3300009296: Microbial communities from groundwater in Rifle, Colorado, USA-3A_0.2um

Overview

Basic Information

• IMG/M Taxon OID: 3300009296
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117958 | Gp0126270 | Ga0103681
• Sample Name: Microbial communities from groundwater in Rifle, Colorado, USA-3A_0.2um
• Sequencing Status: Permanent Draft
• Sequencing Center: Lawrence Berkeley National Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 642458765
• Sequencing Scaffolds: 42
• Novel Protein Genes: 43
• Associated Families: 40

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	11
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium GWC2_53_11	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Groundwater In Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater → Microbial Communities From Groundwater In Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, CO, USA
• Coordinates
  • Lat. (^o): 39.32
  • Long. (^o): -107.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007341	Metagenome / Metatranscriptome	353	Y
F008177	Metagenome / Metatranscriptome	337	Y
F009862	Metagenome / Metatranscriptome	312	Y
F010209	Metagenome / Metatranscriptome	307	Y
F017852	Metagenome / Metatranscriptome	238	Y
F020727	Metagenome / Metatranscriptome	222	Y
F022119	Metagenome / Metatranscriptome	216	Y
F023250	Metagenome / Metatranscriptome	211	N
F023933	Metagenome / Metatranscriptome	208	Y
F026037	Metagenome / Metatranscriptome	199	Y
F027235	Metagenome / Metatranscriptome	195	Y
F028610	Metagenome / Metatranscriptome	191	Y
F030144	Metagenome / Metatranscriptome	186	Y
F030158	Metagenome / Metatranscriptome	186	Y
F035129	Metagenome / Metatranscriptome	173	Y
F041503	Metagenome / Metatranscriptome	160	Y
F043272	Metagenome / Metatranscriptome	156	Y
F043514	Metagenome / Metatranscriptome	156	Y
F045206	Metagenome / Metatranscriptome	153	Y
F045635	Metagenome / Metatranscriptome	152	Y
F047545	Metagenome / Metatranscriptome	149	Y
F050246	Metagenome / Metatranscriptome	145	Y
F055518	Metagenome / Metatranscriptome	138	Y
F056321	Metagenome / Metatranscriptome	137	N
F056711	Metagenome / Metatranscriptome	137	Y
F058725	Metagenome / Metatranscriptome	134	N
F061534	Metagenome / Metatranscriptome	131	N
F065251	Metagenome / Metatranscriptome	128	Y
F065699	Metagenome / Metatranscriptome	127	Y
F069483	Metagenome / Metatranscriptome	124	Y
F069627	Metagenome / Metatranscriptome	123	Y
F070677	Metagenome / Metatranscriptome	123	Y
F076985	Metagenome / Metatranscriptome	117	Y
F085179	Metagenome / Metatranscriptome	111	Y
F090690	Metagenome / Metatranscriptome	108	Y
F097616	Metagenome / Metatranscriptome	104	Y
F097998	Metagenome / Metatranscriptome	104	Y
F102896	Metagenome / Metatranscriptome	101	Y
F103517	Metagenome / Metatranscriptome	101	Y
F104327	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103681_1000743	All Organisms → cellular organisms → Bacteria	25254
