3300002495: 454 Fosmid Sequence

Overview

Basic Information

• IMG/M Taxon OID: 3300002495
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110103 | Gp0089055 | Ga0023007
• Sample Name: 454 Fosmid Sequence
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108562359
• Sequencing Scaffolds: 32
• Novel Protein Genes: 34
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria	6
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SS-5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mangrove Soil Microbial Communities From Bertioga, Brazil, Sampling Enzymes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated Sediment → Mangrove Soil → Mangrove Soil Microbial Communities From Bertioga, Brazil, Sampling Enzymes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Bertioga - SP
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001314	Metagenome / Metatranscriptome	725	Y
F001436	Metagenome / Metatranscriptome	695	Y
F001965	Metagenome / Metatranscriptome	610	Y
F002203	Metagenome / Metatranscriptome	584	N
F003187	Metagenome / Metatranscriptome	502	Y
F005490	Metagenome / Metatranscriptome	399	Y
F009818	Metagenome / Metatranscriptome	312	Y
F010394	Metagenome / Metatranscriptome	304	Y
F010721	Metagenome / Metatranscriptome	300	Y
F011352	Metagenome / Metatranscriptome	292	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BRMGV_1004388	Not Available	769
BRMGV_1006248	All Organisms → cellular organisms → Bacteria → Proteobacteria	3306
BRMGV_1012930	Not Available	648
BRMGV_1013478	Not Available	562
BRMGV_1018209	All Organisms → cellular organisms → Bacteria	1553
BRMGV_1022352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2262
BRMGV_1025655	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2420
BRMGV_1026476	Not Available	790
BRMGV_1027670	All Organisms → cellular organisms → Bacteria → Proteobacteria	1474
BRMGV_1028425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2724

Sequences

Scaffold ID	Protein ID	Family	Sequence
BRMGV_1004388	BRMGV_10043882	F091661	MQGTRDIHQTAGSDDGNGLDPREAARLLVQTEREAQRQFSLSPLWITAVMGAIVLVAYGALWFSTRAQHPYIGPSLGVVGLVYAVVAVAIAASVKVYRRATAGVRGLSVRQQQAEGV
BRMGV_1006248	BRMGV_10062483	F029006	MNKINIALMAIYFLGDPDLQYLSWLGDLKLYVVAAALSLVSMPWIAKQLDG*
BRMGV_1012930	BRMGV_10129301	F003187	MKKFLVLVCSVILAIGVAGCAGKGKVPIGKGKAPVVHTKG*
BRMGV_1013478	BRMGV_10134781	F071915	LELGHMAELTEAMLARVKAAFVTRDFTDLSQQNDQVVVLRDAVLGYLQRVGRGQLSDAESDEHARLVAATGDIENMSVAISRELAPLARALKDAGITPSDETRALFERLFETIREASQSALKALVDSDERAAQAVVACRDTVWNLASELHRQQAARLARDDPERLPQAPRAGGHTGQAASRVQCRR
BRMGV_1018209	BRMGV_10182091	F011939	MILSEMKNRKDSKMTEKTINKIEEVLRKEVQKIDQSVQVVAVEQGKKKNSYRVTLLKEGKSASADLQKDLIEQHLAQKGQGRQLRKALAKAVSHLSIRYGR*
BRMGV_1022352	BRMGV_10223523	F011352	MARYFFRLTDGNQVLNNHKGIDLPGPAAAREDAVALARDLRLGAVMPGFKWGGWFVLVVDERGHKVDEVPVGDEVGER*
BRMGV_1025655	BRMGV_10256551	F048676	AIFKFAVDTRKMLFRYAAYAAASDAVDAVKLEILKGFKLLKSKMTEYLKNIIKLNILKI*
BRMGV_1026476	BRMGV_10264762	F010394	MGEMHRPGRPATGDVRRWQADFEELELRMDALRQAFTEGIRSYEMTEEIVERIHARFDDVGEQVHAMHCTYPFGGWPGQEVCRFEPPVQKNEARPGRA*
BRMGV_1027670	BRMGV_10276702	F001965	MRRSIYKGCLGLAALCVTSATSYAEKSYLCAVNEVYECVAVTGCSRVSLKDANLAGVMLLDVEKKQLSLAPLGGDARTDDIEGLTVTDDAILLHGTGKSKKDRTWSAVISLKTGNLSAGVSTLDSSLALTGTCSAKP*
BRMGV_1028425	BRMGV_10284252	F089563	MATLLTSRPKRFYQRGTVACQKCAAPIYIYKLKALPDEFSLRCSKCGARGFYAARAVVVEDMPERRKKPRK*
BRMGV_1033187	BRMGV_10331872	F082105	VLIGRDPPRCAGQPNATVQPAVAGTVMPIDSVGSGRVNEKK*
BRMGV_1036475	BRMGV_10364751	F001314	MWVLFRVPCPTSAGETAEDLYQKRVEGITVAMQESARELGCRFHRAWYADDGSEFITIANWDSREGASEFFQRWQIEDEEGETATFLEGDVGLVPLV*
BRMGV_1036900	BRMGV_10369001	F062769	MTDLSTFSAWLVSATRSAILVVRERVHQARRQNPAQRSEANALLKRITQELAARGEYDRRCAA*
BRMGV_1038803	BRMGV_10388032	F071910	MRRIVVAALIAALLGAFGLALGRSAANAVERAVERHASSVERALSL*
BRMGV_1042465	BRMGV_10424652	F046383	MKLRFISLVLGVLLGSALIPASALACEPEQDGCLGCDDEELPVCLQAFVMEICQASGSPNNCDSVRAYDDVERYVLISTGSHMSRIRSMVRSARKYQLH*
BRMGV_1043799	BRMGV_10437992	F076890	MVKTCKQSAAVVVIAAFGLFATACSTLEVSDYCRHSEERSIREADPETLGLVLGLEARQAMETPFVIVRSLSEKNPGASLTLHATPAAHPIPVSLDESRCARIDWGTYTLTVDPDEWNAFWQDDRNARFEIAIAFLGDSRPLLVSSFGAAIVDTAAAEALVSCGCYWN*
BRMGV_1053473	BRMGV_10534734	F010721	MQHRRRVFVETPKGRISAGFSVPVTAAAADVSMRLRERGRAPYRVRFDREQDCWIAAVIDWRRAA*
BRMGV_1053502	BRMGV_10535023	F009818	MPEIYPKVTRATLKKGAKRTSEGKGRVALPGVKTDAKHVNATDKCGYKANRELAEMISKAVEAKKSADKNGAHFVLGWRLYPNRGHPRWKRKDVHSCGCGCGCSS*
BRMGV_1054348	BRMGV_10543482	F012756	MRIRSAKIEELKPKPKERALSPRQLAALKRDDEIRRALGRLKSDDDIIAIELDKSEKVPTMRAAVKKAIAAHRPGTNMAIRGTTIYLSTGKLPGGRGRRPKAG*
BRMGV_1056078	BRMGV_10560782	F087388	VAKTVSELAREIIHRLDHGEPLESAISMVLAGEEVDEQVLAELQMAGLRDAVVHEAFHELLDWHASFGGLAEFLEIDEAIHRTAERIGHDFDQDMPEHVPDSGPRLVH*
BRMGV_1058064	BRMGV_10580642	F054877	MKVFRNLRVLARFSPRTTDDLDPDLLNLVGTDAVFSYHKFVDDEDTPYANQWLLTSEDQRFGEYWYPESDLEILRVMRSAQG*
BRMGV_1061743	BRMGV_10617433	F049002	MAKTKLDEAQAELTRAIENDAPCTFDEPIPVLVTLDNGVKYEGVAIKVEPADNVFPRGLVMVRTGNTDIGVPVNYIKGK*
BRMGV_1061872	BRMGV_10618722	F074893	MMASNGLQATANNGALTIRITGPMDLLLTSALREFCHETGAVYRRYIIDLQDVSIVRDSGLALLLMLKRLASRTGATLHVINGSSDLMRRCLRLGISPY*
BRMGV_1063454	BRMGV_10634541	F069422	LINPRHCKRGDCVPRNANIRILAQSGGWYSVDIDEDGHPDGYVRASDLTSDLATMPPWERS*
BRMGV_1066339	BRMGV_10663391	F045025	NPDAYALIPKDIAVQLPTYSGNVEVSVKEDDVWEADRITQIEERFTQWLAS*
BRMGV_1080626	BRMGV_10806262	F037757	LQTYIRRHAPFWLSLIAGLAIWEIAGRSSSPAFMVPFSETLVRLWQLINGGGFVPAFIDSSQLFITGFV
BRMGV_1091881	BRMGV_10918811	F034415	GTMTSLGHKKSAGLVEGEAYRRIMAGEAPETLAEFAEQLLDWLATSYPEASSMTRAAVEDQIRDTWHRRHELILGGGI*
BRMGV_1093851	BRMGV_10938511	F103505	MDPMLLREYQTKLGDWLAQGYQLMVDDIDGELRITVLFVSPGTAAAKEREQEFWPQTAEIVQLLSDNGVTISKALAGPRPWAGPHPEDR*
BRMGV_1095617	BRMGV_10956171	F005490	IPVEQLLKDARRLGSVGTFFITLGWIAVIYALVAGLLWWIDLASRDAFNILEAFAISASAVGLPIFGAFVLAGLGYALRLFALYVASKAG*
BRMGV_1096866	BRMGV_10968663	F001436	MAIGKDIAPLLELLKMEADYWPHSGAGEVSPDESFRRDQFLLKIWPEACRRTGVGTREFPPELINLWKGGLGHSN*
BRMGV_1103520	BRMGV_11035204	F002203	VQTRREAVILMTAIPLLSTHAAAQPDRLDALFNRPAENLSVPSRVRQRYAILAYYIQLLNLQGPMRSREDIAAAIKTYQLVGESIARSDARFEGEVQASFVQSLREAFSKSEEELRAFLRQVGIDPRLLAASVIEESLASNMLFYGAETRVTNVSDMVWCCFPFCFRRPT*
BRMGV_1104680	BRMGV_11046803	F019895	MQSQIENYRAKAKEFARLMIVAKSLRHSRQYRKLAEMYWALALGEESDRAEPSKTYVKRNAT*
BRMGV_1110551	BRMGV_11105511	F011594	MTPTEFQKLLLMADSMSSSCAPRKSDYGKGYHMGIQIHFSNTHRGSLPDHYSIAEIARSNGCRIVHAFARGYIDGYMGLKPEYSG*
BRMGV_1111656	BRMGV_11116561	F049640	MERRMINVELLPHERAALLKGNFTIDEVCEQLEACASSSDVETITFTATDIHFLAGDLTHAIVKRGCRDQDVVDLSERLDYVDETGDGSLDGWF*