NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F071823

Metagenome Family F071823

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F071823
Family Type Metagenome
Number of Sequences 121
Average Sequence Length 41 residues
Representative Sequence VAQLVKNLPAMWETWVRSLGWEDPLEKGTATHSSILAWRIP
Number of Associated Samples 10
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 0.83 %
% of genes from short scaffolds (< 2000 bps) 0.83 %
Associated GOLD sequencing projects 9
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.174 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment
(90.909 % of family members)
Environment Ontology (ENVO) Unclassified
(90.909 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Sediment (saline)
(90.909 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.83%    β-sheet: 0.00%    Coil/Unstructured: 52.17%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF00078RVT_1 0.83
PF01965DJ-1_PfpI 0.83
PF00528BPD_transp_1 0.83



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.17 %
All OrganismsrootAll Organisms0.83 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300016461|Ga0126362_10400635All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla541Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Continental Margin SedimentEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment90.91%
Food WasteEngineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste3.31%
Goat FecesHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces1.65%
Cattle And Sheep RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen0.83%
Sheep RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen0.83%
Activated SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge0.83%
Anaerobic Digester DigestateEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate0.83%
Food WasteEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Food Waste0.83%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300012007Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1009Host-AssociatedOpen in IMG/M
3300014833Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - influent sewageEngineeredOpen in IMG/M
3300016461Continental margin sediment microbial communities from China - ANME2c_DSS_Sorted metaGEnvironmentalOpen in IMG/M
3300018493Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3Host-AssociatedOpen in IMG/M
3300020818Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed2EngineeredOpen in IMG/M
3300021426Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021982Food waste microbial community from Durham, Ontario, Canada - FW1 spadesEngineeredOpen in IMG/M
3300023280Combined Assembly of Gp0238881, Gp0242115EngineeredOpen in IMG/M
3300023291Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada. Combined Assembly of Gp0242115, Gp0242119EngineeredOpen in IMG/M
3300029799Metagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119EngineeredOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0120382_106156923300012007Sheep RumenVVKNQPAMPETQEVQVGSLGQEDPLEEDIATHSSILAWRIPIDRAA*
