3300002596: Hydrocarbon contaminated oil fields microbial communities from Alberta, Canada - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April10

Overview

Basic Information

• IMG/M Taxon OID: 3300002596
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047444 | Gp0055226 | Ga0041825
• Sample Name: Hydrocarbon contaminated oil fields microbial communities from Alberta, Canada - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April10
• Sequencing Status: Permanent Draft
• Sequencing Center: McGill University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 274110281
• Sequencing Scaffolds: 38
• Novel Protein Genes: 45
• Associated Families: 39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin170	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Kovacikia → Kovacikia minuta	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → Methanofollis liminatans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp.	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanohalobium → Methanohalobium evestigatum	1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.Bin155	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Medicine Hat, Alberta Canada
• Coordinates
  • Lat. (^o): 50.033333
  • Long. (^o): -110.666667
  • Alt. (m): N/A
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F005744	Metagenome / Metatranscriptome	391	Y
F009968	Metagenome / Metatranscriptome	310	Y
F010099	Metagenome / Metatranscriptome	308	Y
F015738	Metagenome / Metatranscriptome	252	Y
F017851	Metagenome / Metatranscriptome	238	Y
F018746	Metagenome / Metatranscriptome	233	Y
F022442	Metagenome / Metatranscriptome	214	Y
F023098	Metagenome / Metatranscriptome	211	Y
F031138	Metagenome / Metatranscriptome	183	Y
F032289	Metagenome / Metatranscriptome	180	N
F033857	Metagenome / Metatranscriptome	176	Y
F034940	Metagenome / Metatranscriptome	173	Y
F039036	Metagenome	164	Y
F043917	Metagenome / Metatranscriptome	155	Y
F043951	Metagenome / Metatranscriptome	155	N
F045124	Metagenome / Metatranscriptome	153	Y
F049068	Metagenome / Metatranscriptome	147	Y
F051165	Metagenome / Metatranscriptome	144	Y
F053364	Metagenome / Metatranscriptome	141	Y
F057400	Metagenome / Metatranscriptome	136	Y
F063807	Metagenome / Metatranscriptome	129	N
F064732	Metagenome / Metatranscriptome	128	Y
F069722	Metagenome / Metatranscriptome	123	Y
F071368	Metagenome / Metatranscriptome	122	N
F072352	Metagenome / Metatranscriptome	121	Y
F078878	Metagenome / Metatranscriptome	116	Y
F082738	Metagenome / Metatranscriptome	113	N
F083694	Metagenome	112	Y
F083876	Metagenome / Metatranscriptome	112	Y
F086282	Metagenome	111	N
F089495	Metagenome / Metatranscriptome	109	N
F090426	Metagenome / Metatranscriptome	108	N
F091072	Metagenome / Metatranscriptome	108	Y
F091594	Metagenome / Metatranscriptome	107	Y
F097599	Metagenome / Metatranscriptome	104	N
F100040	Metagenome	103	N
