Basic Information | |
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Family ID | F076350 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 118 |
Average Sequence Length | 43 residues |
Representative Sequence | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSEPEVEILART |
Number of Associated Samples | 107 |
Number of Associated Scaffolds | 118 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 24.79 % |
% of genes near scaffold ends (potentially truncated) | 98.31 % |
% of genes from short scaffolds (< 2000 bps) | 90.68 % |
Associated GOLD sequencing projects | 104 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.52 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (91.525 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (6.780 % of family members) |
Environment Ontology (ENVO) | Unclassified (31.356 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (32.203 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 15.28% β-sheet: 15.28% Coil/Unstructured: 69.44% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Wetland Sediment Freshwater Wetlands Estuarine Natural And Restored Wetlands Soil Groundwater Sediment Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Glacier Forefield Soil Soil Arctic Peat Soil Permafrost Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Untreated Peat Soil Tropical Peatland Bog Forest Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Fen Peat Soil Sediment Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Aeration Tank Of Activated Sludge Process Anaerobic Digestor Sludge Industrial Wastewater |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
A5_v_00030830 | 2124908036 | Soil | MKEPLSKIVESRYGGRDIPVALVLPDGGRVALSATPEVDVYART |
A5_c1_01003840 | 2124908044 | Soil | MGMKEPLSKIVESRYGGRDIPVALVLPDGGRVALSATPEVDVYART |
F14TC_1025593141 | 3300000559 | Soil | MAQPLQKIITSRYGGRNLPVTLVLPDGGRVPLSSEPEVEVLART |
AP72_2010_repI_A01DRAFT_10659541 | 3300000579 | Forest Soil | MAPPLTKIIASRYSGRNIPIALVLPDGGRVPLSEAPEVDVYARTWQGL |
AP72_2010_repI_A100DRAFT_10611312 | 3300000837 | Forest Soil | MAPPLTKIIASRYSGRNIPIALVLPDGGRVPLSEAPEVDVY |
AP72_2010_repI_A001DRAFT_10814011 | 3300000893 | Forest Soil | MAPPLTKIIASRYSGRNIPIALVLPDGGRVPLSEAPEVDVYAR |
Ga0055460_101508651 | 3300004011 | Natural And Restored Wetlands | MSATMAEPLKRIIAHRYGGRNLPVTLVLPDGGRIPLAPSSDVE |
Ga0062590_1017561562 | 3300004157 | Soil | MATMAEPLQKIIASRYGGRDLPVTLVLPDGGRLPLASRTE |
Ga0066395_109588532 | 3300004633 | Tropical Forest Soil | MNSLSKMVANRYGGRNLPIALVLPDGGRLALSETPEIDIYARTWSGL |
Ga0070683_1020588282 | 3300005329 | Corn Rhizosphere | MTLPLQKIITNRYGGRNVPVTLVLPDGGRVPLSSDPELEILARTWRGLKA |
Ga0070675_1000305226 | 3300005354 | Miscanthus Rhizosphere | MTQPLQKIITSRYGGRNLPVTLVLPDGGRVPLSSQPEVEIL |
