Sample 3300002104

Basic Information
IMG/M Taxon OID	3300002104 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0056896 \| Ga0005054
Sample Name	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002104 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053054 | Gp0056896 | Ga0005054

Sample Name

Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	604335938
Sequencing Scaffolds	32
Novel Protein Genes	35
Associated Families	29

Dataset Contents

Total Genome Size

604335938

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	8
All Organisms → cellular organisms → Bacteria	8
Not Available	7
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas → Serpentinimonas barnesii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas → Serpentinimonas barnesii

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Ecosystem Assignment (GOLD)

Name

Soil Microbial Communities From Rifle, Colorado, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Rifle, Colorado, United States

Coordinates

Lat. (^o)

39.53

Long. (^o)

-107.78

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F001115	Metagenome / Metatranscriptome	774	Y
F007269	Metagenome / Metatranscriptome	354	Y
F007341	Metagenome / Metatranscriptome	353	Y
F018055	Metagenome / Metatranscriptome	237	Y
F018649	Metagenome / Metatranscriptome	234	Y
F023933	Metagenome / Metatranscriptome	208	Y
F030514	Metagenome	185	Y
F034495	Metagenome	174	Y
F036533	Metagenome / Metatranscriptome	169	Y
F039292	Metagenome / Metatranscriptome	164	Y

Scaffold	Taxonomy	Length	IMG/M Link
C687J26621_10002599	All Organisms → cellular organisms → Bacteria → Proteobacteria	9812	Open in IMG/M
C687J26621_10017774	All Organisms → cellular organisms → Bacteria → Proteobacteria	3075	Open in IMG/M
C687J26621_10020228	All Organisms → cellular organisms → Bacteria → Proteobacteria	2813	Open in IMG/M
C687J26621_10025541	All Organisms → cellular organisms → Bacteria → Proteobacteria	2408	Open in IMG/M
C687J26621_10025762	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
C687J26621_10030244	All Organisms → cellular organisms → Bacteria → Proteobacteria	2146	Open in IMG/M
C687J26621_10032453	Not Available	2046	Open in IMG/M
C687J26621_10033236	All Organisms → cellular organisms → Bacteria → Acidobacteria	2013	Open in IMG/M
C687J26621_10035054	Not Available	1943	Open in IMG/M
C687J26621_10035213	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C687J26621_10002599