F101218	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
draft_1320619	Not Available	511
draft_1330936	Not Available	552
draft_1336479	Not Available	578
draft_1340673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	600
draft_1344872	Not Available	624
draft_1352809	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin170	676
draft_1353451	All Organisms → cellular organisms → Bacteria	681
draft_1355168	Not Available	694
draft_1358220	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	720
draft_1360315	Not Available	738
draft_1360750	Not Available	742
draft_1361043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	745
draft_1361512	Not Available	750
draft_1362161	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	755
draft_1363822	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	771
draft_1364371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Kovacikia → Kovacikia minuta	777
draft_1367441	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	809
draft_1370463	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028	845
draft_1375245	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → Methanofollis liminatans	910
draft_1375850	All Organisms → cellular organisms → Bacteria → Proteobacteria	918
draft_1380397	All Organisms → cellular organisms → Bacteria → Proteobacteria	993
draft_1386109	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012	1114
draft_1389687	All Organisms → cellular organisms → Bacteria → Proteobacteria	1207
draft_1394321	Not Available	1361
draft_1394598	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1372
draft_1394937	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp.	1385
draft_1399096	All Organisms → Viruses → Predicted Viral	1578
draft_1402605	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1798
draft_1404204	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanohalobium → Methanohalobium evestigatum	1927
draft_1406145	All Organisms → Viruses → Predicted Viral	2108
draft_1410352	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.Bin155	2685
draft_1414758	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3933
draft_1414845	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	3970
draft_1415788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	4444
draft_1417572	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	5813
draft_1418397	All Organisms → cellular organisms → Bacteria	6905
draft_1419371	Not Available	8981
draft_1420439	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	15349

Sequences

Scaffold ID	Protein ID	Family	Sequence
draft_1320619	draft_13206191	F064732	MPKVSEFKWKDMEAEAEAATAAARERCTMPLAQSAERHVRFPSSPMAPGQFIAATATRSIDQPDHPEDT
draft_1326941	draft_13269411	F078878	GPRVSAAIFGRVWEIVCDASPTEENKDIATCGLSGVNEEQTENEAPEVAPVVIRIHATPVNHVDGWSWSHVVTEIRQWADIYPDPLPDPNDISEAEARALLKTIYQHPVVIAEFERRRMVAEATQREYRDARTIQYAIDVGVDLPDPTPPPVMQEFPCTDDGNGDRLVAQYRDSIRYC
