3300006619: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-4B

Overview

Basic Information

• IMG/M Taxon OID: 3300006619
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0116224 | Ga0075529
• Sample Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-4B
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 125601434
• Sequencing Scaffolds: 44
• Novel Protein Genes: 46
• Associated Families: 43

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → unclassified Nitrosarchaeum → Nitrosarchaeum sp. AC2	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora carbonacea	1
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001823	Metagenome / Metatranscriptome	630	Y
F010394	Metagenome / Metatranscriptome	304	Y
F010512	Metagenome	303	Y
F012633	Metagenome / Metatranscriptome	279	Y
F013334	Metagenome / Metatranscriptome	272	Y
F014092	Metagenome / Metatranscriptome	266	Y
F014212	Metagenome	265	Y
F014525	Metagenome	262	Y
F016394	Metagenome	247	Y
F019675	Metagenome	228	Y
F021023	Metagenome	221	Y
F023003	Metagenome	212	N
F024640	Metagenome / Metatranscriptome	205	Y
F029425	Metagenome	188	Y
F039195	Metagenome	164	Y
F041378	Metagenome / Metatranscriptome	160	Y
F044471	Metagenome / Metatranscriptome	154	Y
F049598	Metagenome	146	Y
F051098	Metagenome	144	Y
F051904	Metagenome	143	N
F051905	Metagenome	143	N
F052849	Metagenome	142	Y
F052957	Metagenome / Metatranscriptome	142	Y
F058117	Metagenome	135	Y
F066747	Metagenome	126	Y
F068262	Metagenome	125	N
F074181	Metagenome	120	Y
F079153	Metagenome / Metatranscriptome	116	Y
F079367	Metagenome	116	Y
F080207	Metagenome	115	Y
F084901	Metagenome	112	N
F085859	Metagenome	111	Y
F085866	Metagenome	111	Y
F089563	Metagenome / Metatranscriptome	109	Y
F092956	Metagenome	107	Y
F096256	Metagenome	105	N
F097269	Metagenome	104	N
F097858	Metagenome / Metatranscriptome	104	Y
F101090	Metagenome	102	Y
F104110	Metagenome / Metatranscriptome	101	N
F104112	Metagenome / Metatranscriptome	101	N
F105105	Metagenome	100	Y
F106196	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0075529_1000984	Not Available	2153
Ga0075529_1001476	Not Available	1796
Ga0075529_1001888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1618
Ga0075529_1002000	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1568
Ga0075529_1002312	All Organisms → cellular organisms → Bacteria	1469
Ga0075529_1002664	Not Available	1377
Ga0075529_1002693	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1370
Ga0075529_1002773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1350
Ga0075529_1003134	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282
Ga0075529_1004106	Not Available	1136
Ga0075529_1004224	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → unclassified Nitrosarchaeum → Nitrosarchaeum sp. AC2	1120
Ga0075529_1004262	All Organisms → cellular organisms → Bacteria	1115