All Organisms → cellular organisms → Bacteria → Proteobacteria

9812

Open in IMG/M

C687J26621_10017774

All Organisms → cellular organisms → Bacteria → Proteobacteria

3075

Open in IMG/M

C687J26621_10020228

All Organisms → cellular organisms → Bacteria → Proteobacteria

2813

Open in IMG/M

C687J26621_10025541

All Organisms → cellular organisms → Bacteria → Proteobacteria

2408

Open in IMG/M

C687J26621_10025762

All Organisms → cellular organisms → Bacteria

2393

Open in IMG/M

C687J26621_10030244

All Organisms → cellular organisms → Bacteria → Proteobacteria

2146

Open in IMG/M

C687J26621_10032453

Not Available

2046

Open in IMG/M

C687J26621_10033236

All Organisms → cellular organisms → Bacteria → Acidobacteria

2013

Open in IMG/M

C687J26621_10035054

Not Available

1943

Open in IMG/M

C687J26621_10035213

All Organisms → cellular organisms → Bacteria

1937

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J26621_10002599	C687J26621_100025999	F018649	DELHRAHGNRKRATPSNFAPEDFDWLRRVRAATDAKRDPPPVPAAIARKLCGFGFVTLSGRHGLQISDRGRDALLEQDMRDAEER*
C687J26621_10017774	C687J26621_100177744	F068109	MIEALQQIGFRDVRACHYFNSFSGTTKEGVARKYGVQGANFVAYKAA*
C687J26621_10020228	C687J26621_100202283	F068109	MIEALQKSGFRNARACHFFDSFLGTTKEAVARKYGVRGANFVAYK*
C687J26621_10025541	C687J26621_100255412	F018649	LKRKGATHPNLTPGDFDWLRKTRAATDAKRDPQPVPMEIAVKLRAFGLVTPNGRSGLAITGRGREALLEQDMRDAEDR*
C687J26621_10025762	C687J26621_100257623	F007269	MKNIFFAALFLQLLVFALMAPGLRADEKREFISKRMNSDVQKLWKNSGREIIGEEPFSSRNNNIMDYMIGFYNTDHGLLVTLQALKQRLDEYEHAIPDVYSSELVAVVFVDKLLXWYKSETAKSTLKVEMARLIGKQSI*
C687J26621_10030244	C687J26621_100302445	F104090	MSTNLRVRPTLLRELGKIAAKSDQDVADLAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA*
C687J26621_10032453	C687J26621_100324532	F050649	MGRWIAIGRAPGWDDLKRFGXELKXTNQWRVDPRTTITSVYALGDGRMVAECHGPSQAEFDEWLRKKGWTVESVTPVRFVAKAGDIWNVG*
C687J26621_10033236	C687J26621_100332362	F075129	MAKAKRSHEYDAFTELVDRVLAVPNSVIKGRVEKHRKRAALNPNRPGPKKSGKPLKL*
C687J26621_10035054	C687J26621_100350541	F068109	QVAEMIEALQKSGFRNARACHFFDSFLGTTKEGVARKYGVRGANFVAHK*
C687J26621_10035213	C687J26621_100352132	F050649	MGRWIAIGRAPGWDDLKRFGAELKNTNQWRVDPRTTITSVYALGDGRMVAECHGPSQAEFDEWLRKKGWTVESVTPIRFVAKAGDIWNVG*
C687J26621_10050743	C687J26621_100507434	F079374	MPRRASAKDKEHGLPSLALVFGYIAVKDLQRLEDRIAVLNRLGYGNAEMALICDTTPGSISTLKSRGAARRRTRR*
C687J26621_10067896	C687J26621_100678964	F064237	MKVSEPVIIVRRVVAAKRRAAGRRIAANIRRLQKTRTTRTAAQALAEARGERLAR*
C687J26621_10068325	C687J26621_100683254	F007341	PSAFRHGYAEQDFYELLAGHYLKIRSQRGLEDVYELLGRNLGGDYLHIVYRVLPDRRLRVFHISRMSEKQXRRYQRYQR*
C687J26621_10072862	C687J26621_100728622	F090572	MKRHTVIMPFNLPRLTDKAAAQFIELLQQLFADIEHHYAEQAHRYRKHQQEIQYHRQAPSSRPTDPPF*
C687J26621_10079491	C687J26621_100794911	F064237	MKLTEPVIVARKVLPAKRRASGRRIAANIRRLQRIRGTRTAGQALAEARGERLAR*