draft_1330936	draft_13309362	F005744	APDAPPEQALYRIQQTYPDGSGGRLNIDWTGLHRLHDLIHDWIAMEGCVCETCSTRGCHRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPQDEIRRLVEV*
draft_1336479	draft_13364791	F010099	MADTKSSFWTPRTAAVVIGAVLLVVALAYLVSLPQNKYHSSDLLEPTYAADAELGFWMVDEYDPEVDVYHLLVVMEHDDGTFEWLDGDGIWLPRRAVEGTFTVIGSFDARKAHL*
draft_1340673	draft_13406732	F022442	VTFVSVGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRRREVVVSRRYWGDAPGTYEDVEQGLRLRRSQTDRSLMLTEQGRVYSMPIRAVHDVREGREESCGISLLVTDARQLDDAHSRQTVLEVRA*
draft_1344872	draft_13448722	F032289	MRAWDITFILIVVQACIGLINGIGLFDVTYFTTQNDSTTAYTVGDISNLHDVESGGEVSQMSYFDLAVTFGMAGINLLFKIVEAIVFIFPTLVNQFHIPLPLAAVLQSMIYLQVAWGYSQWKSNRSGRSTD*
draft_1349305	draft_13493052	F097599	HNLQETDMDDESKGLLKTIADALTRAPATQHDNLAEMTNLKQELATKTTEFENLKQELATLKAAQETAKKDAEWDVMKANLPAGWLGAKEAETRKEYEAAPGAFALKVVAFKNTQPGEKAAEGSGVGQSADGAESTEEQQFANLAAEFAKRTGIKVV*
draft_1352809	draft_13528091	F086282	MLILNQIDSLSKRFCSNFVIQRHCPVCNGYGAHKHGFYRRTLPDSAVQKVRVPRFLCLKCHKTFSCLPFCLVRRLGISLSGLLRCAASNDPWTVLEEVYMIARSTLWRWRRLGKKLLTALPELLAFFGDSWIEVSHTISRIQYPCS
draft_1353451	draft_13534511	F069722	RRRRVGLSAGLDPKAKRERPDLKKGAAHEKALRHGSGAALQ*
draft_1355168	draft_13551682	F032289	MRAWDITFILIVVQACIGLVNGVGLFDQTFFATQNDSTTSYTVGNISDLHDVETGGEVSQMSYFDLAVTFGVAGINLLFKIIEAVVFIFPTLVNQFHIPLPLAAVLQSMIYLQVAWGYSQWKSNRSGRSTD*
draft_1358220	draft_13582202	F049068	EDGDQTHHVGEYRIETLVRALRALQACGYDDVEVGSIEQGGKQHLLLIGLDGEARFGDRQMGCIAVVPVGVE*
draft_1360315	draft_13603153	F043951	MEHLSLGRPIEASLGPRYQCPMCGLKLWTIQAPWTGWQEWYRTEDGRRHYKHSCNIMRDALVMFRWMFGQDW*
draft_1360750	draft_13607502	F009968	MNSCIGCRSHYREQHFWIFQIDFCGLDGEVVGFDCPLGVIATEGCPAYERPFAWPAGATP
draft_1361043	draft_13610431	F053364	MSDPLNDILVECCKLRGCYPLMHRTLHEFDWFCSCVIWGAGRDIDNEIVQAEADGDEALSGLLRDLRAEKNMIRDRFGGQTPYGPDELIRFAEAFRIYCREQYGDEEVGA*
draft_1361512	draft_13615122	F083876	MEERSNSSKNWYALGTIEKSGSRWIVKDLLVRWNERTEEKETEDGPIVEYIYDAHRLDYDIPAEVQLGVEAVEYYLEAAQSAVLQ
draft_1362161	draft_13621612	F004383	MACDCENPCRECKGNGSECSMDPAECGHAVLPSTDNLLERAFMARIRAEEYREDLAALQREFDARPDVLDLKRRIERCEEERRTCIEQAKAAGVSKMGNYLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDDCCEVEVKEIGVSVEYERPEAGE*
draft_1363822	draft_13638222	F043917	MSPYDWWLKMYEIWMDLCFEVNALRNCRNQDKGEIEKIKELLIREGIWK*
draft_1364371	draft_13643712	F072352	MSSPKRAFSDIKHAMTVYSLPECPNGCGEMLALDDGWQCPICYRYLGYRRGEQHP*
draft_1367441	draft_13674411	F049068	EDGDQTHHVGEYRIETLVRALRALQACGYDDVEIGSIESRDHTFLLLIGLDGEARFGDLQMGCIAVLPMGVD*
draft_1370463	draft_13704631	F051165	MTTSFQKALAVLASIASVLAGVVTIASYLSGEDVTLPPSLTAPSSESQPIIIHARVVFIEKNMTYAIDYDKNLIKLNESTIIVK*
draft_1375245	draft_13752451	F034940	MGNDCWYYRAQYAGMTKVCMRQSIVECGRIKRFGLCPIPPDSEAWRRCGFALGQHEIPLMVEDCNE*
draft_1375850	draft_13758501	F043917	MSPYDWWLKMYEIWMELVFEVNALRNCRNQDKGEIEKIKELLIREGIWK*
draft_1380397	draft_13803972	F083694	MEVNQVEKLKNRQLAKLLTHLEQTGQLTVELEKTLKRSFRYAFEDVETLIQRLGLDKEDKNDNKN*
draft_1386109	draft_13861091	F023098	MDERRQNWTCGAHHELVESLRDINQKLDGMIVRQIAYAETSARIEEKQEQIERIVTNGLSHNVANIAKRLDIFCEEVKKRLDELEEFKWFRLPITRLRDTIFWYVFKIALAGGAIYLIIHYSGDLIRGITK*