Ga0075529_1004276	Not Available	1114
Ga0075529_1004791	All Organisms → cellular organisms → Bacteria	1060
Ga0075529_1004986	Not Available	1042
Ga0075529_1005216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1021
Ga0075529_1005400	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1007
Ga0075529_1006462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	934
Ga0075529_1006529	Not Available	930
Ga0075529_1006595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07	926
Ga0075529_1006640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	925
Ga0075529_1009154	Not Available	811
Ga0075529_1009820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	789
Ga0075529_1010716	Not Available	761
Ga0075529_1011821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	731
Ga0075529_1014303	Not Available	676
Ga0075529_1014949	Not Available	663
Ga0075529_1015111	All Organisms → cellular organisms → Bacteria → Proteobacteria	661
Ga0075529_1015853	All Organisms → cellular organisms → Bacteria → Proteobacteria	648
Ga0075529_1016439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	638
Ga0075529_1017150	Not Available	626
Ga0075529_1019392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	596
Ga0075529_1019486	Not Available	595
Ga0075529_1020321	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	585
Ga0075529_1021920	Not Available	566
Ga0075529_1022174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora carbonacea	564
Ga0075529_1023020	Not Available	555
Ga0075529_1023050	Not Available	555
Ga0075529_1023526	Not Available	550
Ga0075529_1023561	All Organisms → cellular organisms → Archaea → TACK group	550
Ga0075529_1023596	Not Available	550
Ga0075529_1027007	Not Available	521
Ga0075529_1027601	Not Available	516
Ga0075529_1029250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0075529_1000984	Ga0075529_10009843	F092956	MNDSDDRMLARYQHLYNKARKVNAFQLQNIQRAETREMCISVLLKAVVICDDALRDMGIKE*
Ga0075529_1001476	Ga0075529_10014761	F079367	AWYKDNIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAESEITRLGGAAFIEKSEPMIEELKVYFDNLYESLKRPQPEEVEK*
Ga0075529_1001888	Ga0075529_10018882	F096256	ESMLVTAMIATVLVSGCLSSLPLGSTPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENTSYNRYFELMKNKSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDKTADSWVVATAASGATIITQPTTALS*
Ga0075529_1002000	Ga0075529_10020002	F014092	MKKVLIVLVLIMAVLAVNAQVINTTDSTRTVVKVADLQKAITDNIAKDYVGYTIKEATSVTANNIVTFEVVVVKGTATEVLVYDKEGIFVKKLPPVPKK*
Ga0075529_1002312	Ga0075529_10023122	F105105	MQGQICSNCQFGLEEPRGTVFARDRGPGWGTCRRNAPTVVVIQSPERTAFSQAAFPRVAEGDWCGEYAIKGERMGGYRGLE*
Ga0075529_1002664	Ga0075529_10026642	F049598	MRRVLIVALIAVAALALCAPAFAWPIALPWWQPAHHFTCVGKIKAVDATANTVTVRVHLASRGVADYLAEDLTISVDPAAKLFRAKGRRLTPIALTDVVVGEKLRVEGVVDCSAGAPVYVGKRLVMRHLPINDIKRFAFRGPVTAVDATTGTLSARLNSVTRVLSPYYHSEFGFAVAPNARVWVMKNGWPVKAALADVVVGDRVYAQGGVDRRHPAAPVFTIRWMLVRHAAAPTTVAP*
