Metagenome / Metatranscriptome Family F104090

Overview

Basic Information

• Family ID: F104090
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 101
• Average Sequence Length: 76 residues
• Representative Sequence: MSTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSSKANVRRLRSAHAEIETEIARRRRKAA
• Number of Associated Samples: 84
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 12.87 %
• % of genes near scaffold ends (potentially truncated): 21.78 %
• % of genes from short scaffolds (< 2000 bps): 73.27 %
• Associated GOLD sequencing projects: 76
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (71.287 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.861 % of family members)
• Environment Ontology (ENVO): Unclassified (32.673 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline) (35.644 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 58.65%
  β-sheet: 0.00%
  Coil/Unstructured: 41.35%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF06769	YoeB_toxin	21.78
PF08386	Abhydrolase_4	7.92
PF13744	HTH_37	5.94
PF03401	TctC	2.97
PF01402	RHH_1	2.97
PF01850	PIN	2.97
PF01381	HTH_3	2.97
PF02452	PemK_toxin	1.98
PF00561	Abhydrolase_1	1.98
PF04255	DUF433	1.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	Defense mechanisms [V]	21.78
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.97
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.98
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	1.98
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.98
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.99
COG3555	Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.99
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.99
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.99

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.29 %
Unclassified	root	N/A	28.71 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.29 %
Unclassified	root	N/A	28.71 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.29 %
Unclassified	root	N/A	28.71 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.98 %
Unclassified	root	N/A	28.71 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	14.85 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Unclassified	root	N/A	28.71 %

Level 6

Name	Rank	Taxonomy	Distribution
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.99 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	2.97 %
Unclassified	root	N/A	28.71 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.99 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.97 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.99 %
Betaproteobacteria bacterium RBG_16_66_20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_66_20	1.98 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Rickettsiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae	2.97 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1.98 %
Unclassified	root	N/A	28.71 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.99 %
Betaproteobacteria bacterium RBG_16_66_20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_66_20	1.98 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Rickettsieae	tribe	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae	2.97 %
Synechococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae	1.98 %
Unclassified	root	N/A	28.71 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.99 %
Betaproteobacteria bacterium RBG_16_66_20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_66_20	1.98 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Rickettsia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia	2.97 %
Synechococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus	1.98 %
Unclassified	root	N/A	28.71 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.99 %
Betaproteobacteria bacterium RBG_16_66_20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_66_20	1.98 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Rickettsia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia	2.97 %
Unclassified	root	N/A	28.71 %
unclassified Synechococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus	1.98 %

Level 11

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26	0.99 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.99 %
Betaproteobacteria bacterium RBG_16_66_20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_66_20	1.98 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Rickettsia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia	2.97 %
Synechococcus sp. BDU 130192	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. BDU 130192	1.98 %
Unclassified	root	N/A	28.71 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000574|JGI1357J11328_10005023	All Organisms → cellular organisms → Bacteria	8569
3300000574|JGI1357J11328_10079897	All Organisms → cellular organisms → Bacteria	1102
3300001199|J055_10104246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1110
3300001380|JGI1356J14229_10014065	All Organisms → cellular organisms → Bacteria → Proteobacteria	5226
3300002104|C687J26621_10030244	All Organisms → cellular organisms → Bacteria → Proteobacteria	2146
3300002121|C687J26615_10020746	Not Available	1611
3300002124|C687J26631_10303303	Not Available	527
3300005171|Ga0066677_10333536	All Organisms → cellular organisms → Bacteria	868
3300005446|Ga0066686_10078167	All Organisms → cellular organisms → Bacteria	2089
3300005559|Ga0066700_10393212	All Organisms → cellular organisms → Bacteria → Proteobacteria	978

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.99%
Environmental	Environmental	99.01%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	48.51%
Terrestrial	Environmental → Terrestrial	50.50%
Wastewater	Engineered → Wastewater	0.99%

