Metagenome Family F081001

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081001
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	49 residues
Representative Sequence	AGRVAYEISSEKVKHRAERRAQNETFAPVPSFLQGHTSINTVSSGFLVA
Number of Associated Samples	78
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	44.34 %
% of genes near scaffold ends (potentially truncated)	63.16 %
% of genes from short scaffolds (< 2000 bps)	81.58 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment (29.825 % of family members)
Environment Ontology (ENVO)	Unclassified (37.719 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (66.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.17% β-sheet: 0.00% Coil/Unstructured: 68.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF09084	NMT1	7.89
PF00005	ABC_tran	4.39
PF02515	CoA_transf_3	3.51
PF14518	Haem_oxygenas_2	2.63
PF03745	DUF309	2.63
PF00483	NTP_transferase	1.75
PF06240	COXG	1.75
PF13343	SBP_bac_6	1.75
PF00296	Bac_luciferase	1.75
PF02784	Orn_Arg_deC_N	1.75
PF00080	Sod_Cu	1.75
PF13720	Acetyltransf_11	1.75
PF00106	adh_short	1.75
PF01632	Ribosomal_L35p	0.88
PF06745	ATPase	0.88
PF02824	TGS	0.88
PF01479	S4	0.88
PF06500	FrsA-like	0.88
PF13414	TPR_11	0.88
PF01408	GFO_IDH_MocA	0.88
PF07332	Phage_holin_3_6	0.88
PF00528	BPD_transp_1	0.88
PF01169	UPF0016	0.88
PF00355	Rieske	0.88
PF13419	HAD_2	0.88
PF01595	CNNM	0.88
PF13751	DDE_Tnp_1_6	0.88
PF12911	OppC_N	0.88
PF08802	Obsolete Pfam Family	0.88
PF07883	Cupin_2	0.88
PF07726	AAA_3	0.88
PF01977	UbiD	0.88
PF01070	FMN_dh	0.88
PF00245	Alk_phosphatase	0.88
PF10431	ClpB_D2-small	0.88
PF13544	Obsolete Pfam Family	0.88
PF05157	T2SSE_N	0.88
PF01047	MarR	0.88
PF03450	CO_deh_flav_C	0.88
PF13472	Lipase_GDSL_2	0.88
PF14520	HHH_5	0.88
PF05402	PqqD	0.88
PF00861	Ribosomal_L18p	0.88
PF00364	Biotin_lipoyl	0.88
PF11146	DUF2905	0.88
PF00472	RF-1	0.88
PF13432	TPR_16	0.88
PF14698	ASL_C2	0.88
PF04767	Pox_F17	0.88
PF05683	Fumerase_C	0.88
PF17167	Glyco_hydro_36	0.88
PF05977	MFS_3	0.88
PF01909	NTP_transf_2	0.88
PF00903	Glyoxalase	0.88
PF01042	Ribonuc_L-PSP	0.88
PF00892	EamA	0.88
PF01636	APH	0.88
PF05258	DciA	0.88
PF02771	Acyl-CoA_dh_N	0.88
PF00255	GSHPx	0.88
PF00596	Aldolase_II	0.88
PF16868	NMT1_3	0.88
PF02397	Bac_transf	0.88
PF00557	Peptidase_M24	0.88
PF02954	HTH_8	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	7.89
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	7.89
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	3.51
COG1547	Predicted metal-dependent hydrolase	Function unknown [S]	2.63
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	1.75
COG3427	Carbon monoxide dehydrogenase subunit CoxG	Energy production and conversion [C]	1.75
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.75
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	1.75
COG2032	Cu/Zn superoxide dismutase	Inorganic ion transport and metabolism [P]	1.75
COG5512	Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives)	General function prediction only [R]	0.88
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.88
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2119	Putative Ca2+/H+ antiporter, TMEM165/GDT1 family	General function prediction only [R]	0.88
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.88
COG1838	Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain	Energy production and conversion [C]	0.88
COG1785	Alkaline phosphatase	Inorganic ion transport and metabolism [P]	0.88
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.88
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	0.88
COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	Defense mechanisms [V]	0.88
COG0291	Ribosomal protein L35	Translation, ribosomal structure and biogenesis [J]	0.88
COG0256	Ribosomal protein L18	Translation, ribosomal structure and biogenesis [J]	0.88
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.88
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	0.88
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.88
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.47 %
Unclassified	root	N/A	16.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.88 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	32.46 %
Unclassified	root	N/A	16.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
Nitrospinae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	32.46 %
Unclassified	root	N/A	16.67 %
unclassified Nitrospinota	no rank	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.88 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	23.68 %
Unclassified	root	N/A	16.67 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.88 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.88 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.88 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	23.68 %
Unclassified	root	N/A	16.67 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.88 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.88 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.88 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	23.68 %
Unclassified	root	N/A	16.67 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.88 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	0.88 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.88 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	23.68 %
Unclassified	root	N/A	16.67 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.88 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	0.88 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.88 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002104\|C687J26621_10152081	Not Available	707	Open in IMG/M
3300004022\|Ga0055432_10188260	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300004062\|Ga0055500_10030588	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300005183\|Ga0068993_10282018	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	596	Open in IMG/M
3300005295\|Ga0065707_10001087	All Organisms → cellular organisms → Bacteria → Proteobacteria	10668	Open in IMG/M
3300005295\|Ga0065707_10146360	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300005345\|Ga0070692_11248519	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300005353\|Ga0070669_100858258	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005438\|Ga0070701_11391313	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	504	Open in IMG/M