Ga0075529_1002693	Ga0075529_10026932	F051905	MLRNDETIISSISVTDIAFDVYLGKWNYRAIPKVKTWSYFLTIPKLNQKFWSG*
Ga0075529_1002773	Ga0075529_10027732	F085859	MNDEKTRERKPKEPSFVTGQEALIYEVERACGQLNKLKELQLNDPLLRAVAAEIRAHMDHLGLSLIELTEPCG*
Ga0075529_1003134	Ga0075529_10031343	F089563	LAQRPKKAYQRGAVVCEKCATPIYVYKLKALPEEFSVRCPHCGSRGIYLKRAIAIEEAPERRKKPRR*
Ga0075529_1004106	Ga0075529_10041062	F080207	LVLIGILTATTGVTEASTGDSAIQRFDIEIGDYKYGELTVDAQTDQFVAYANVGKQLVDKQVTLVARNGGASPYYIDIARSTVDNDGRVHWGGTFTAAQFDWIHVHGDGAVFFVRGNY*
Ga0075529_1004224	Ga0075529_10042243	F106196	MTEDDKNEIIKCTVSCPECGAEMVCTHEDPKHEEKHRCEKGHEWT*
Ga0075529_1004262	Ga0075529_10042622	F101090	MKGKKMAMYAAVAGIIAGGSAIAGGLYAHSAQPLFGYAQFYGIHSKYLSGVHVLVGIGVIMVVGGLISFKWPSVGAVIVCLGAIVGLIFTYNRGQYHWTPLVYYWWAPWLFAWIAGIFAGLSMSQRVQQLGAQKDGSVEPS*
Ga0075529_1004276	Ga0075529_10042761	F097269	MSVATDTVRSMSSRTRSGLGSLGDRVRRPSTAFCLVDGQSPGLVMEWLKVADLWSARVAYLDDGALVVSILPAARLEKAPVS*
Ga0075529_1004705	Ga0075529_10047051	F104110	GKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNDRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
Ga0075529_1004706	Ga0075529_10047061	F104110	GKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDHALID*
Ga0075529_1004791	Ga0075529_10047913	F044471	VPKDYRPPNPKTISSFVYLAVLVIGILLAYVAVRSLFG*
Ga0075529_1004986	Ga0075529_10049861	F084901	YTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPVCILLPILNYRYLIVVPFIAFLPDVGRAIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHIIIDTRKYAIIENVDGYLWNNMVLYALLLTLIGFLLVQLLRFSVTNKMAEEL*
Ga0075529_1005216	Ga0075529_10052162	F051904	MMARRWLLIILCGVIVLTLATRLVFREFDFGTSLPVGFPSDVPIVPGIITSCKTARSDDLVRVVEVHIQSDLSFQDVVQFYRNAFAIGATEHWNVPEFPLAGTGATETSSNALFGKNTVVVMINATGATTSVLVQVRG
Ga0075529_1005400	Ga0075529_10054001	F014525	MKQLQLFIRAAATLALLYAGAPFLSERASAQVFDFGQIDAFESMGTGTQRGGSPPKIIVDDGDWHTVFFTILESDSDAKIYWKSKDGDQTTIIHGPSVKAFQTAGQFKVEALGNENHSFKYGYVLFRLKNSKGEKT*
Ga0075529_1006462	Ga0075529_10064622	F019675	MWTTRKIITLIMGAIGVALIARGLIGGPWPLSVQFIAGILLLTLAVLRWRFII*
Ga0075529_1006529	Ga0075529_10065291	F012633	LVMLIVPPIVGVVTYIVVRLVWERDENGGSEIVRRRDPSAAAPAEGTSTDA*
Ga0075529_1006595	Ga0075529_10065951	F001823	MRAIDRDLIRGGHYGQRPRVPHLKAEHMAAPTNAAYVKKILANSEPST
Ga0075529_1006640	Ga0075529_10066402	F013334	MGRNKVKPEQASKVLMRMPTLRSFGEGRTCGEAIDTRTHAIRRGSGHGTLEGWFAVTGGDPSRARVAASTSRKAAAMAGVGQGRMTVEAG*
Ga0075529_1009154	Ga0075529_10091542	F097858	MSARQDICAIERAAGKAEPAATLILGTLLLLIRP*
Ga0075529_1009820	Ga0075529_10098202	F079153	VSAARVSSPNEAPGAGGCARPGCPQPVVRNAVGRPRLYCSPACRTEAYRQAHPASREPLIVEVDHGSTSSKGRPAGQVWLVRLRRGPHQAVLAIGLGKPSADYLASQIRDVIDPPPLATPARIR*
Ga0075529_1010716	Ga0075529_10107162	F023003	MAKNQTHKIDADDVVDDVPDRADMGALADTLVDRGRAVLDQFPAVADGARDVLAGAQDQVNGLSDMGIVAASGFALGVSSGLLLAGAPRAILILSMIPLALTLRSAFARGMRPARLLN*