Category

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.99%
Cave	Environmental → Terrestrial → Cave	3.96%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.99%
Floodplain	Environmental → Terrestrial → Floodplain	1.98%
Freshwater	Environmental → Aquatic → Freshwater	33.66%
Marine	Environmental → Aquatic → Marine	0.99%
Peat	Environmental → Terrestrial → Peat	0.99%
Sediment	Environmental → Aquatic → Sediment	13.86%
Soil	Environmental → Terrestrial → Soil	42.57%

Type

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	9.90%
Lake	Environmental → Aquatic → Freshwater → Lake	14.85%
Loam	Environmental → Terrestrial → Soil → Loam	6.93%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.99%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.95%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.98%
Sediment	Environmental → Aquatic → Marine → Sediment	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	3.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.99%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.97%

Subtype

Habitat	Taxonomy	Distribution
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	6.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.97%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.86%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	5.94%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.95%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.99%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.99%

Habitat

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.99%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.99%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.98%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.99%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.98%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	2.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.99%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.99%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	6.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Lotic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic	0.99%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.99%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.99%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	7.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.98%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.99%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.86%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.99%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.98%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental
3300001199	Lotic microbial communities from nuclear landfill site in Hanford, Washington, USA - IFRC combined assembly	Environmental
3300001380	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m	Environmental
3300002104	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2	Environmental