Ga0119870_103984123300014833Activated SludgeLVKNLPAIQETLVRFLGQEDPLEKGKATHSSILAWRIP*
Ga0126362_1000981423300016461Continental Margin SedimentMAQIVKNLPAIQETRIRTLGGEDPPEKGMATLSSILAWRIP
Ga0126362_1001528333300016461Continental Margin SedimentMAQLVKNLPAMQETHVRFLGCEDPLEKEMATHSSILAWRIPWT
Ga0126362_1002747713300016461Continental Margin SedimentLVKNLLAMWETWVQPLHWEDPLEKGTSSHSSILAWRIPWTV
Ga0126362_1002844113300016461Continental Margin SedimentLALKGSLVAQLVKNPPAMQETWVRSLGWEGLLEKGKAPHSSI
Ga0126362_1003233033300016461Continental Margin SedimentVAQTVKNLPAMQETRVQSLGWEDLLENGMATHSSILAWTDEPG
Ga0126362_1004916523300016461Continental Margin SedimentSFVAQLVKNPPAMQETWVQSLGWKDPLEKGTATHSSILAWRIPWTV
Ga0126362_1004933413300016461Continental Margin SedimentAQLVKNPPAMQETWVRSLGWEDPLEKGKAIHFNILGWIIPWTV
Ga0126362_1005409043300016461Continental Margin SedimentAQLVKNLPAMWETWVQSLGWENALEKGKATHSNILA
Ga0126362_1005418623300016461Continental Margin SedimentSLMAQIVKNLPAMKDTRVQSLGWEDSLEKGMATHSIILA
Ga0126362_1005491813300016461Continental Margin SedimentVAQLVKNLPAVRETWVLLLGWEDALEKIKATHSSILAWRIPWTV
Ga0126362_1005682813300016461Continental Margin SedimentMVKNLPAVQETWVRSLGQKDPLEEVMATHCSIFAW
Ga0126362_1006151623300016461Continental Margin SedimentVAQLVKNPPAMRETWVRSLGWEKPLEKGKATHSSVLAWRNPWTVQSMR
Ga0126362_1006435923300016461Continental Margin SedimentVAQLVKNLPAMWETWVRSLGWEDPLEKGTATHSSILAWRIP
Ga0126362_1006579613300016461Continental Margin SedimentMVKWLPAMRETRVRFLGQEDPLEKEMAIHSSTLAWKIPW
Ga0126362_1006669013300016461Continental Margin SedimentQVALVVKNPPAMQEMWVRSLGREDPLEEEMATHSSILAWRIP
Ga0126362_1006848523300016461Continental Margin SedimentASLVAQLVKNPPAMRETWVRSLDWDDPLEKGKATHSSILAWRIH
Ga0126362_1008179613300016461Continental Margin SedimentVAQSVKSLPTIWEIWVRSVGWEDPLEKEMATHSSILAWRNPWTEEP
Ga0126362_1008183413300016461Continental Margin SedimentVAQLVKNPPAMRETWVRSLGWEDPLEKGKATHSSILAW
Ga0126362_1008458613300016461Continental Margin SedimentGKNPPAMQEAWVGSLSREDLLETRMATHSSILAWRIP
Ga0126362_1008503613300016461Continental Margin SedimentMAQMVKNLPAMQETWVQSLGWEDPLGKGMTIHSSI
Ga0126362_1008743213300016461Continental Margin SedimentMVENLPGIQETQAASLDEDPLEKGMATHSSILAWRIP
Ga0126362_1009878613300016461Continental Margin SedimentMVKNLPAVQETQVQSLGKEDHLEKAMATYSRILSWKIPWTE
Ga0126362_1010210013300016461Continental Margin SedimentVAQLVKNLPAMQGIWVPSLGWEDPLEKGKATHSSILA
Ga0126362_1011090223300016461Continental Margin SedimentVVKIPPAMQEAWVRSLGWEDPLEKEMATHSSILAW
Ga0126362_1011915013300016461Continental Margin SedimentRAQLVKNLPAMKETPVQFLGRDDTLEKGKATHSSILAWGTPWTV
Ga0126362_1012215413300016461Continental Margin SedimentKNLLAVLETQVQSLGWEDPLEKGIATHSSILAWRIPWTEETSWL
Ga0126362_1012330223300016461Continental Margin SedimentAQLVKNPPAMSETWVRSLGWEGPLEKGKATLSSILAWRIPWTV
Ga0126362_1012336413300016461Continental Margin SedimentVAKLVKNPPAMRETWVRSLDWEDPLEKGKATHSSIL