Ga0070671_1011852321 | 3300005355 | Switchgrass Rhizosphere | MTLPLQKIITNRYGGRNLPVTLVLPDGGRVPLSSEPELEVLARTWRG |
Ga0070710_106467182 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MKQPLQKLIASRYGGRNIPAALVLPDGGRVALSKTPEINIYARTWNGLRALA |
Ga0066702_104476382 | 3300005575 | Soil | MSRPLTRIIASRYGGRDIPVALVLPDGGRVALSERPE |
Ga0068861_1003770793 | 3300005719 | Switchgrass Rhizosphere | MTLPLQKIITNRYGGRNVPVTLVLPDGGRVPLSSDPELEIL |
Ga0068862_1001853621 | 3300005844 | Switchgrass Rhizosphere | MTQPLQKIITSRYGGRNLPVTLVLPDGGRVPLSSQPEVEILARTW |
Ga0068862_1026563622 | 3300005844 | Switchgrass Rhizosphere | MAEPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSNTEIELVA |
Ga0066794_100841201 | 3300005947 | Soil | MGMKEPLSKIVESRYGGRNIPVALVLPDGGRVALSATPEVDIYARTWSGVRA |
Ga0066696_106250873 | 3300006032 | Soil | MNQPLQKIIASRYSGRDIPIALVLPDGDRVPLSETPEVDVYARTWQGLKTL |
Ga0066656_110632992 | 3300006034 | Soil | MTNSLSKMVVNRYGGRNLPIALVLPDGGRLPLSETPEIDVYA |
Ga0066652_1002868851 | 3300006046 | Soil | MNQPLQKIIASRYSGRDIPIALVLPDGDRVPLSETPE |
Ga0075026_1002368713 | 3300006057 | Watersheds | MPEPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSDAEIEILARTW |
Ga0070712_1002302623 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MKQPLQKLIASRYGGRNIPAALVLPDGGRVALSKTPEINIYARTWNGLRA |
Ga0079037_1018710992 | 3300006224 | Freshwater Wetlands | MSATMAEPLKRIIANRYGGRNLPVTLVLPDGGRIPLAPQPEVEILA |
Ga0068871_1006955313 | 3300006358 | Miscanthus Rhizosphere | MTLPLQKIITNRYGGRNVPVTLVLPDGGRVPLSSDP |
Ga0066665_102517791 | 3300006796 | Soil | MNQPLQKIIANRYSGRDIPIALVLPDGDRVPLSETPEVDVYARTWQGLKTLAS |
Ga0066660_112745171 | 3300006800 | Soil | MNQPLQKIIANRYSGRDIPIALVLPDGDRVPLSETPEVDVYARTWQGLKTL |
Ga0074063_124600823 | 3300006953 | Soil | MAEALQKIIASRYGGRNLPVTLVLPDGGRVPLSSNS |
Ga0104349_10364183 | 3300007281 | Aeration Tank Of Activated Sludge Process | MAASLQKIISGRYAGRNGPIALVLPDGGRLALSAAPEVEVVARTWRG |
Ga0105238_102746003 | 3300009551 | Corn Rhizosphere | MKQPLQKLIASRYGGRNIPAALVLPDGDRVALSKTPEINI |
Ga0126380_104065721 | 3300010043 | Tropical Forest Soil | MKAPLQKIIASRYRDRNLPIALVLPDGGRVPLSETPEIDVYARTFNGLKALAS |
Ga0133939_11259152 | 3300010051 | Industrial Wastewater | MAEALQRIITDRYGGRDLPVTLVLPDGARVPLSXXXXXXX |
Ga0074046_100493334 | 3300010339 | Bog Forest Soil | MKEPLQRIIAHRYAGRDIPISLVLPDGGRVPLSAAPEVDVYARTWQGLRTLAS |
Ga0074045_1000283616 | 3300010341 | Bog Forest Soil | MNAPLQSIIASRYRGRNIPIALVLPDGGRVALSDAPEVDVYART |
Ga0116238_101850401 | 3300010347 | Anaerobic Digestor Sludge | MAASLQKIIAGRYAGRNVPIALVLPDGGRLSLSAAPEVEVVARTWRGIN |
Ga0134128_121697352 | 3300010373 | Terrestrial Soil | MKQPLQKLIASRYGGRNIPAALVLPDGDRVALSKTPE |
Ga0126383_135922181 | 3300010398 | Tropical Forest Soil | MNSSLSKMVASRYSGRNLPIALVLPAGGRLALSETPEIDVYARTW |