Ga0075529_1011821	Ga0075529_10118213	F024640	HRRPPVPMSYRSLRLIAETLAWRAEMTLQGQIGEVIERRDDGRVSIRFDNGRLLMGRNVEPFERVGEPRLKAKGK*
Ga0075529_1014303	Ga0075529_10143031	F058117	VEWRWTNDPLGGPDEDHARCMAASGPRILEYCGHSFVLTTHECAPGTVLDDGRTPLACWRLHLDCTELGCAWSSGAASLSWRSVPFISPSASSATAREAGRRLLEAAEIDLAEAALC*
Ga0075529_1014949	Ga0075529_10149491	F084901	VIAVVAELVIFFIWFDGPARERYEILVHMALPICILLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIVDTRKYAIIENVGGYLWNNMVLYVLLLTVIGFLLVQLLRFSDTNKMAEEL*
Ga0075529_1015111	Ga0075529_10151112	F074181	MNRVWDYIGFAVWFSGLGYIVLWLLGSPDHLTLPPALHAVGVASAMLVPVRLLLRAVSRWRAAAGAALAVPMRKPAAVLRPRRRKPAHPLRPVKPRSHFGLRGMPE*
Ga0075529_1015853	Ga0075529_10158531	F052849	KILVADAVIVEPVATPKFPANRDINREFRQIRSLCEILNADTRAISKAFSQISYATEQGIISAEQGILTQEQGILPTKSEIIIG*
Ga0075529_1016439	Ga0075529_10164391	F104112	MWQIAMGVVSKTDENGNFIVEVCGQPNMKMARHFLEWQRPEKWGKRRKRHVPHNAGVLVIGGDVTKKPEYDTIASVKARKWKSFSRKFREAKT*
Ga0075529_1017150	Ga0075529_10171501	F079367	MATNLDKAGAKIIKVLRGDVADDKFQHKDDIAWWMRRFEALCTTEADAVVRKAMAKLNQAVALRDEGINLVEQLDRDISEAESEITRLGGAAFIEKSEPMIEELKVY
Ga0075529_1019392	Ga0075529_10193922	F039195	MEVRTVVFASVLGLLALFCFLSILLSGDDSEPQVDPRDNLPIWARFGTR
Ga0075529_1019486	Ga0075529_10194861	F041378	MPRRASIPRKSKYETIPANRTTARISAKLMMDGKKILSNRI
Ga0075529_1020321	Ga0075529_10203212	F029425	ALADSANDAVPVDVTVRLPQDLINGKKFKGIELGIDYKSVLALEKAIN*
Ga0075529_1021920	Ga0075529_10219201	F068262	MTDSPIIRDDDPRDRLAAALDALTVADLPRLAAAWTPELRDELRLADFVLSEHERGDLTHVVGPLLDRIPLLGAVVEESDDLAPHDRAGGEAALEVIEGAVMALHAADLLTPERRARLAAPWLAARSGDDDGTRSAG*
Ga0075529_1022174	Ga0075529_10221741	F066747	LPARDRRVPRGGRRACGGRLCRSVDVSRGGRRRRAVAGLAAAILLLAVALPLAACGSGHDPFTGLWWEPTTARRIEITKDGAQYRLFYGAARRPYQATREGDELRIRQPIGGDIVVKAAAEGRLDMVIGGKTSRLVHVPQHQ*
Ga0075529_1023020	Ga0075529_10230201	F014212	MKNKLLIAFLLLSASSSAQLIHVAGSKAIGLDGGYVKNGFNVSSRITLYKNNNFAYRGSIDYERVDFAISKASIIYVNPELIYNFYTLGENFFLSAKGGILSGVEFLSNSILDKKESQFFVGENIGLCAEYYVTNKIMFNLDLDQRFFQLSKVGKASFIIRLGINYNF*
Ga0075529_1023050	Ga0075529_10230501	F016394	TTSTIRRKERMQNEELSCLAKKVRTFLPNVESFPIATIYNVIKEQEKTKLNLSDFKELIYHLTGWDISFQVIRRQLEINQIVW*
Ga0075529_1023526	Ga0075529_10235261	F021023	MSQDKTIPVSVIAFRAEDYSPDGKNVIISLTTKYSIVDRKFSVPIECFHDLILDLQRLNTAASATSIEAPIQPAVAPSPVGDQNRLSIAV*
Ga0075529_1023561	Ga0075529_10235612	F085866	MENFERLSNKVLIRTCPCGIIFKTYDLKKVYHSNSCIASYVKKRYGVMIVQRRKLKQKKLEEKVMSKV*
Ga0075529_1023596	Ga0075529_10235961	F051098	SQSIQKGGSKMILTPVYNCRNCKKTYSGSKQEIANVSIEKLVSAARYTLGSPDHIFRIGGKTIQLSDLHQCNANEIGLANFIKIQIGNEVRKE*
Ga0075529_1027007	Ga0075529_10270072	F010394	MSETRNLRNVGSGDVDTWRAEFDELELRMDALRQAFLDGVRSFSMTVETLERIHGRFDDLVEQLHKMHCTYPFGGWPGQEDCRFEPPVTYESDAHKPADV*
Ga0075529_1027601	Ga0075529_10276012	F010512	MIDECLMTEDCPGYDRDQRICLIRPGDCEFRPADGEAAVTFEMPEALPLDAPALDAPAGV
Ga0075529_1029250	Ga0075529_10292501	F052957	AGGPEEGRRHRRAQRVWAAPMVKAERMVGRSCRGSKMMSDDLQAFRERAARAVAKVARGSTAGNADHYTRMADAVIAEFAKPTNAMIDAAYEAVRFDEAWAINSRRDFVKAVNAMVRTTLNKRS*