Ga0103681_1001728	All Organisms → cellular organisms → Bacteria	15435
Ga0103681_1003765	All Organisms → cellular organisms → Archaea	9770
Ga0103681_1008494	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6059
Ga0103681_1008796	All Organisms → cellular organisms → Archaea	5942
Ga0103681_1011770	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5050
Ga0103681_1012428	All Organisms → cellular organisms → Bacteria	4901
Ga0103681_1016627	All Organisms → cellular organisms → Bacteria	4177
Ga0103681_1016867	Not Available	4144
Ga0103681_1017293	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4083
Ga0103681_1018866	All Organisms → cellular organisms → Bacteria → Proteobacteria	3884
Ga0103681_1023527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	3425
Ga0103681_1025929	All Organisms → cellular organisms → Bacteria	3238
Ga0103681_1026355	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3208
Ga0103681_1029823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium GWC2_53_11	2985
Ga0103681_1038274	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2569
Ga0103681_1039292	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	2527
Ga0103681_1042908	Not Available	2394
Ga0103681_1045353	All Organisms → cellular organisms → Bacteria	2313
Ga0103681_1047539	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	2245
Ga0103681_1057901	All Organisms → cellular organisms → Archaea	1982
Ga0103681_1063272	Not Available	1871
Ga0103681_1069232	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1763
Ga0103681_1076330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1650
Ga0103681_1084164	All Organisms → cellular organisms → Bacteria	1545
Ga0103681_1100262	All Organisms → cellular organisms → Bacteria	1365
Ga0103681_1130056	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1130
Ga0103681_1145172	All Organisms → cellular organisms → Bacteria	1040
Ga0103681_1153590	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	995
Ga0103681_1155917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	984
Ga0103681_1166473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	936
Ga0103681_1172618	All Organisms → cellular organisms → Bacteria	909
Ga0103681_1191761	All Organisms → cellular organisms → Bacteria → Terrabacteria group	836
Ga0103681_1192284	Not Available	834
Ga0103681_1194070	All Organisms → cellular organisms → Bacteria	828
Ga0103681_1210596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774
Ga0103681_1215565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	759
Ga0103681_1217189	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	755
Ga0103681_1258797	Not Available	652
Ga0103681_1281126	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria	606
Ga0103681_1294684	Not Available	581
Ga0103681_1334175	All Organisms → cellular organisms → Bacteria → Acidobacteria	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103681_1000743	Ga0103681_100074314	F009862	MSKQKNEKPMMVRCPNCKQLREPDFNETTRRYVCPLCAAPVDAQVLIERKKRGLK*