Ga0105246_115199042 | 3300011119 | Miscanthus Rhizosphere | MTLPLQKIITNRYGGRNVPVTLVLPDGGRVPLSSDPELEILAR |
Ga0137389_105994983 | 3300012096 | Vadose Zone Soil | MHQPLQKIIANRYSGRDIPISLVLPDGDRVPLSETPEVDV |
Ga0137459_11544642 | 3300012228 | Soil | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSEPEIEIAARTWRG |
Ga0137360_105272912 | 3300012361 | Vadose Zone Soil | MKSVLPKIVANRYGGRNLPIALVLPDGGRVALSASPEI |
Ga0164307_106636772 | 3300012987 | Soil | MKQPLQKLIASRYGGRNIPAALVLPDGGRVALSKTPEINIYART |
Ga0157374_115029011 | 3300013296 | Miscanthus Rhizosphere | MAPPLKRIIENRYGGKNLPGALVLPAGGGVRLSAA |
Ga0157378_104654631 | 3300013297 | Miscanthus Rhizosphere | MAEPLQRIISNRYGGRNLPVTLVLPDGGRVPLSSNAEIEVLARTWRGLK |
Ga0157372_120397602 | 3300013307 | Corn Rhizosphere | MKQPLQKLIASRYGGRNIPAALVLPDGGRVALSKTPE |
Ga0120127_101718552 | 3300013503 | Permafrost | MVLAPISIMKQPLQKLIASRYGGRNIPVALVLPDGGRGPL |
Ga0120126_10005081 | 3300013831 | Permafrost | MKQPLQKLIASRYGGRDIPVALVLPDGGRVALSKTPEINIYAHTW |
Ga0157380_109937761 | 3300014326 | Switchgrass Rhizosphere | MPQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSEPEVEILA |
Ga0157376_108193381 | 3300014969 | Miscanthus Rhizosphere | MAPPLKRIIENRYGGKNLPVALVLPDGGRVPLSAAPEVDVVA |
Ga0167639_10193191 | 3300015080 | Glacier Forefield Soil | MKEPLSKIVESRYGGRDIPVALVLPDGGRVALSATPEVDVYARTW |
Ga0132258_102394331 | 3300015371 | Arabidopsis Rhizosphere | MNASLSKIVASRYDGRNIPVALVLPDGGRVALSQPTEVDIYARTWSG |
Ga0132258_115182291 | 3300015371 | Arabidopsis Rhizosphere | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSDPEVEILARTWRGLKAL |
Ga0132256_1015270082 | 3300015372 | Arabidopsis Rhizosphere | MAAALKKIIESRYGGRDLPVTLVLPDGGRMALSSRPDL |
Ga0132257_1021222441 | 3300015373 | Arabidopsis Rhizosphere | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSEPEVEILAHTW |
Ga0132255_1010300723 | 3300015374 | Arabidopsis Rhizosphere | MNDSLSKIVASRYGGRNIPVALVLPDGGRVALSQPT |
Ga0132255_1020399233 | 3300015374 | Arabidopsis Rhizosphere | MAAALKKIIESRYGGRDLPVALVLPDGGRMALSSRPD |
Ga0182034_109182452 | 3300016371 | Soil | MAAPLQKIIANRFGGRNLPIALVLPDGARVPLSAD |
Ga0190266_104580241 | 3300017965 | Soil | MATPLQSILASRYGGRGIPAALVLPDGGRVALSSSPEIEV |
Ga0187787_102334052 | 3300018029 | Tropical Peatland | MKESLQKLIASRYRGRNLPISLVLPDGGRVSLSDTPELDIYARTWEGLKAL |
Ga0187773_107789792 | 3300018064 | Tropical Peatland | MSEPLQKIIASRYQGRSLPIVLVLPDGGRVPLSADADIEIIARTWKGLKAL |
Ga0184632_104124082 | 3300018075 | Groundwater Sediment | MAEPLRKLIESRYGGRNPPVAPVLSDGGPGALSPTPEG |
Ga0184629_103669091 | 3300018084 | Groundwater Sediment | MNQPLQKIIANRYSGRDIPIALVLPDGDRVPLSETPEVDVYARTWQGL |
Ga0184629_105818682 | 3300018084 | Groundwater Sediment | MSATMAEPLKKIIANRYGGRNLPVTLVLPDGGRVPLSSEPE |