Ga0126362_1012844923300016461Continental Margin SedimentMVKNLPETWETWVQSLGQEDPLEKGMATHSSVLAWEIPWTKEPGSV
Ga0126362_1013366123300016461Continental Margin SedimentYSWASLVAQLVKNSPALQETWVQSLGWKDPLEKGKATHSGILAWRIP
Ga0126362_1013854813300016461Continental Margin SedimentTVKNLPAMQESWVQSLGREDPLEKGMATHSSILTWRIP
Ga0126362_1014592413300016461Continental Margin SedimentVAQLVKNPAVQEIWVHSLGWEDPLEKGKATHSSILAWRIPWTIPWG
Ga0126362_1014804313300016461Continental Margin SedimentMTQMMKNPPAMQETLAPSLGWEDPLEKGMSTCSSVLAWRI
Ga0126362_1015102513300016461Continental Margin SedimentVAQTVKNLLAMQEAWVRSLGQKDPPEKEMATHFSILAWSS
Ga0126362_1017195413300016461Continental Margin SedimentVAQTVKNLPAMQETWVQSLGQEDPLEKGTATHSSILA
Ga0126362_1017354813300016461Continental Margin SedimentRRKEIVAQQVKNLPAMWETWVRSLGWEHPLVKGKATHSSILA
Ga0126362_1017833213300016461Continental Margin SedimentKNLPAMGEIWVRSLGWEDPLEKRMATHSSILAWKVPWTV
Ga0126362_1017866613300016461Continental Margin SedimentVAQLVKNPPAMRETWVRSLGWEDPLEKRKATRSSILAWRIPWAV
Ga0126362_1018192113300016461Continental Margin SedimentAQLVKNLPAMWETWVRSLDWEEPLEEGKATHSSSLAWRIP
Ga0126362_1018204513300016461Continental Margin SedimentMVNNLPAVRETWVQSLCWEDPLEKGIATHSSILAWRIPWTEE
Ga0126362_1018726413300016461Continental Margin SedimentMGASIVAQTVKNQPAMWETWVRPLGWEDPLEKEMATHSS
Ga0126362_1018986523300016461Continental Margin SedimentMAQLLKNPPAMWETWVQSLGWEDPLEKGKATHSSILAWRIPWTV
Ga0126362_1019092923300016461Continental Margin SedimentMAQSVKNLPAMQVNWVQSLGQEDPLEKGMTTHSSILAWRIP
Ga0126362_1019779513300016461Continental Margin SedimentLVKNLPAMRETWVRSLGWEDPLEKGKATHSSILAWRIPWTV
Ga0126362_1019838113300016461Continental Margin SedimentVIKNPPAMQETWALSLGQEDPLEKEMATHCSILAREIP
Ga0126362_1020760813300016461Continental Margin SedimentMQGTRLPAAQENWVQSLGQEDPLEKEMATHSSILAWKIPC
Ga0126362_1022055413300016461Continental Margin SedimentMAQLVKNPPAVWETWVRSLGWDDPLEKGAATHCSILA
Ga0126362_1022245913300016461Continental Margin SedimentMLFFKWASLVAKLVKNLAAMWQTWVQSLGWEDPLEKAATTHSSILTWRIP
Ga0126362_1023450523300016461Continental Margin SedimentMVKNLPAIQETWIPSLGREDPLEEEMATHSSILAWKKSPS
Ga0126362_1023505413300016461Continental Margin SedimentMVKILPAMQKTWVQPLGQEDPLEKRMAAHSSILAW
Ga0126362_1023599713300016461Continental Margin SedimentMAQLVKNLPAMWETWEPSLGWEDPLEKETATHSSILAWKIP
Ga0126362_1024348823300016461Continental Margin SedimentMYPSLMAQLVKNPPAMQETWVPSLGWEETLEKGKATHSSILA
Ga0126362_1024539113300016461Continental Margin SedimentMVAQLVKNLPAVRETWVRSLGWDEPLEEGMVTHSSILA
Ga0126362_1024797313300016461Continental Margin SedimentMEKNLPVTQEVQETKLRSLGWEDPLEKGMASHSSILAWR
Ga0126362_1025859123300016461Continental Margin SedimentVAQLVKNLPAMQETWVQSLGWEDPLEKGKTTHSSILAWRIP
Ga0126362_1026635913300016461Continental Margin SedimentMAQLVENPPAVWETWVQSLGWEDPLEKGKATHSSI
Ga0126362_1026701333300016461Continental Margin SedimentVAQIVKNLPAVQETQVQSLGQEDSLEKGVATHFSTLAWRIL
Ga0126362_1027162823300016461Continental Margin SedimentVGYMVKKLAAMWETEVKYLDQEDPLEEGMATHSSILAWRIP