draft_1386109	draft_13861092	F039036	MTTFQIIIRKIAVYFSKPIWSFIRNCVFWLFRLNKIADVRRTISEIKGISIESLMRGFCWQEDKAGDWTSWPTTLVCKNLNGDCDDAATLAKWWFKKHGIEARILNLYSATEGHTVCVTKDRGTMVTNERVVNLNPTCWEREVLGYFNGKYEVII*
draft_1389687	draft_13896873	F091594	MNENGITQYCLGNGEPKCDGCKQEKNWQTLNQMPDALRKSIQSSAQRIDDTACILSGRRWYVSA*
draft_1394321	draft_13943211	F022442	VTFLPAGEARLDLYTDAMLLDIGRDTFVVPLARLADLTAHRRHEVAVSRRYWGDAPGKFCDVEQGIWLRRSQTGRSLMLIEQGCVYSIPVYLVLEVKDGIRESCTISMLVTDARQLDDAHSRQTVLEV
draft_1394598	draft_13945981	F015738	VPESDRPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPESGRIEGMSWCLHFDRPIDHRLVKEDRPACIEERHGCGNCPESTYRVHRVTDR*
draft_1394937	draft_13949372	F057400	MSRFITWSAIIVVTIALVFCGLYWSQTVKIRQNITSQSDEEYILMILKQKGADDCVLRPISEGVWSCTEFKTGKIFMVRR*
draft_1399096	draft_13990962	F003987	MIPALPCGTFSDGDTPAGAFYVAAFEDSDQPHHVTECRIETVLRALRAIQACGYDDVEIGSIERGGKTHLLLIGLDGEARFGDRQLGCIAVLPVEVE*
draft_1402605	draft_14026053	F015738	MPDPDRPSPVMWAKVDTDLYQDLEDAIGEVFPGEPDRVRLAAVKVWGIVMSRVPASDRIEGMSWCRHFDRAIDYRLVKIDRPPCIEEHNGCGNCPECGYRASRSG*
draft_1404204	draft_14042044	F031138	MTKRYNCVGPCATACKPGAGTDAQNGTFDRIIVAAAEHAAREAGLPGRADRMIACRSCGCETTADRICPDCAEALRVERAAALDEQCRVHRVRYVEDLPVSVLEEMQAEWGRC*
draft_1406145	draft_14061453	F089495	MGRPYLRKKHVTISLYDGTSPTPYTESITGYADVPELPEPVVDAPAEGYSPQGVFNSIEEGDDTITLPEFSITLDINDADVASGKYALDQWFNNHKESSGATALVSTNDGSAYLKKAIDGTTVSANLATDWFTIGMKVIFDTGGTGKAFGKNYKYVRPISASFSTSNKAQVTLRAQIVGAPTDITSSS*
draft_1410352	draft_14103526	F082738	MKTNAKGRRCAPTVTERRLEQIPGKGTAYIRENTPNPRLTRPEDYGWTEITDAEIAKFARLGYDIWYKTASTGGAHRVYRSLKKAGK*
draft_1414758	draft_14147589	F017851	MTPSLSEQFYSTFHPEVARGFLEGDRLRIHAVKVSVVREGNTVGFAIDTLNRDGRPAEWERTTQKIGRILKSEVERMPRETKQALIAVAHILPDDEPLLLFQIETWLSMQDGGGSWWEVPAYLSLAAISLPDVVKAAERAKKRVLRVVCRI*
draft_1414845	draft_14148454	F091072	MAGIMKEAVAPVREETEEEIRTLLEGAQAAWAQYKQGQGVRITSTKELDAFLDSL*
draft_1415788	draft_14157881	F090426	KMIATGLLDAITCVMLPSGEADIPECDIDRALRAAQGKPVFDWD*
draft_1417572	draft_14175724	F017851	MTPTLSRQFFETFPPEVARAILEGRPLRIHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
draft_1417572	draft_14175726	F018746	MRPTSETLNDFEAAVLAALAQSPEKTVLAADLVREFSTRASRSSCISRIELMERRGLVRTSRFAGRILIHPPVEE*
draft_1418397	draft_14183974	F063807	MKPPRTLSISAALHTRLWLLKIRRNARTLEDVVEQALDALEEQEANDG*
draft_1419371	draft_141937111	F071368	MDSLPHPVTATDAYLARIVQQNDEIIALMKTLGERPKTRRLKEPKP*
draft_1419371	draft_14193714	F033857	MVEIIDLTTLSPKTVIVRIGNGDEIEEIDLTIVPARGTLLLAQATQKHGGWDKIPDDEMIPAIAAICQQSNPKITAEWLETKLTRPQLAGLTQVVIAQAFRRWGNGQDDGKEGDEKNR*
draft_1419371	draft_14193718	F045124	VTDDGLRQMVYETRQDVRWIKDTLREIKEANQAQDERINEIKARQDSQTGRDGALAAIVSMVVAFFTALASGGWLR*
draft_1420417	draft_142041714	F100040	MIEEILEDAMTNKRVRPDLEKMISLGRKGIIDPDHMKRWGEFKKEWAEADLIIWNKLKKRMATGDSGSLELRPPLSPSEKEWAKKIIMQAEEKNLC*
draft_1420439	draft_142043913	F101218	MSKQGPKPDLPRVKEPPPLPSLDELIAESRAFGWDDLADSMEKLRHLETPEGQKALERREKRLSGL*