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1357J11328_1000502310	3300000574	Groundwater	MASILRLRPTLLRALGKIAQEADQDVSALAEDALRQFVRSHRETVHLTRSRTNVRRLRPAHAEIEAEIARRKRQAA*
JGI1357J11328_100798973	3300000574	Groundwater	MNTILRLRPALARQLDKIAAESNKDMSSLADDALGQFVRSHRETVYVTSTRANVRRLRAAHVEIEAEIARRRREAA*
J055_101042462	3300001199	Lotic	MSTNLRVRATLLRELGKIAAKSDLDVSELAEDALRQFVRSHRATAHLTSSKANVRRLRAAHAEIETEIARRRRKAA*
JGI1356J14229_100140656	3300001380	Groundwater	MLFMSTILRIRPALARQLDRIAAESNKDMSSLADDALSQFVRSYRETIYVTGTRANVRRLRAAHAEIEAEIARRKRQAA*
C687J26621_100302445	3300002104	Groundwater	MSTNLRVRPTLLRELGKIAAKSDQDVADLAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA*
C687J26615_100207462	3300002121	Soil	MNAPLRVPPALLRELEKIAAESRRDLSELTADALRQFVRSHRETVHLTRSRTNVRRLRAAHSEIEAEIARRRRAAS*
C687J26631_103033031	3300002124	Soil	MSTNLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLIGSKANVRRLRSAHAEIETEIAXRRRKAA*
Ga0066677_103335362	3300005171	Soil	MNTTVRLRPALARQLSKIAAESNRDVSSLAEDALRQSVNSHRETVRLTRSRANVQRLRAAHAEIEAELARRKRQRLPGTAET*
Ga0066686_100781674	3300005446	Soil	MSTILRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTRANVRRLRSAHAEIETEIAKRRRKAA*
Ga0066700_103932122	3300005559	Soil	MNTTVRLRPGLARQLSKIAAESNRDVSSLAEDALRQFVNSHRETVRLTRSRANVQRLRAAHAEIEAELARRKRQRLPGTAET*
Ga0066798_102095692	3300005980	Soil	RQLGKIAAESNKDVSSLADDALSQFVRSLRETVYVTSTRSNVRRLRAAHAEIETEIARRKRQAA*
Ga0075023_1001974412	3300006041	Watersheds	MSTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTRANVRRLRAAHVEIETEIARRRRKAA*
Ga0075030_1000480134	3300006162	Watersheds	MSTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA*
Ga0066797_12703391	3300006864	Soil	PVWTRRYPPRVSPSVARPSDDDRMVLMNTILRLRPTLARQLDKIAAESNKEMSALADDALRQFVRSHRETVHVTSTRANVRRLRAAHAEIEAEIARRKHQAA*
Ga0066793_101335402	3300009029	Prmafrost Soil	MSTILRLRAALARQLGKIAAESNKDMSSLADDALSQFVRSHRETVYVTGTRANVRRLRAAHTEIEAEIARRKRQAA*
Ga0099829_104559213	3300009038	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRRAA*
Ga0105106_102769702	3300009078	Freshwater Sediment	LKELGKIASESNRAVDDLARDALRQFVRSHQETVRLTRTKANLRRLRAADREIEAELARRRRGAA*
Ga0105106_103979793	3300009078	Freshwater Sediment	MRFMSTTLRLRPALARQLGRIAMESNKDVSSLADDALSQFVRSHRETLYVTSTRSNVRRLRAAHAEIEAEIARRKRQAA*
Ga0105107_104855662	3300009087	Freshwater Sediment	MRFMSTTLRLRPALARQLGKIAMESNKDVSSLADDALSQFVRSHRETLYVTSTRSNVRRLRAAHAEIEAEIARRKRQAA*
Ga0099828_107547862	3300009089	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRQGLPGTAETQ
Ga0099827_107359992	3300009090	Vadose Zone Soil	LVPIGKKADDRIAFMNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRRAA*
Ga0102851_135249332	3300009091	Freshwater Wetlands	MNTTVRLRPALARQLGKIAAESNQDLSSLAEDALAQFVRSHRETVHLTGAKANVRRLREAHAEIEAEIARRKRRAA*
Ga0066709_1044909291	3300009137	Grasslands Soil	MSTILRVRPTQLRELGKIAAKSEQDVSELAEDALRQFVRSHRETAHLTSTRANVRRLRSAHAEIETEIAKRRRKAA*
Ga0099792_106788671	3300009143	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRQRLPGTAETYP*
Ga0114940_101794611	3300009448	Groundwater	TMNTNLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTRSKANVRRLRSAHAEIETEIARRRHRQV*