Ga0126362_1028420113300016461Continental Margin SedimentMTRGFPGGSAVKNLPALQKLQEMQVQILGQEDALEEGIATHSSILVWRNP
Ga0126362_1028449313300016461Continental Margin SedimentVVKNLPAMQEIQVQSLGWEDPLEKGMATHSSILAWLPSLS
Ga0126362_1028786013300016461Continental Margin SedimentLVKNPPATQEIRVLSPGQEDPLEKEMATHSSVLAR
Ga0126362_1028917623300016461Continental Margin SedimentGEVAELVKNPPAMRETWVRSLGWEDPLEKGKATHSSILAWRIPWTI
Ga0126362_1029548213300016461Continental Margin SedimentLVTQLVKNLPAMWETWVRSLGWEDPLEKGKATHSGILAWTIPWTL
Ga0126362_1029794923300016461Continental Margin SedimentLPAIQETRVQFLGQEDPLEKEMAIPSSILAWRTPWTEILF
Ga0126362_1029834013300016461Continental Margin SedimentMSFPGGSDHKNLAAMQETRVQSLGREDPLEKGMATHSSILAWRIP
Ga0126362_1030199213300016461Continental Margin SedimentVAQLVKNMPVMWETWVQSLGWEDPLEKGKATHSSILAWRIPWTV
Ga0126362_1030350923300016461Continental Margin SedimentVVKNQPAMQETQVQSLGWEDPLEKGMTTHFFILAWRIPMT
Ga0126362_1031173323300016461Continental Margin SedimentMVKNLPAMQETWVQSLGQEDALEKGMATHSSILAWR
Ga0126362_1031285813300016461Continental Margin SedimentAQLVKNLPAMWETWVPSLGWEDALEKGKATHLSILAWRIPWTV
Ga0126362_1032537613300016461Continental Margin SedimentVVIFLPAMQETWVQSLGQEDPLEESIATHSSILAWKIPMDQVAWQAI
Ga0126362_1033388113300016461Continental Margin SedimentMVKNTPAVQETWVRSLGQKDPLEKGMAIHSSILAWRIPWTEEP
Ga0126362_1034066933300016461Continental Margin SedimentMGVSLVAQLVKNPPAMRETWVRSLGWEDLLEKGTATHSHTLAWRIP
Ga0126362_1034431313300016461Continental Margin SedimentMVKNLPAMQETWVQSLGQEDPLENKMATHSNILAWELPW
Ga0126362_1034473413300016461Continental Margin SedimentLAQLVKNQPAKQETWVRSLGWEDSLEKGKATHSSILA
Ga0126362_1034865613300016461Continental Margin SedimentMVKNLPAVRETWVRSLGWEDPLEEGMTAHSSILAWRIPMD
Ga0126362_1035517613300016461Continental Margin SedimentVVKNLPAMQETQTLRVQSLGQEDPLEKEMVTHSSILAWEIP
Ga0126362_1035518413300016461Continental Margin SedimentGSVVKNLPAVQETWVRSLGWEDPLEKGMATHSSILA
Ga0126362_1035649023300016461Continental Margin SedimentMAQTVKNLPAMQGACVQSLGGEDPLEKGMAAHPSILAWR
Ga0126362_1036940423300016461Continental Margin SedimentGRSLVVQLVKNLPAMWGTWIQALGWEDPLEKGKTTHSRILA
Ga0126362_1036983013300016461Continental Margin SedimentNLPAMWETWVRSLGWEDPLEKGTATHTSILAWRIPWTV
Ga0126362_1037015813300016461Continental Margin SedimentMVKNLPAMQETHFQSLGQEDPLEKGMATHSSILAWRIPWAEK
Ga0126362_1037304213300016461Continental Margin SedimentGRELIKNLPAVREPWVRSLGWEDPLEKGKATPSSVLA
Ga0126362_1037661313300016461Continental Margin SedimentITQLVKNTPAMRETWVQSLGWEDPLDKGKATHSSILAWRIP
Ga0126362_1038094813300016461Continental Margin SedimentAQLVKNPPAMQETWVQSLGWEDPLEKGTATHSNILAWRIP
Ga0126362_1038241313300016461Continental Margin SedimentLVAQLVKNPPAMWETWVQSLGWEDPLEKGKTTHSSILAWRIPWTV
Ga0126362_1038257123300016461Continental Margin SedimentVAKNPSARLETQETWVTSLGQGDPLEERMATHSSILARRIPRTEESDRL
Ga0126362_1038383013300016461Continental Margin SedimentVASLVAQLVKNPPAIQETWVPSLGWEDPLEKGKATHSSLLAWRIPWTI
Ga0126362_1039509223300016461Continental Margin SedimentMVKNLPAVEEIRVQSLGQEDPVEEAMATHSSILAWRIPWTEEPVRK
Ga0126362_1039677013300016461Continental Margin SedimentMVKNLPAIQETCVRSLGREDPLEKGMVHSSILAWRI
Ga0126362_1039827813300016461Continental Margin SedimentVAQMVKNLAAMQGTWVRSLARENTLEKGMATHSSILAWRI
Ga0126362_1040063513300016461Continental Margin SedimentVIKNPHAMQETWVRSLGQEDPLEKEMATHSSVLAWEIPWI
Ga0126362_1040436323300016461Continental Margin SedimentMVKNLPAIQEAQVQSLGQEDPLEKEMVTCSSILTWKIPWKEEPGK
Ga0126362_1041158213300016461Continental Margin SedimentSLVAQLVKNPPAMRETWVRSLGWEDPLEKGKATHSSILAWRIPWTV
Ga0126362_1041897913300016461Continental Margin SedimentVAQQVKNLPAVQETLVQFLGLEDPLEKGKATHSSILAWRI
Ga0126362_1041913113300016461Continental Margin SedimentVAQMVKNLPVIQETRVQSLGREDPLEKEMATHSSIPAWRIPWTEEP
Ga0126362_1042328913300016461Continental Margin SedimentVMGKNPPAMWETCVRYLGWEDPLGKGKATHSSILAWRIAW
Ga0126362_1042990613300016461Continental Margin SedimentNPPAIRETWVLSLGWEDLLEEGMVTHSSILAWRILEDRGA
Ga0126362_1043291913300016461Continental Margin SedimentVAQTVKNLPAMQENWVRSLGQKDPLEKGMANHSSILA
Ga0126362_1043529013300016461Continental Margin SedimentGVLGGSDDKNLPAMQENRVQSLGWEDPLEKGMVTHSSILA
Ga0126362_1043998213300016461Continental Margin SedimentPAMQETWVQSLGWEDPLEKGKTTHSSILARRIPWPV
Ga0126362_1044131323300016461Continental Margin SedimentMAQLVKNLPAIWETWVPSLGWEEPLEKGRATDASIL
Ga0126362_1044640713300016461Continental Margin SedimentVAQLVKNPPTMWGTWVQYLGREDPLEKGKDMHSSILAWRI
Ga0126362_1044908213300016461Continental Margin SedimentMVKNLPAMQETWVQSLGQEDPLEKGMAIHSRILTWRIP
Ga0126362_1045126113300016461Continental Margin SedimentVKNLPAMQKMWVPSLGQEDPLEEGIATHSSILAWRIPMDREAWWVTAH
Ga0126362_1045454023300016461Continental Margin SedimentVAQLVKNPLAMWGTWVQSLGWEDSLEKGKATHSSILAWRILW
Ga0126362_1045768813300016461Continental Margin SedimentVAQLVKNPPAMRETGVRSQGSEDPLEKGKATHSSILAWRIPG
Ga0126362_1046231713300016461Continental Margin SedimentGGEENLPAVQETLVQFLGWEDPLEKGKATHSSILVWRIP
Ga0126362_1046418413300016461Continental Margin SedimentVAQLVQNLPAMWETWVRSLGWEDPLEKGTATHSSILTS
Ga0126362_1047453313300016461Continental Margin SedimentVVKNLPVIQQRCIQSLGQEDPLEKDMATHSSILAWKIPK
Ga0126362_1047611913300016461Continental Margin SedimentGMIKHPPAMRETWVRSLCWEDPLEKGKATHSSILA
Ga0187909_1136603823300018493Goat FecesQLVKKLPAMWETWGPSLGWEEPLEQGTATYSRILPWRIPWTV
Ga0187909_1161696013300018493Goat FecesQLAKNLPAMWETWVQYLGWVDPLEKGKATHSSMGSQRVGH
Ga0214277_1130950013300020818Food WasteSLVAQMVKNPPAMWENWVRSLGWKDPIEKEMATHSSVLA
Ga0224482_1120979113300021426Cattle And Sheep RumenVLKNQPAMPETQEVQVGSLGQEDPLEEDIATHSSILAWRIPIDRAA
Ga0226661_1079040613300021982Food WasteLRASLVAQLVKNPPAMKETWVRSLGWEDPPEKGKATQSSILAKKI
Ga0255813_1137887713300023280Food WasteVALEVKNPPAMQETWVPSPGQEDALAEGMATHSSILAW
Ga0256703_1091878913300023291Food WasteVSQLVKNPPATWDPPLGWEDPLEKGKATHSSILAWRVPW
Ga0256703_1092265113300023291Food WasteARLVKNQPAMWETGARSLGWEDPLENGKATHSSILTWRIPWTV
Ga0311022_1347796313300029799Anaerobic Digester DigestateLVKNLPAVQETQVQSLGQKDPLEKGMATHSDILAWRIP


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