3300005444\|Ga0070694_100275038	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300005518\|Ga0070699_101647369	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005543\|Ga0070672_100929224	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	769	Open in IMG/M
3300006847\|Ga0075431_100940402	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300006847\|Ga0075431_101411726	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300006852\|Ga0075433_11785907	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	529	Open in IMG/M
3300006876\|Ga0079217_10013893	All Organisms → cellular organisms → Bacteria	2677	Open in IMG/M
3300007004\|Ga0079218_10179886	All Organisms → cellular organisms → Bacteria	1586	Open in IMG/M
3300009100\|Ga0075418_11437589	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	748	Open in IMG/M
3300009609\|Ga0105347_1176180	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	848	Open in IMG/M
3300010391\|Ga0136847_12758553	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1112	Open in IMG/M
3300010391\|Ga0136847_13420459	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300011410\|Ga0137440_1093574	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300011419\|Ga0137446_1046646	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	960	Open in IMG/M
3300011423\|Ga0137436_1194797	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300011427\|Ga0137448_1002465	Not Available	3236	Open in IMG/M
3300011427\|Ga0137448_1011042	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300011427\|Ga0137448_1020103	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1529	Open in IMG/M
3300011427\|Ga0137448_1091360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	815	Open in IMG/M
3300011427\|Ga0137448_1239448	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	502	Open in IMG/M
3300011436\|Ga0137458_1143608	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300012034\|Ga0137453_1078325	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300012035\|Ga0137445_1123636	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	528	Open in IMG/M
3300012040\|Ga0137461_1000009	All Organisms → cellular organisms → Bacteria	35929	Open in IMG/M
3300012040\|Ga0137461_1000523	All Organisms → cellular organisms → Bacteria → Proteobacteria	8304	Open in IMG/M
3300012040\|Ga0137461_1000889	All Organisms → cellular organisms → Bacteria → Proteobacteria	6185	Open in IMG/M
3300012040\|Ga0137461_1173097	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300012041\|Ga0137430_1129142	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	723	Open in IMG/M
3300012133\|Ga0137329_1044703	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	574	Open in IMG/M
3300012146\|Ga0137322_1027946	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300012172\|Ga0137320_1016833	All Organisms → cellular organisms → Bacteria	1438	Open in IMG/M
3300012179\|Ga0137334_1082909	Not Available	711	Open in IMG/M
3300012226\|Ga0137447_1133673	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012228\|Ga0137459_1104380	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300012232\|Ga0137435_1024226	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1743	Open in IMG/M
3300012350\|Ga0137372_10031455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4859	Open in IMG/M
3300013297\|Ga0157378_11146089	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300014873\|Ga0180066_1055312	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300014878\|Ga0180065_1166657	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	507	Open in IMG/M
3300015251\|Ga0180070_1069007	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300015371\|Ga0132258_12440436	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300018028\|Ga0184608_10532807	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300018031\|Ga0184634_10218912	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300018031\|Ga0184634_10279985	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	765	Open in IMG/M
3300018053\|Ga0184626_10002260	All Organisms → cellular organisms → Bacteria → Proteobacteria	6998	Open in IMG/M
3300018053\|Ga0184626_10013642	All Organisms → cellular organisms → Bacteria	3216	Open in IMG/M
3300018053\|Ga0184626_10021533	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2620	Open in IMG/M
3300018053\|Ga0184626_10126092	Not Available	1088	Open in IMG/M
3300018053\|Ga0184626_10133800	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300018056\|Ga0184623_10085906	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1450	Open in IMG/M
3300018056\|Ga0184623_10142352	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1108	Open in IMG/M
3300018056\|Ga0184623_10161619	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1034	Open in IMG/M
3300018056\|Ga0184623_10184626	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300018056\|Ga0184623_10267202	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300018063\|Ga0184637_10019552	All Organisms → cellular organisms → Bacteria	4077	Open in IMG/M
3300018063\|Ga0184637_10038759	All Organisms → cellular organisms → Bacteria → Proteobacteria	2893	Open in IMG/M
3300018063\|Ga0184637_10300425	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	972	Open in IMG/M
3300018063\|Ga0184637_10582581	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300018063\|Ga0184637_10794444	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	505	Open in IMG/M
3300018071\|Ga0184618_10133887	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1001	Open in IMG/M
3300018074\|Ga0184640_10548212	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	505	Open in IMG/M
3300018076\|Ga0184609_10550460	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300018077\|Ga0184633_10365088	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300018078\|Ga0184612_10193443	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300018078\|Ga0184612_10405495	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	684	Open in IMG/M