Ga0131077_100587795	3300009873	Wastewater	MNAPLRVPAALLRELEKAAAESRRDPSKLAEDALRQFLRSHRETVHLTRSRANLRRLRAAHAEIEAEIGRRRRGAA*
Ga0136847_102995191	3300010391	Freshwater Sediment	MNTNLRVRATLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA*
Ga0137391_108674702	3300011270	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRQAA*
Ga0137393_117894032	3300011271	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVHLTRSRTNVQRLRAAHAEIEAELARRKRRAA*
Ga0137443_10676482	3300011433	Soil	MSTTLRVRPTLLRELGKIAALSDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA*
Ga0137458_10514642	3300011436	Soil	LRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLIGSKSNVRRLRSAHAEIETEIARRRRKAA*
Ga0137463_10204663	3300011444	Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAEIARRKRHAA*
Ga0137322_10396872	3300012146	Soil	MSTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKA
Ga0137388_111871822	3300012189	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIE
Ga0137364_105128003	3300012198	Vadose Zone Soil	MNTTVRLRPALARQLSKIAAESNQDVSSLAQDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRQAA*
Ga0137380_100051964	3300012206	Vadose Zone Soil	MNTIVRLRPALARQLSKIAAESKQNVSSLAEDALRQFVRSHRETVHLTRPRANVRRLRAAHAEIEAEIARRKRQAA*
Ga0137387_100227151	3300012349	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRQGPQGTAET*
Ga0137390_107106943	3300012363	Vadose Zone Soil	MNTTVRLRPGLARQLSKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRHAA*
Ga0137396_103749764	3300012918	Vadose Zone Soil	EKSADDRIASMNTTVRLRPALARQLSKIAAESNRDVSSLAQDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRQGLPGRAET*
Ga0137416_113269372	3300012927	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRRVA*
Ga0153915_114263912	3300012931	Freshwater Wetlands	MNTTLRLRPTLVRQLNKIAAESKQDLSSLAGEALAQFVRSYRETVHLTSSKTNVRRLREAHAEIEAQIARRKRRAA*
Ga0153915_117516211	3300012931	Freshwater Wetlands	MTITVRLRPALARQLGKIAAESNQDLSSLAEAALKQFVRSHNETVHLTATPANLRRLRAAHAEIEAEIARRKRRAA*
Ga0163199_11640121	3300013092	Freshwater	MASILRLRPALLRALGKIAQEANQDVSALAEDALRQFVRSHRETTHLTRAKTNVQRLRSAHAEIEAEIARRKRQAA*
Ga0180060_10599471	3300014863	Soil	TILRVRPTLLRELGKIAAESDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA*
Ga0167650_10305582	3300015203	Glacier Forefield Soil	MTANLRVRPALLRELGKIAAESKQDVSELAEDALRQFVRSHRETLHVTSSRANVRRLRAAHAEIETELGRRRRQAA*
Ga0167650_10365981	3300015203	Glacier Forefield Soil	VSHRVDQTMTTTLRVRPALLRELGKIAAESKQDVSELAEDALRQFVRSHRETAHLTSSRANVRRLRAAHAEIEAELGRRRRKEA*
Ga0180089_10865452	3300015254	Soil	MSTILRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHREAAHLTSTKANVRRLRSAHAEIETEIARRRRKAA*
Ga0163144_108792642	3300015360	Freshwater Microbial Mat	MTSNLRVRPTLLRELGKIAAESKQDVSALAEDALREFVRSHRETAHLTSSKANVRRLRSARTQIEAEIARRRRQ
Ga0134074_12710411	3300017657	Grasslands Soil	MSTILRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTRANVRRLRSAHA
Ga0184637_100177103	3300018063	Groundwater Sediment	MLSKIAAESNQDLSSLAEDALRQFVDSHRETVHLTRSRANEQRLRAARAEIETEIARRKRRAA
Ga0184618_100497242	3300018071	Groundwater Sediment	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRHAA
Ga0184640_101084973	3300018074	Groundwater Sediment	MTSMNTSVRLRPGLARQLGKIAAESNQDVSSLAEDALRQFVSSHRETVHLTRSQTNVQRLRAAHAEIEAEIARRKRHAA
Ga0184640_103243122	3300018074	Groundwater Sediment	IRDAKGLRWGTESPLRVADDRITSMNTTVRLRPTLARMLSKIAAESNQDLSSLAEDALRQFVDSHRETVHLTRSRANEQRLRAARAEIETEIARRKRRAA
Ga0184639_105883782	3300018082	Groundwater Sediment	MNTTVRLRPTLARMLSKIAAESNQDLSSLAEDALRQFVDSHRETVHLTRSRANEQRLRAARAEIETVIARRKRRAA
Ga0184629_106836931	3300018084	Groundwater Sediment	MNAPLRVPPALLRELGKIAAESRRDISELAEDASRQYVRSDRETVHLTRSRANLSRLRAAHAEIEAGIARCRRNAA
Ga0184647_14639691	3300019263	Groundwater Sediment	LARQLGKIAAESNTDLSSLAHDALSQFVRSHRETVCVTATRANVRRLRAAHVEIEAEIARRKRQSA
Ga0187892_100011674	3300019458	Bio-Ooze	MSTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA
Ga0187893_101190582	3300019487	Microbial Mat On Rocks	MGTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTKANLRRLRSAHAEIETEIARRRGKAA
Ga0163151_100098992	3300020057	Freshwater Microbial Mat	MTSNLRVRPTLLRELGKIAAESKQDVSALAEDALRQFVRSHRETAHLTSSKANVRRLRSARTQIEAEIARRRRQAA
Ga0163155_104502541	3300020180	Freshwater Microbial Mat	MTSNLRVRPTLLRELGKIAAESKQDVSALAEDALREFVRSHRETAHLTSSKANVRRLRSARTQIEAEIARRRRQAA
Ga0206227_10957981	3300021063	Deep Subsurface Sediment	MSTNLRVRATLLRELGKIAAKSDQEVSKLAEDALRQFVRSHRETAHLTSSKANVRRLRSAHAEIETEIARRRRKAA
Ga0194060_102062311	3300021602	Anoxic Zone Freshwater	MSTVLRLRPALARELGKIAAESNQDVASLADDALSQFVRSHRETVYLTSTQANVRRLQAAHTEIEAEIVRRKRQAA
Ga0224510_101094003	3300022309	Sediment	MSTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRIAA
Ga0212124_100291605	3300022553	Freshwater	MASILRLRPALLRALGKIAQEANQDVSALAEDALRQFVRSHRETTHLTRAKTNVQRLRSAHAEIEAEIARRKRQAA
Ga0209619_104625521	3300025159	Soil	MSTNLRVRATLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA
Ga0209109_100218698	3300025160	Soil	MSTNLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLIGSKANVRRLRSAHAEIETEIARRRRKAA
Ga0209109_100511291	3300025160	Soil	MSATLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETEHLTSTKANVRRLRSAHAE
Ga0209521_106101472	3300025164	Soil	MSTNLRVRPTLLRELGKIAAKSDQDVADLAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA
Ga0209343_103263662	3300025311	Groundwater	MLLMNTTLRLRPTLARQLSKIAAESNKDMLALADEALSQFVRSHRETVYVTSTRSNVRRLRAAHAEIEAEIARRKRQAA
Ga0209520_102004221	3300025319	Soil	MSTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETEHLTSTKANVRRLRSAHAEIETEIARRRRKAA
Ga0209641_109895222	3300025322	Soil	TTLRLRPTLARQLSKIAAESNKDMLALADEALSQFVRSHRETAHMTSTRANVRRLRAAHTEIEAEIARRKRQAA
Ga0209640_102153264	3300025324	Soil	MNAPLRVPAALLRELEKAAAESRRDPSKLAADALRQFLRSHRETVHLTRSRANLRRLRGAHAQIEAEIARRKRGAG
Ga0209640_105987441	3300025324	Soil	LRELGKIAAKSDQDVSELVEDTLRKFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA
Ga0209342_113347581	3300025326	Soil	MSATLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA
Ga0209157_12540622	3300026537	Soil	MSTILRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTRANVRRLRSAHAEIETEIAKRRRKAA
Ga0209056_106749102	3300026538	Soil	MSTILRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSTRANVRRLRSA
Ga0209161_102488161	3300026548	Soil	PALARQLSKIAAESNRDVSSLAEDALRQFVNSHRETVRLTRSRANVQRLRAAHAEIEAELARRKRQRLPGTAET
Ga0209726_1001459013	3300027815	Groundwater	MASILRLRPTLLRALGKIAQEADQDVSALAEDALRQFVRSHRETVHLTRSRTNVRRLRPAHAEIEAEIARRKRQAA
Ga0209726_100367102	3300027815	Groundwater	MNTILRLRPALARQLDKIAAESNKDMSSLADDALGQFVRSHRETVYVTSTRANVRRLRAAHVEIEAEIARRRREAA
Ga0209514_101074771	3300027819	Groundwater	RLRPALARQLDRIAAESKKDVSSLADDALSQFVRSHRETVYLTGTRSNVRRLRAAHSEIEAEIARRKRQAA
Ga0209514_101376952	3300027819	Groundwater	MNTILRLRPALARKLGKIAAESNKDMSTLADDALSQFVHSHRETVYVTGTRANVRRLRAAHAEIETEIARRKRQTA
Ga0209283_101759213	3300027875	Vadose Zone Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNVQRLRAAHAEIEAELARRKRQGLPGTAETQP
Ga0209705_103805503	3300027979	Freshwater Sediment	NSFMNAPLHVPPALLKELGKIASESNRAVDDLARDALRQFVRSHQETVRLTRTKANLRRLRAADREIEAELARRRRGAA
Ga0307504_102413601	3300028792	Soil	MNTTVRLRPALARQLGKIAAESNQDVSSLAEDALRQFVNSHRETVRLTRSRTNAQRLRAAHAEIEAEIARRKRQAA
Ga0299906_108259981	3300030606	Soil	MNAPLRVPAALLRELAKAAAESRREPSELAEDALRQYLRSHRETVHLTRSRANVRRLRAAHSEIEAEIGRRRRGAA
Ga0247727_101108374	3300031576	Biofilm	MSTNLRVRPTLLRELGKIAAKSDQGVSELAEDALRQFVRSHRETAHLTSSKANVRRLRAARAEIETEIARRRRKTA
Ga0247727_102250123	3300031576	Biofilm	MSTTLRVRPTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSSKANVRRLRSAHAEIETEIARRRRKAA
Ga0315290_109698491	3300031834	Sediment	MSTTLRVRPTLLRELGKIAAKYDQDVSELAEDALRQFVRSHRETAHLTSSKANVRRLRSAHAEIETEIARRRRKAA
Ga0326597_102848052	3300031965	Soil	MNAPLRVPPALLRELEKIAAESRRDLAELTAEALRQFVRSHRETVHLTRSRANLRRLRAAHTEIEAEIARRRRAAS
Ga0326597_110759442	3300031965	Soil	MNAPLRVPPALLRELEKIAAESRRDLSELTADALRQFVRSHRETVHLTRSRTNVRRLRAAHSEIEAEIARRRRAAS
Ga0315281_1000027819	3300032163	Sediment	MLPMNTTLRLRPTLARQLGKIAAESNKDMLALADEALSQFVRSHRETVYVTSTRSNVRRLRAADAEIEAEIARRKRQAA
Ga0315281_1000082426	3300032163	Sediment	MNTTVRLRPALARQLGKIAAESNQDLSSLAEDALAQFVRSHRETVHLTGSKANVRRLREAHAEIEAEIARRKRRAA
Ga0315281_1001838310	3300032163	Sediment	MSTSLRVRPTLLRELGKIAAKSDQDVSELAENALRQFVRSHRETAHLTSAKANVRRLRSAHAEIETGIARRRRKAA
Ga0315281_1002011213	3300032163	Sediment	MNTNLRVRPTLLRALGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSSKANVRRLRSAHAEIETEIARRRRKTA
Ga0315281_100265321	3300032163	Sediment	MLLMNTTLRLRPTLARQLGKIAAESNKDMLALADEALSQFVRSHRETVYVTSTRSNVRRLRAAHAEIEAEIARRKRQAA
Ga0315281_100406674	3300032163	Sediment	MNTILRLRPTLARQLDKIAAESNKEMSALADDSLSQFVRSHRETAHLTSTRANVRRLRAAHTEIESEIARRKRQAA
Ga0315281_1004324610	3300032163	Sediment	MTTNLRVRSTLLRELGKIAAKSDQDVSELAEDALRQFVRSHRETAHLTSSKANVRRLRSAHVEIETEIARRRRKAA
Ga0214472_104658822	3300033407	Soil	MNAPLRVPPSLLRELGKIAAESKRDISDLAEDALRQFVRSHRETVRLTRSRANVRRLRAAHAEIEAEIARRRRSAS
Ga0326726_105743351	3300033433	Peat Soil	MTAMSTIVRLRPALARQLGKIAAESNQDVTSLAQDALRQFVSSHRETVRLTRSRANVRRLRAAHAEIEAEIARRKRRAA
Ga0364924_151137_106_336	3300033811	Sediment	MNAPLRVPLALLRELGKIAAESRRDISDLAEDALRQFVRSHRETVHLTGSRANLRRLRAAHSEIEAEIARRRRNAA
Ga0364930_0066565_531_761	3300033814	Sediment	MNAPLRVPPPSCANWERSPRNSRRDISDLAEDALRQYVRSQRETVHVTRSRANLRRLRAAHAEIEAEIARRRRNAV