Ga0103681_1001728	Ga0103681_100172819	F041503	MKRAGLAALLALGAMGPVPAPAGEAATSRRAYYLFLAGAPQGCEDCYVPLIIARQPLEDVATSGRDTTIVLITTYERDSIWKVERGVSLAAADVSPAERIVRLRGRRYRYQEIAPAEVLRLLEKPEGTVPIHRMMPTPEKTSLEDLLAAFRHHRPR*
Ga0103681_1003765	Ga0103681_10037651	F070677	MMNLIKRAASRLALVLALTASAGCESIALVGRPTLELGQDEFVAEVERLDTSSREIHLRPNDSRTRVVGYTADARAVFRGREYPVTQLEAGDIVAMQLKQDSRGNSYTDLIRVQESIRDRDQSRGDIARPGTGIQTVDGRVEQVDFQ
Ga0103681_1008494	Ga0103681_10084943	F069483	VRLAFESPGDRDGKRVARPERIRTASEIPIEVDLTDEDTIPIYMRISDKVLHLRRLGMTYTNIARPLGINPWMAKKAARWGNIQKG*
Ga0103681_1008796	Ga0103681_10087963	F017852	MNNEKMKKLTLELPDKLGGLEKKHGIKRIGVWTVIPEHLLVWVYEAPTSEALQKFSMEPEMVKWMAWNTSEIKLAMSLEESMKLLK*
Ga0103681_1011770	Ga0103681_10117705	F056711	MRKAFTVLAAAAFALSIVAGGCAKDKSPSQLQAGKKGIAGTEKKAAPKPRAKLFTGTIEDLDEAAGTLTLKGPKGEMSFQARKKVKEQLGELEIGDKVIVKHDGKTALSIVKPRTSKTALAWYRNEETETVREEFH*
Ga0103681_1012428	Ga0103681_10124286	F097616	MNAPLLVSLLPPEWPAGSEAAVSASAPFVAILLLAGLLLSLVLRHPGR*
Ga0103681_1016627	Ga0103681_10166273	F023933	MSKQASFSSTQGLLSVRVPKKLGGKKVVLVEAEEYAKMKRRLAEIEDTLEKVARGEAAYRQGRTKTVKSLSELGR*
Ga0103681_1016867	Ga0103681_10168675	F030144	MFQLKTEEMTGYPKQAQEGPGGESVPAFFPKAPLDDNIPALIHFSSTPLFRLEKNSEKYAHLLKKKDQENIVPIVNYFISKSGYVAYLGGDVVKNLYIHGKRRYKAINILAILTSSDVDKYSSIMNNIISSNDGEFSLGFKYRVRKNRGEGCFKDVALARYFIEPRLEGPEKLLFPFRPATVELDLTTQNRFSDFFGIEAA*
Ga0103681_1017293	Ga0103681_10172932	F010209	MKLRKQIIVLFLALMLVPVFALAQEKKGTVSGYDTGSRMLTIKGKDWEQKAKVSSGVAKEKADLLKEGSKVTVEFDDRGGGDVRVKALSPR*
Ga0103681_1018866	Ga0103681_10188665	F056321	MPHVETPATPAIIYVHMEFYRGIKAIATFLGVHERTAQAFLYDGKIPGKKDGIGTWVLTNLDYFTSLQR*
Ga0103681_1023527	Ga0103681_10235271	F104327	VPKAEFATYAATLTDALLEEQSAIEAYVRIRNVSDILDQALGRIKDRAIRSMQGTAADICGAQVQLKSLPKKYEYQDSVIDDLESQKKIIEEKLKARKKFLENLPADVADTNTGEIIHPARFVSGGSTLQVTF*
Ga0103681_1025929	Ga0103681_10259293	F027235	MDSYVVRIYRRAGRKSRILIGTAEVAGAEKRLGFSNIEELWEILGRRKGRDLCAPASPLRRLRKEVTSATVGTDLEESAEGDRQIKLT*
Ga0103681_1026355	Ga0103681_10263551	F022119	MKCPACGQMLKRIEGVCGEYIGINPECLENKKARVQAHAEFYGLTQAEIYANYRIALAKK
Ga0103681_1029823	Ga0103681_10298231	F069627	VDLTDEDAIPIYMRISDKVLHLRRLGVPYASIADRLGVNLWMAKRAARWGNIRQA*
Ga0103681_1038274	Ga0103681_10382743	F085179	MRILNSKRKKAKSSREIAIFLLLTYFAMGAGLVDSSVLCIGEDGHLAIESAASCAFCASRVLLPVPPESLIPEGSTASGCGPCQDFSIASGREFPGIALPSPPGSVRSDFSLPSMEPAEGSRTMIAFASSVSGPLELPDPIALHARTVVLLI*
Ga0103681_1039292	Ga0103681_10392921	F030158	MNRLRNRLIAAFLASTILPLAATVWITTSLLDRSLGYATTGELDRLSRTLEATVKQFYQRERDALKQDALAGRTAPTTHAIAD
Ga0103681_1042908	Ga0103681_10429083	F104327	MKPTTQPGDEFFPDTMELGPIKSEQLTVLQRVVPKAEFTTYAATLTDALLEEQSAIEAYVRIRNVSDILEQALGRIKDRAINSMHGTSEDICGAKVVLKSLPKRYEYQDGTIDDLESQKKAIEEKLKARKKFLENLPADVADTATGEIIHPARFVSGGSTLQVTF*
Ga0103681_1045353	Ga0103681_10453533	F035129	MLGGEKNMKKVFVCLFICAMSSTGFAAALSESIAIEFQEHGKFTGIIGKAYVTEKAVEVVTFVEQNGVVIPFAFIDTILEKESKTEGVYNVKCRNQLGVLSTGTIDLHDRLNPKIILTTDKGITVTNISNVGRKMKKEFMPKVDLGK*
