAKRPSWWNREGIGRAVLNEGLLNCTRVVVEFLTKALTAGSETDIKTVGADEDDEKK*
Ga0119870_1020737Ga0119870_10207373F050485MSLKEMAPRYQVGDRVSIDKSVTTMPALPAYVGVVQNVVPSYVDKTVGYNLALDGDPRPGRLWFFLQNQLTPA*
Ga0119870_1026713Ga0119870_10267132F080163MKTIKFLQESFETKERFQQEISFKYSYNQNTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKSYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESEVLNSEIELLQEKLDLIREEICELIGVDPNLEKQGHEDNYIFNLNINSDNQIGFLLQATEL*
Ga0119870_1033863Ga0119870_10338631F003605MAVGDAASAAGYATVPETGEEGRVRWGARELNRTRDYIAAVKALIPGTKTAYREAAGISSGTAHPTGGNDGDIY
Ga0119870_1036983Ga0119870_10369835F084812MAKMSSLKLDNWSKGLLISIISKAISGDREMTPDDIEKLKEIKKLL
Ga0119870_1039841Ga0119870_10398412F071823LVKNLPAIQETLVRFLGQEDPLEKGKATHSSILAWRIP*
Ga0119870_1049815Ga0119870_10498152F040068MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQEIPPIINEQMAAWPDPRPIGQPVFVPSPDYQYFIFNYFIVSVQSRATTFDATATVGLNAPIASMDWYVDDVYVISGLVPTVTMSGGVHTISVLITDDYGNQQTFSFEYEQGVDLSFNFITGEYFYFIDGVKFDFIG*
Ga0119870_1049815Ga0119870_10498153F082613LNQQTVTVAGPNTTTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0119870_1055264Ga0119870_10552642F090323AINELNANFERLFNNQQAAPTPTQLPTQAQEVPTQAQEVPTQAQEVATQAQEVALLPDVAKTMNRTREDLQAMCLAATKRNAANRDIIKAIMLSNFEARKTGDLADNQVDMCYAMIAEATQDD*
Ga0119870_1057998Ga0119870_10579982F076005MTGEIMKHFKIKVQYLNGNEFCFECDAKTNWQAAALARIKGKELGLGGAMDVKETIVEEA
Ga0119870_1066280Ga0119870_10662802F055725MAFFNGEGIDLPTITKLAEAGVSLNGMATITGHSRTGIKRALERNKIPFATHVRERFVVVDGVLTSLGDACNAQGFSRKAMYAWRVKRGLNEQEGFDAYIVYQQSKRTIDKPILTFKNATVIYKKERYTLTEISDKLKLNKQRFEVFMRQNRYAQNAFERYCYMRGL*
Ga0119870_1082289Ga0119870_10822891F058934MRQFSYPNSQFTNILGGASIGWKLNVYDTGTTDYASIYSNLAQTTPTANPVIADADGFLASFYWTGTIDVVLTDENDNIIDSANGIQDLVSTINAVVVAGNISLPYGAASGSGDTITATLPITSDFSDGGVFVVRANAANTGASNTPNLQINSYASRRIK
Ga0119870_1082289Ga0119870_10822892F087089YMDNHLRTLNNAKMIEFIENKANRELIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVSGAQTYGRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHTVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKKNLAPSTIPVQDKK*
Ga0119870_1088690Ga0119870_10886902F081921MNLTPQTEPQEINLQERAVETPSDNSLPAAQVIDDQSNDAEFNSAPRFVP*
Ga0119870_1089556Ga0119870_10895561F074964MITKKNINKLQNAVIKENASNLVGAVNLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCADNVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0119870_1103097Ga0119870_11030972F045728MSLASVPRESSGQKERPLMAAQAAPAPAGDSLLVSRFLPTR
Ga0119870_1104147Ga0119870_11041472F102167MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKITESHNLTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK*
Ga0119870_1116032Ga0119870_11160323F075867HFLQYDAATFENEGFKTLNGRISQLALEPRFWSVSVKVITENFEGTEKIKDHFNFKTSERCKLSDLREQVKKEVLDKDDYLPVCTQCLVTARVMM*
Ga0119870_1131651Ga0119870_11316511F021533MKTIAATVINEVVTPIEPMPSNAKLILFNGTEYVIYEDGDELPIIE*
Ga0119870_1148832Ga0119870_11488321F097376VSPKKNKTATDVVVQKKQAKTGPVELDLAELKKVSGGLPKGGWERMK*
Ga0119870_1155448Ga0119870_11554481F097376MKKAVSPKKNKTASDVVEQKKQAKSGPVELDLADLKKVSGGLPKGGWSPAK*
Ga0119870_1162141Ga0119870_11621412F044576MENEQALEEALLVEDLHTGELVVERANGEKWVLDAKKGWCPWGYEFEGKRVGLRFGEVTSILVNDRGEQFEFWTDKQIE*
Ga0119870_1164773Ga0119870_11647731F093883MMEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDIIKNNINSI*
Ga0119870_1167233Ga0119870_11672331F068773MTTEKLNLSELGLGDNSQAAVNEKLPRRGAEGRGQGRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQE
Ga0119870_1181278Ga0119870_11812781F069722MRVRLTAELDPKAKRERPALKKGAAHEKALGHKSGAVLQK*
Ga0119870_1182857Ga0119870_11828571F085718MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMVEDDNANDYIILRYNETGRRNINGQSSLDLMLSVKLPELELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETA
Ga0119870_1222314Ga0119870_12223142F010914MIYNILVEKNGKFVATGETVECEFEETQAVIGELQLEHGCCCALEAVSE*
Ga0119870_1224705Ga0119870_12247051F027486ADALGVRIQLGEGRRNGRERVFWLDGYRQLTGYTTKSDGSPFRHEDAVRNIDKALTGIEDDRKIMAGLTIAERFARVLAEFREMKPQARMIGEVRLPGGDGGHCFFMADYEGGVHLHGFGQDVARGKAEWRHGETMAAQIGRFCDALEADFNAGAFASVVPRANHVDPHAENAE*
Ga0119870_1227327Ga0119870_12273271F045728MQLASAPRESSGQNERPSMAVQAAPAPAGGSLPGA

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