C687J26621_10086570	C687J26621_100865701	F048881	QLPEEVAAETKGEKHGNKDAKGNRVGSKVPVSNVPLPAHVPDAPTETQQMPLEYRGIIR*
C687J26621_10099669	C687J26621_100996693	F034495	MRHLEKLFDLSLRYVFEPGLNWVIDHPVVAVVAVVGLVYWSVRGYRMI*
C687J26621_10114293	C687J26621_101142932	F068109	MIEALQQIGFQDVRACHFFNSFSGTTKEGVARKYGVQGANFVAYKAA*
C687J26621_10134004	C687J26621_101340043	F049729	MRTNGESKFSFLLIGLGLGAIGGPMSAPLRRKETRELLRGRSNKGLDYLNQQTGKLRESPEVTVKKGKEFIGPHCDSVKTDTEAQKQAYQEEMREHLGG*
C687J26621_10152081	C687J26621_101520811	F081001	AYEISSEKVKHRAERRAQNETFAPMPSFLQGHTSINKVSSGFLVA*
C687J26621_10154873	C687J26621_101548732	F030514	VKRVVRALIRSLDFMHAQPADVKSLIQKRLGASETPIVDHIYALVTKYAARNGIPSQKAIENTLLGTPFKGKLTNFDKLTDFSMAREVAEGK*
C687J26621_10157075	C687J26621_101570751	F039292	MKDAVQRINVEYGLNLTEEEIEIITKQVEAGKRLFQKLYEVDVEGVVPALKIDPAERP*
C687J26621_10172519	C687J26621_101725191	F087944	RRTRAMAVAAAIPWAVILKALPTVVVTAKELWNHWSSRPKTAPVDPNADVKTQLASVAERLVALESAETDQAKLISQIAEQLQGIARRASVAYWLGFSGLLLSCVALLLAAFR*
C687J26621_10179554	C687J26621_101795542	F040284	LALFFHSDDVDHLIPFKEAVAIAENALKDMVSSAGVNAPRKRLNLHRKVGEGQFDTVLNVYAGGSANYGAVGAQVALHRKAISGMTQRR
C687J26621_10179833	C687J26621_101798331	F018055	MGQYNNHPIYGIGVRGLGKKWSCKGLIFDPDDKVTEIKSLEPTELTFATKKKAEDHALKLCKIWIDEQSGGIVSSGLTPSAPLKADASAI*
C687J26621_10192892	C687J26621_101928922	F043032	MKIFFFDIETVPTEQSLQDNGLLESQIKLDEAELLKKLSLSAATARILCLA
C687J26621_10194039	C687J26621_101940391	F054696	PAWKHERRQLRVMTSMHLDILPGRQGWKVGRSRWTIENGTFNRLTRDYALEHNYRHSVPAIVGLLAMRSFACLLTQAYWRAAIARSKNAPNRFVKWFQDIIVEDWVRYLDQALTEPGCRSG*
C687J26621_10198146	C687J26621_101981462	F084764	MANLLYKDRFIVNFARFDETTAFWIPMVDVNWGTNGLRESHTITGPLVQFKNWQDAERFMTEMAKAWIDDNP*
C687J26621_10199855	C687J26621_101998552	F023933	MSKQVSFSSTEGLLSIRVPKKLAGKKVVLVEAEEYARMKQRLAEIEDTLEKIARGEAAYRQGRTKTVRSLSELGR*
C687J26621_10202116	C687J26621_102021161	F045635	TRQFLQETSLFEKSVSARDLENLEEALAAIIRNPNLPGRLPSFYDPSSPSHLYRSGNLLIHYRVTESDVVEFLNLFWPRV*
C687J26621_10215405	C687J26621_102154051	F097998	VALFFHSDDVDHLISLKEAVAIAESALKDIPLRAGVNAPRKRLNLHRNGGEYP
C687J26621_10222280	C687J26621_102222802	F001115	MKNELHNLTEDISRLYEDITQKTESLGQIDSITRLYDELQAQLXSISAEEIDLLQSQIRSTLEQMVGISKSLAVIKTLKVTFSDHNDMNEFAKKLQEPTSTRRSMEDR*
C687J26621_10239172	C687J26621_102391721	F086760	QRASVGKEEMEQALADLQAQGVVMIRDNFCADPHLAGVDLRVVALVESIDGADPQLSAIRLIDDAWNKWLGEYLSNHRCG*
C687J26621_10245045	C687J26621_102450451	F036533	ATDMLSWTRSAARLSEARRPRGPRRFARVGLVAAWAIFWLNTALFPCSEVAAAVLGGHTGNGPQSASAAPPLHYSDVTYSEPLGSSPDSPCGTTLISGPPLVGEYEVLTLDRSPLKWFAVDAPVATILAAANRSANLALAQSALPPSLRLYLRTQRLLI*
C687J26621_10257244	C687J26621_102572442	F044381	MALLKKNTSQLQTQESDIHKALRAWYLTPGIQRDLRNRENEAVQTVLEVLERRRVAAHKTARPDTPSATTKPK*

Showing 1 to 35 of 35 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002104: Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences