Basic Information | |
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IMG/M Taxon OID | 3300014833 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118577 | Gp0137209 | Ga0119870 |
Sample Name | Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - influent sewage |
Sequencing Status | Permanent Draft |
Sequencing Center | Tongji University |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 493408896 |
Sequencing Scaffolds | 28 |
Novel Protein Genes | 31 |
Associated Families | 29 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → Viruses → Predicted Viral | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 2 |
Not Available | 11 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Bingvirus → unclassified Bingvirus → Streptomyces phage ClubPenguin | 1 |
All Organisms → cellular organisms → Bacteria → Spirochaetes | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 28-67-8 | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Activated Sludge Microbial Communities From Shanghai, China |
Type | Engineered |
Taxonomy | Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | China: Quyang, Shanghai | |||||||
Coordinates | Lat. (o) | 31.3 | Long. (o) | 121.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003605 | Metagenome / Metatranscriptome | 477 | Y |
F010914 | Metagenome / Metatranscriptome | 297 | Y |
F021533 | Metagenome / Metatranscriptome | 218 | Y |
F027486 | Metagenome | 194 | Y |
F040068 | Metagenome / Metatranscriptome | 162 | N |
F044576 | Metagenome / Metatranscriptome | 154 | Y |
F045728 | Metagenome / Metatranscriptome | 152 | Y |
F050485 | Metagenome / Metatranscriptome | 145 | Y |
F054846 | Metagenome / Metatranscriptome | 139 | N |
F055725 | Metagenome / Metatranscriptome | 138 | Y |
F058934 | Metagenome / Metatranscriptome | 134 | N |
F060985 | Metagenome / Metatranscriptome | 132 | N |
F068773 | Metagenome / Metatranscriptome | 124 | N |
F069722 | Metagenome / Metatranscriptome | 123 | Y |
F071823 | Metagenome | 121 | Y |
F074867 | Metagenome / Metatranscriptome | 119 | N |
F074964 | Metagenome | 119 | N |
F075867 | Metagenome / Metatranscriptome | 118 | N |
F076005 | Metagenome / Metatranscriptome | 118 | N |
F080163 | Metagenome | 115 | N |
F081921 | Metagenome / Metatranscriptome | 114 | Y |
F082613 | Metagenome / Metatranscriptome | 113 | N |
F084812 | Metagenome / Metatranscriptome | 112 | Y |
F085718 | Metagenome | 111 | N |
F087089 | Metagenome / Metatranscriptome | 110 | N |
F090323 | Metagenome | 108 | N |
F093883 | Metagenome | 106 | N |
F097376 | Metagenome / Metatranscriptome | 104 | Y |
F102167 | Metagenome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0119870_1002633 | All Organisms → cellular organisms → Bacteria | 7480 | Open in IMG/M |
Ga0119870_1011253 | All Organisms → Viruses → Predicted Viral | 3426 | Open in IMG/M |
Ga0119870_1017543 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 2629 | Open in IMG/M |
Ga0119870_1020737 | Not Available | 2377 | Open in IMG/M |
Ga0119870_1026713 | All Organisms → cellular organisms → Bacteria | 2038 | Open in IMG/M |
Ga0119870_1033863 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Bingvirus → unclassified Bingvirus → Streptomyces phage ClubPenguin | 1761 | Open in IMG/M |
Ga0119870_1036983 | All Organisms → cellular organisms → Bacteria → Spirochaetes | 1666 | Open in IMG/M |
Ga0119870_1049815 | Not Available | 1376 | Open in IMG/M |
Ga0119870_1055264 | All Organisms → Viruses → Predicted Viral | 1287 | Open in IMG/M |
Ga0119870_1057998 | Not Available | 1248 | Open in IMG/M |
Ga0119870_1066280 | Not Available | 1146 | Open in IMG/M |
Ga0119870_1082289 | Not Available | 999 | Open in IMG/M |
Ga0119870_1088690 | Not Available | 953 | Open in IMG/M |
Ga0119870_1089556 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus | 947 | Open in IMG/M |
Ga0119870_1103097 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium | 866 | Open in IMG/M |
Ga0119870_1104147 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 860 | Open in IMG/M |
Ga0119870_1116032 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 804 | Open in IMG/M |
Ga0119870_1131651 | Not Available | 743 | Open in IMG/M |
Ga0119870_1148832 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 689 | Open in IMG/M |
Ga0119870_1155448 | Not Available | 670 | Open in IMG/M |
Ga0119870_1162141 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 653 | Open in IMG/M |
Ga0119870_1164773 | Not Available | 646 | Open in IMG/M |
Ga0119870_1167233 | Not Available | 641 | Open in IMG/M |
Ga0119870_1181278 | All Organisms → cellular organisms → Bacteria | 610 | Open in IMG/M |
Ga0119870_1182857 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 606 | Open in IMG/M |
Ga0119870_1222314 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 28-67-8 | 536 | Open in IMG/M |
Ga0119870_1224705 | Not Available | 532 | Open in IMG/M |
Ga0119870_1227327 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 528 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0119870_1002633 | Ga0119870_100263312 | F060985 | MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPGFKPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFGYWFPPYKKYIPHRIRVLRLALKDLERIKEEYGKD* |
Ga0119870_1011253 | Ga0119870_10112535 | F054846 | MTTENLNLSELGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL* |
Ga0119870_1017543 | Ga0119870_10175433 | F074867 | MSNRGIVELTLNGEVFELHPTFENLDKLETVLNKGAVGFLQNDLSSGMFKTGDVVSIIQVCAIPPRGAKRPSWWNREGIGRAVLNEGLLNCTRVVVEFLTKALTAGSETDIKTVGADEDDEKK* |
Ga0119870_1020737 | Ga0119870_10207373 | F050485 | MSLKEMAPRYQVGDRVSIDKSVTTMPALPAYVGVVQNVVPSYVDKTVGYNLALDGDPRPGRLWFFLQNQLTPA* |
Ga0119870_1026713 | Ga0119870_10267132 | F080163 | MKTIKFLQESFETKERFQQEISFKYSYNQNTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKSYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESEVLNSEIELLQEKLDLIREEICELIGVDPNLEKQGHEDNYIFNLNINSDNQIGFLLQATEL* |
Ga0119870_1033863 | Ga0119870_10338631 | F003605 | MAVGDAASAAGYATVPETGEEGRVRWGARELNRTRDYIAAVKALIPGTKTAYREAAGISSGTAHPTGGNDGDIY |
Ga0119870_1036983 | Ga0119870_10369835 | F084812 | MAKMSSLKLDNWSKGLLISIISKAISGDREMTPDDIEKLKEIKKLL |
Ga0119870_1039841 | Ga0119870_10398412 | F071823 | LVKNLPAIQETLVRFLGQEDPLEKGKATHSSILAWRIP* |
Ga0119870_1049815 | Ga0119870_10498152 | F040068 | MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQEIPPIINEQMAAWPDPRPIGQPVFVPSPDYQYFIFNYFIVSVQSRATTFDATATVGLNAPIASMDWYVDDVYVISGLVPTVTMSGGVHTISVLITDDYGNQQTFSFEYEQGVDLSFNFITGEYFYFIDGVKFDFIG* |