Ga0103681_1047539	Ga0103681_10475394	F103517	MNKREVLDITADMMKKMVSYDEVETVTQRSVMRGMENGTKLMLEEKERVNKLINDILSSLDYRNVLNKITEDTFDAFVFRYFKNVKYLADLEADDIELPDMVPENSFSVWAAVMLIDIDCL*
Ga0103681_1054736	Ga0103681_10547361	F102896	MMVKAKIGFIGSSAPSSPHLNSFRAFIPKDVDITFVQEVNPGALLWDAQGKLDLLIRQTNDLIERHEWNGVIISGGPKEVLNPGMWERLFSEVKVPVATALRSSVAALKVFAAARILLMTPVDDKLKNLYRDYLAGFGIEAVYPPQTL
Ga0103681_1057901	Ga0103681_10579012	F020727	VEKSMQKYVVLLKVSSGKGGEFWNSFSKMSDNPMKGVMIESSYSLFGYWDFTIFFKADSNDNAFHFIGENLRAIPGVADTSTSPMTVLKEHTPH*
Ga0103681_1063272	Ga0103681_10632721	F026037	MEEEDDKVHRLLHADMKVDRQLERLADVQKLTEIIHYYREKRARSSEIALAIVRFVREG*
Ga0103681_1069232	Ga0103681_10692322	F069627	VNLTDEDAIPVYIKISEKVLHLRRLGMPFTSIAERLGINPWMAKKAARWGNIQKA*
Ga0103681_1076330	Ga0103681_10763302	F043514	FVISQLAQENPKARGQTPESIGLLEASILEEIKKSGFVEKLLQH*
Ga0103681_1084164	Ga0103681_10841643	F058725	MGERLKAPFFACVGGGGVLTFVGTADDQAVYWFLEAIDPRPGEGPWPPVGRLQRPRYRVSPIRFGTGFYYGIRIPYGGTVRWHSVNEVNSGLTLTDASKHAVNIYLAPKRPPLIRYGMHYKFGEVKYGEGSGLYDRVTVKAVLD*
Ga0103681_1100262	Ga0103681_11002622	F047545	MAKTPEQVDELLKLVGDQDIATLRALERQLHSLLEQKERNETLQRHGEADRDALSKQCPNVPIDPDLLALVGIHPENPVKDDKALIREIIARRLTD*
Ga0103681_1130056	Ga0103681_11300561	F023250	MGMRLRVLQIGSLVPPGWGFTETEAKKPAGFCTIKEATEYAMQNLGLKQGEFKVLKGRGVDLDGNPKGKWILKVKTE*
Ga0103681_1145172	Ga0103681_11451722	F055518	MATLQKRIPIINYVQNKWKLTPKVAEESYRAWLNGFTSDGKIPLKDFQEIYDTAYASQLTPTPVP
Ga0103681_1153590	Ga0103681_11535902	F009862	MEGFIMKQPKEEKPLLVRCPNCKQLREPDYNELTRRYVCSLCAAPVDAQVLIEKKKRGLK
Ga0103681_1155917	Ga0103681_11559172	F061534	MNDYGHIPPELMERVRGMFLTLFGGKEKLDCWLTRIADELADAGNPANRPIKLDPSLIPEEFQSVMHRPKEVVDLIVEKLDSLSVFGYTAKIIKQSETSLAIVLDQASGHVIEEAAGPDPDNLIHSLVEKYGPNLEVVKE*
Ga0103681_1166473	Ga0103681_11664731	F045635	LSRQFLKDMSAFEKSASARDLENVERAIAAIAQAPDLPRRVPSFYDPSLPSYLYRSGNLLIHYRTPHPGIVEFLNLFWPKV*
Ga0103681_1172618	Ga0103681_11726181	F043272	ATIPFSSIPDRRKGTKSDEELLKESPNVTPDGIVHLATRPEDIMVVILGGKHRHSVFLPMWTGRNTLSVTKVIR*
Ga0103681_1191761	Ga0103681_11917612	F045206	VFVMSRGTIVEEIPGDELDEVRIVEAIVRGPGMSKTARSPLGVAMPKAPSKSGNP*
Ga0103681_1192284	Ga0103681_11922842	F065251	MYLRHFTKRSKKYYYIAKAVRKGTRVVQKSILYIGTADKLYEKLIKLGKK*
Ga0103681_1194070	Ga0103681_11940702	F007341	VDVVFAPSAFRHGYAEQDFYELLAGRYLKIRSQRGLDDVYELLGRNLSGDYLHIVYRMLPAGRLRVFHISRMTEKQKRRYQRLER*
Ga0103681_1210596	Ga0103681_12105962	F028610	VFDDALKHKAVDPTLPIPAEKIQWIQEQMVKAGKLAKPLALSAVSAPEYRARALKLVDK*
Ga0103681_1215565	Ga0103681_12155651	F090690	SVRRQGNPSFIHPIKINRSQIYSEMSLSEFIKNLNVFSQEAIQ*
Ga0103681_1217189	Ga0103681_12171892	F097998	VALFFHSDDVDHLISLKEAVAIAESALKDIPLRAGGNAPRTRLNLHRNGGEYPYDTLL
Ga0103681_1258797	Ga0103681_12587972	F076985	MVILDMILEVLGKMVDALAEQSDLHFGRAGIRLMNPELLDDFLFLLWSNSHVLRFFSLFPFLI*
Ga0103681_1281126	Ga0103681_12811261	F050246	VIVTLVPAVPNAGEKLVTVGAEPTKKLVALTPVPKGLVTAIGPVVAPAGT
Ga0103681_1294684	Ga0103681_12946841	F065699	VVGLAIGGALVWFAIGRLPRSGEEVPPKERAAEAEWISRTINKRGGMAPNDLVEEVLELHVEYLERQAEESA*
Ga0103681_1334175	Ga0103681_13341752	F008177	MSGTLMTLVIVESALTAAAVVMFLYRGMLDMKEEDHVILDTAEAHLAREQDSIRRKVTVLSKYIKVVGVAWSLLLVVMFGLWVAEGLNLI