Ga0066667_112072861 | 3300018433 | Grasslands Soil | MSRPLTRIIASRYGGRDIPVALVLPDGGRVALSERPEVDVYARTWRGPKALP |
Ga0193729_10726763 | 3300019887 | Soil | MGMKEPLSKIVESRYGGRNIPVAVVLPDGGRVALSAAPEVDVY |
Ga0210347_12718132 | 3300021331 | Estuarine | LMAQPLQKIIATRYTGRNLPVTLVLPDGGRVPLSSEPEIEIAAR |
Ga0208586_10826902 | 3300025588 | Arctic Peat Soil | MADTLQKIITSRYQGRDIPIALILPGGSRVPLSTT |
Ga0208357_10311873 | 3300025703 | Arctic Peat Soil | MAETLQRLIASRYRGRDLPVAVVLPDGGRVALSQS |
Ga0207687_106417121 | 3300025927 | Miscanthus Rhizosphere | MKQPLQKLIASRYGGRNIPAALVLPDGGRVALSKTPEINIYARTWNGLR |
Ga0207706_103536571 | 3300025933 | Corn Rhizosphere | MTLPLQKIITNRYGGRNVPVTLVLPDGGRVPLSSDPELEILARTWRGLKALS |
Ga0207709_101545811 | 3300025935 | Miscanthus Rhizosphere | MPQPLQKIITNRYGGRNLPVTLVLPDGGRVPLSSE |
Ga0207669_103004433 | 3300025937 | Miscanthus Rhizosphere | MAEPLQRIISNRYGGRNLPVTLVLPDGGRVPLSSNAEIEVLARTWRGL |
Ga0207679_102727413 | 3300025945 | Corn Rhizosphere | MPEALEKVIANRYGGRGLPVAFVLPDGARVKLAPEPE |
Ga0207712_110482452 | 3300025961 | Switchgrass Rhizosphere | MPQPLQKIITNRYGGRNLPVTLVLPDGGRVPLSSEPEVEILA |
Ga0207639_106752862 | 3300026041 | Corn Rhizosphere | MAEPLKKLITRRYAGRDLPVTLVLPDGGRLPLSPQADIDI |
Ga0207678_116044981 | 3300026067 | Corn Rhizosphere | MALPLTSIIASRYAGRELPIALVLPDGGRVALSPKPEVE |
Ga0207641_110129162 | 3300026088 | Switchgrass Rhizosphere | MPQPLQKIITNRYGGRNLPVTLVLPDGGRVPLSSEPEVEIL |
Ga0207648_110515451 | 3300026089 | Miscanthus Rhizosphere | MKQPLQKLIASRYGGRNIPAALVLPDGDRVALSKTPEINIYA |
Ga0209496_102569332 | 3300027890 | Wetland | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVALSSNPEMELLARSWRGLKAL |
Ga0268265_124339131 | 3300028380 | Switchgrass Rhizosphere | MAEPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSNTEIEL |
Ga0302258_11705531 | 3300028770 | Fen | MAEALRHFIASRYDGRNVPVTLVLPDGARLPLSPA |
Ga0311347_102792313 | 3300029923 | Fen | MMSEPLQKIIASRYGGRDLPVMLVLPDGGRVPLSSSTEAEIIIRTWRALKAL |
Ga0302298_102232332 | 3300029980 | Fen | MMSEPLQKIIASRYGGRDLPVMLVLPDGGRVPLSSSTEAEIIIRTWRALKA |
Ga0311332_114085442 | 3300029984 | Fen | MNDSLSRIVANRYGGRNIPVALVLPDGGRVALSEATEVDIYARTWNGLR |
Ga0311334_111875771 | 3300029987 | Fen | MMSEPLQKIIASRYGGRDLPVMLVLPDGGRVPLSSSTE |
Ga0311336_113610352 | 3300029990 | Fen | MKDSLSRIVANRYGGRNIPVALVLPDGGRVALSEAPEVDIYARTWNGLRA |
Ga0311337_115601032 | 3300030000 | Fen | MSEPLQKIIAIRYGGRDLPVMVVLPDGGRVPLSSS |
Ga0318534_108064851 | 3300031544 | Soil | MNVPLQKIIASRYRDRNLPIALVLPDGGRVPLSEAPEVDVYARTF |
Ga0265313_102745652 | 3300031595 | Rhizosphere | MAQPLQKFIASRYGGRELPVTLILPDGGRVPLSAQPEVE |
Ga0306917_100404304 | 3300031719 | Soil | MAAPLQKIIANRFGGRNLPIALVLPDGARVPLSADPEVDVIARSWK |
Ga0306917_113297741 | 3300031719 | Soil | MAEPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSNVEIEILARTWRGLKA |
Ga0307469_102511981 | 3300031720 | Hardwood Forest Soil | MKQPLQKLIASRYGGRNIPAALVLPDGGRVALSKTPEI |
Ga0307469_117276861 | 3300031720 | Hardwood Forest Soil | MNQPLQKIIANRYSGRDIPIALVLPDGDRVPLSETPEVDVYAR |
Ga0307468_1001602601 | 3300031740 | Hardwood Forest Soil | MAEPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSDA |
Ga0318564_102863132 | 3300031831 | Soil | MAAPLQKIIANRFGGRNLPIALVLPDGARVPLSADP |
Ga0302322_1022403922 | 3300031902 | Fen | MKSSLTRFVAHRYEGRNLPVALVMPDGGRVALSDRPEVDIYART |
Ga0310912_1000062417 | 3300031941 | Soil | MKPPLQQIIARRYRDHNLPIALVLPDGGRVPLSETTEVDVYARTWNGLKALAS |
Ga0310910_107995692 | 3300031946 | Soil | MNSLPKMVANRYGGRNLPIALVLPDGGRLALSETPEID |
Ga0315274_100883095 | 3300031999 | Sediment | MFGALQKIIANRYGGRNLPVTLVLPDGGRVPLSSDAEIEILART |
Ga0315274_114049551 | 3300031999 | Sediment | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSESEIEILARTWRGLKA |
Ga0318559_100316124 | 3300032039 | Soil | MKPPLQQIIARRYRDHNLPIALVLPDGGRVPLSETTEVDVYARTW |
Ga0315281_116752342 | 3300032163 | Sediment | MMAQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSESEIEILARTW |
Ga0315268_109108432 | 3300032173 | Sediment | MSATLAEPLKKIIAGRYAGRDLPVTLVLPDGGRLPLSPRTEVDI |
Ga0315276_114821062 | 3300032177 | Sediment | MAQPLQKIIASRYTGRNLPVTLVLPGGGRVPLSSKPEIEIAART |
Ga0307471_1021416182 | 3300032180 | Hardwood Forest Soil | MKEPLSKIVESRYGGRDIPVAVVLPDGGRVALSPTPEVD |
Ga0315271_101816591 | 3300032256 | Sediment | MSATIAEPLRKIIASRYGGRDLPVTLVLPDGGRIPLAP |
Ga0315287_110622061 | 3300032397 | Sediment | MAEPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSE |
Ga0315287_119363681 | 3300032397 | Sediment | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSES |
Ga0335085_101101195 | 3300032770 | Soil | MKQSLQKIIANRYRGRNLPIALVLPDGGRVPLSEAPELDIYARTWDGLKAL |
Ga0316601_1023261571 | 3300033419 | Soil | MSATMAEPLKKIIANRYGGRNLPVTLVLPDGGRIPLAPQAEVEIL |
Ga0326726_107125281 | 3300033433 | Peat Soil | MARALQKIIASRYGGRNLPVTLVLPDGGRVPLSAQPEVEIFARSWAGLKALAS |
Ga0316627_1000188385 | 3300033482 | Soil | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVALSSNPEMELLA |
Ga0316627_1012999252 | 3300033482 | Soil | MSATMAEPLKKIIANRYGGRNLPVTLVLPDGGRIPLAPQAEV |
Ga0316621_100916773 | 3300033488 | Soil | MSATMAEPLKKIIANRYGGRNLPVTLVLPDGGRIPLAPQAEVEILARTWRG |
Ga0316621_103344102 | 3300033488 | Soil | MAQPLQKIIANRYGGRNLPVTLVLPDGGRVPLSSEPEVEILART |
Ga0370493_0029188_1_147 | 3300034129 | Untreated Peat Soil | MKSSLTRFVAHRYEGRNLPVALVMPDGGRVALSDRPEVDIYARTWNGLR |
Ga0370493_0147992_633_767 | 3300034129 | Untreated Peat Soil | MKDSLSRIVANRYGGRNIPVALVLPDGGRVALSESPEVDIYARTW |
Ga0364941_129242_1_108 | 3300034417 | Sediment | MSYPLQRIIANRYRGRDIPIALVLPDGDRVSLSETP |
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