3300007281: Activated sludge microbial communities from bioreactor with dissolved oxygen in CSIR-NEERI, Nagpur, India ? 2ppm of oxygen, sample B

Overview

Basic Information

• IMG/M Taxon OID: 3300007281
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118053 | Gp0127445 | Ga0104349
• Sample Name: Activated sludge microbial communities from bioreactor with dissolved oxygen in CSIR-NEERI, Nagpur, India ? 2ppm of oxygen, sample B
• Sequencing Status: Permanent Draft
• Sequencing Center: Xcelris labs Ltd
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76313382
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Activated Sludge Process Metagenomes
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Aeration Tank Of Activated Sludge Process → Activated Sludge Process Metagenomes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Nagpur, India
• Coordinates
  • Lat. (^o): 21.1458004
  • Long. (^o): 79.0881546
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001844	Metagenome / Metatranscriptome	627	Y
F002505	Metagenome / Metatranscriptome	553	Y
F007965	Metagenome / Metatranscriptome	341	Y
F016311	Metagenome / Metatranscriptome	248	Y
F018391	Metagenome / Metatranscriptome	235	Y
F018949	Metagenome / Metatranscriptome	232	Y
F025775	Metagenome	200	Y
F064484	Metagenome / Metatranscriptome	128	Y
F064603	Metagenome / Metatranscriptome	128	Y
F064753	Metagenome / Metatranscriptome	128	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104349_1007519	Not Available	543
Ga0104349_1007597	All Organisms → cellular organisms → Bacteria → Proteobacteria	2173
Ga0104349_1013107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	537
Ga0104349_1026674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1175
Ga0104349_1030640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	1689
Ga0104349_1036418	All Organisms → cellular organisms → Bacteria → Proteobacteria	1381
Ga0104349_1038011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1513
Ga0104349_1041326	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	623
Ga0104349_1046939	All Organisms → cellular organisms → Bacteria → Proteobacteria	2277
Ga0104349_1058353	All Organisms → cellular organisms → Bacteria → Proteobacteria	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104349_1007519	Ga0104349_10075192	F064484	VSAIVVEGASKHWTTGDGKVRAVDRLSFSLDAGTLNVLLGPSGC
Ga0104349_1007597	Ga0104349_10075974	F064753	MDIQQAMKNPARTFGTPEALEQATGLSDSQKRAILLQWKDQLHQLLAADDEHMLRAGAQAGANGECLRRVIDVLTRLR*
Ga0104349_1013107	Ga0104349_10131071	F082508	MSSPVPSPRDEPAVTGLQEQLALIEPQNLARLEQPLRHGFADRSTARKGLEIAAGVAIADRLGTISQKQGRQIGPNGYKMIVWLGSRWLQMEAPGNTAVPFTQYRILHDFGWQDNGKPARQALRQTLLNLQEARWEGEVNDPVTGRKTHEDHFGIIDRIIWPIV
Ga0104349_1026674	Ga0104349_10266742	F001844	VPPQHLARWLTRLLALLLALLTLTPAAHAERWAGELPAGDVLALQKEALELVAGFPGARRDVGPAQVEALLRIDARLEPALVQITRQYTANYQKSSSVESRLWHAAFDLVKAFIGAYQLALKAGYPRAENRRWRAILPWVLVRLARHRGLDGRYRLFRYSHWIPAQWRDFHELYEFARMRGWQREQLVLGGGGFSQPGVTLEQEYIQTLLLMRLDSGNFTPDQVEWISKQLGDWAPTLALAPPPGEGAGFFVDLTGAQGLRRRDRPGVGGRLLYLDLAPVYARVVERMRWLPEQDDATTEAGDLPPREQRLLLMRLAALYGPEAIAQAPRAERFRTEAQVR
Ga0104349_1030640	Ga0104349_10306401	F018391	ARHLEWVAREIDEWCAPLRLAREPSSVASVYVDLGSREGLKRRTPAPLEGRVLFLDTRPLHAMLMQNVVVIEQKIRHQPLSDRTQRRSEQLGLLAKLAAQVDPEFRPFARRGERTAAVGHVDAIVGFAKISGFLHEEERDPLPRVEPGKSFGGTMEIAVFGHARNEAERRRDLARARLATWGAAGGPWEVKDVSQTGFRLIAPMSAASAVTLNTLASIRPWGHAFWTLGIVRRMKRLTSDRAEIGLQVIANTLIGVELVEQRRSSSAGGADYSVEGEHSTLDGRTFHGLFLALRKREGGSAVQSLIVPAVEYQPSRRFRMQTARSIVPIRFGRLIEQQPDWIWAAVEPLDLSGTGDLSARTTMSGLGLSPH*
Ga0104349_1036418	Ga0104349_10364183	F076350	MAASLQKIISGRYAGRNGPIALVLPDGGRLALSAAPEVEVVARTWRG
Ga0104349_1038011	Ga0104349_10380113	F002505	MFEFLTSPGKDTTDPLVSAKTVSVWLRQLPALDVIGRQQHVMKAFDGMRLSRKPVDPARVLALQFLDSALGADRRQLIKQYVENAETSPKLAERLWQAVHELTQGFSAAYQGALEEGLSQAANSRWKPLIPFLFTRFTHYAGTDAKLRVYRYERWIPARWADLHRTFLRATELGVERAPTSLAGAGANATHWTLEQEYLYTQLVHQLNTGNMTPGEIDWACSQLRAWSRRLALDAVPRSPEGFFVDIAGRTGLQRRTGNDSGSMLRYLDTSPLADQIDRAVAALH
Ga0104349_1041326	Ga0104349_10413262	F064603	MTIKKFDYSKSTEDIFYKVIYPLYPREFLFGSNYEQFAFLVSSNFILNATQWEYILEHWEQKESILIIETK*
Ga0104349_1046939	Ga0104349_10469393	F016311	MIIGALLVAVGVLGYMYWDSEHNTVLKAPGVEIKKN*
Ga0104349_1058353	Ga0104349_10583531	F069722	RRVRLNAELDPKAKKERPDLKKGAAHEKALGHRSGAALQE*
Ga0104349_1071518	Ga0104349_10715186	F007965	SKNKKETRGCKRPLSGRKKAEYESKTIAFRVRVEFVEPIKKMVKDYVSERLKGDA*
Ga0104349_1087169	Ga0104349_10871693	F025775	MKQLLTFQGFPMVVVTGLIIWSWISILSVLIGSFF*
Ga0104349_1099486	Ga0104349_10994861	F018949	SPPELPEWLRGDPVAEHLRAEGRTVTRAAWLEAAYGSSSETVLMFDKEMREWVRRYFPADPHEPVC*