Ga0119870_1049815 | Ga0119870_10498153 | F082613 | LNQQTVTVAGPNTTTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG* |
Ga0119870_1055264 | Ga0119870_10552642 | F090323 | AINELNANFERLFNNQQAAPTPTQLPTQAQEVPTQAQEVPTQAQEVATQAQEVALLPDVAKTMNRTREDLQAMCLAATKRNAANRDIIKAIMLSNFEARKTGDLADNQVDMCYAMIAEATQDD* |
Ga0119870_1057998 | Ga0119870_10579982 | F076005 | MTGEIMKHFKIKVQYLNGNEFCFECDAKTNWQAAALARIKGKELGLGGAMDVKETIVEEA |
Ga0119870_1066280 | Ga0119870_10662802 | F055725 | MAFFNGEGIDLPTITKLAEAGVSLNGMATITGHSRTGIKRALERNKIPFATHVRERFVVVDGVLTSLGDACNAQGFSRKAMYAWRVKRGLNEQEGFDAYIVYQQSKRTIDKPILTFKNATVIYKKERYTLTEISDKLKLNKQRFEVFMRQNRYAQNAFERYCYMRGL* |
Ga0119870_1082289 | Ga0119870_10822891 | F058934 | MRQFSYPNSQFTNILGGASIGWKLNVYDTGTTDYASIYSNLAQTTPTANPVIADADGFLASFYWTGTIDVVLTDENDNIIDSANGIQDLVSTINAVVVAGNISLPYGAASGSGDTITATLPITSDFSDGGVFVVRANAANTGASNTPNLQINSYASRRIK |
Ga0119870_1082289 | Ga0119870_10822892 | F087089 | YMDNHLRTLNNAKMIEFIENKANRELIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVSGAQTYGRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHTVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKKNLAPSTIPVQDKK* |
Ga0119870_1088690 | Ga0119870_10886902 | F081921 | MNLTPQTEPQEINLQERAVETPSDNSLPAAQVIDDQSNDAEFNSAPRFVP* |
Ga0119870_1089556 | Ga0119870_10895561 | F074964 | MITKKNINKLQNAVIKENASNLVGAVNLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCADNVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ* |
Ga0119870_1103097 | Ga0119870_11030972 | F045728 | MSLASVPRESSGQKERPLMAAQAAPAPAGDSLLVSRFLPTR |
Ga0119870_1104147 | Ga0119870_11041472 | F102167 | MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKITESHNLTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK* |
Ga0119870_1116032 | Ga0119870_11160323 | F075867 | HFLQYDAATFENEGFKTLNGRISQLALEPRFWSVSVKVITENFEGTEKIKDHFNFKTSERCKLSDLREQVKKEVLDKDDYLPVCTQCLVTARVMM* |
Ga0119870_1131651 | Ga0119870_11316511 | F021533 | MKTIAATVINEVVTPIEPMPSNAKLILFNGTEYVIYEDGDELPIIE* |
Ga0119870_1148832 | Ga0119870_11488321 | F097376 | VSPKKNKTATDVVVQKKQAKTGPVELDLAELKKVSGGLPKGGWERMK* |
Ga0119870_1155448 | Ga0119870_11554481 | F097376 | MKKAVSPKKNKTASDVVEQKKQAKSGPVELDLADLKKVSGGLPKGGWSPAK* |
Ga0119870_1162141 | Ga0119870_11621412 | F044576 | MENEQALEEALLVEDLHTGELVVERANGEKWVLDAKKGWCPWGYEFEGKRVGLRFGEVTSILVNDRGEQFEFWTDKQIE* |
Ga0119870_1164773 | Ga0119870_11647731 | F093883 | MMEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDIIKNNINSI* |
Ga0119870_1167233 | Ga0119870_11672331 | F068773 | MTTEKLNLSELGLGDNSQAAVNEKLPRRGAEGRGQGRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQE |
Ga0119870_1181278 | Ga0119870_11812781 | F069722 | MRVRLTAELDPKAKRERPALKKGAAHEKALGHKSGAVLQK* |
Ga0119870_1182857 | Ga0119870_11828571 | F085718 | MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMVEDDNANDYIILRYNETGRRNINGQSSLDLMLSVKLPELELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETA |
Ga0119870_1222314 | Ga0119870_12223142 | F010914 | MIYNILVEKNGKFVATGETVECEFEETQAVIGELQLEHGCCCALEAVSE* |
Ga0119870_1224705 | Ga0119870_12247051 | F027486 | ADALGVRIQLGEGRRNGRERVFWLDGYRQLTGYTTKSDGSPFRHEDAVRNIDKALTGIEDDRKIMAGLTIAERFARVLAEFREMKPQARMIGEVRLPGGDGGHCFFMADYEGGVHLHGFGQDVARGKAEWRHGETMAAQIGRFCDALEADFNAGAFASVVPRANHVDPHAENAE* |
Ga0119870_1227327 | Ga0119870_12273271 | F045728 | MQLASAPRESSGQNERPSMAVQAAPAPAGGSLPGA |
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