3300018078\|Ga0184612_10483045	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300018079\|Ga0184627_10300494	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300018082\|Ga0184639_10068064	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1856	Open in IMG/M
3300018082\|Ga0184639_10134446	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1312	Open in IMG/M
3300018084\|Ga0184629_10113145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1342	Open in IMG/M
3300018084\|Ga0184629_10209083	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300018084\|Ga0184629_10315775	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	822	Open in IMG/M
3300018084\|Ga0184629_10559617	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300020003\|Ga0193739_1150954	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300021051\|Ga0206224_1011191	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	995	Open in IMG/M
3300021051\|Ga0206224_1066051	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300021063\|Ga0206227_1108236	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	552	Open in IMG/M
3300021081\|Ga0210379_10145727	Not Available	1005	Open in IMG/M
3300025160\|Ga0209109_10036487	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2642	Open in IMG/M
3300025289\|Ga0209002_10093254	All Organisms → cellular organisms → Bacteria → Proteobacteria	1994	Open in IMG/M
3300025313\|Ga0209431_10327055	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300025314\|Ga0209323_10481162	Not Available	729	Open in IMG/M
3300025322\|Ga0209641_10127783	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300025322\|Ga0209641_10379270	Not Available	1024	Open in IMG/M
3300025322\|Ga0209641_10392144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1003	Open in IMG/M
3300025535\|Ga0207423_1067131	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	642	Open in IMG/M
3300025580\|Ga0210138_1037354	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1088	Open in IMG/M
3300027815\|Ga0209726_10299606	Not Available	786	Open in IMG/M
3300027909\|Ga0209382_11626446	Not Available	637	Open in IMG/M
3300028803\|Ga0307281_10064040	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300030006\|Ga0299907_10207750	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1615	Open in IMG/M
3300031943\|Ga0310885_10874392	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	514	Open in IMG/M
3300031965\|Ga0326597_10566919	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300032180\|Ga0307471_102497788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	654	Open in IMG/M
3300034165\|Ga0364942_0203887	Not Available	646	Open in IMG/M
3300034178\|Ga0364934_0305064	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300034178\|Ga0364934_0417498	Not Available	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.23%
Host-Associated	Host-Associated	8.77%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	63.16%
Terrestrial	Environmental → Terrestrial	28.07%
Plants	Host-Associated → Plants	8.77%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	54.39%
Soil	Environmental → Terrestrial → Soil	21.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.89%
Freshwater	Environmental → Aquatic → Freshwater	4.39%
Marine	Environmental → Aquatic → Marine	4.39%
Floodplain	Environmental → Terrestrial → Floodplain	3.51%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	54.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.91%
Loam	Environmental → Terrestrial → Soil → Loam	7.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.14%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.39%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.51%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.63%
Lake	Environmental → Aquatic → Freshwater → Lake	1.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	54.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.14%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.51%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	3.51%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.51%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.88%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	29.82%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	24.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.26%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.51%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	3.51%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.63%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.63%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	2.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	1.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.88%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.88%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002104	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011410	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300012034	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2	Environmental	Open in IMG/M
3300012035	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012133	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2	Environmental	Open in IMG/M
3300012134	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT142_2	Environmental	Open in IMG/M
3300012146	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT400_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014878	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D	Environmental	Open in IMG/M
3300015251	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300021063	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos D4	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025314	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1076020892	3300000956	Soil	TLPERRQSSCALKMPAGQVACENSSEKVKHRAEPRAQNETFALVPSLLQGHTAIDRVSSGSVVACYE*
C687J26621_101520811	3300002104	Groundwater	AYEISSEKVKHRAERRAQNETFAPMPSFLQGHTSINKVSSGFLVA*
Ga0055432_101882602	3300004022	Natural And Restored Wetlands	MQAGLIAYEISSEKVKHRAERQAQNETFAPVPSFLQGHTSI
Ga0055500_100305881	3300004062	Natural And Restored Wetlands	AEQVGYAISSEKFEHRAERQAQNEIFASMPSYLQGHTPIDGVSSGFHVT*
Ga0068993_102820182	3300005183	Natural And Restored Wetlands	MQAGLIAYEISSEKVKHRAERQAQNETFAPVPSFLQGHTSIDALS*
Ga0065705_101113132	3300005294	Switchgrass Rhizosphere	MAKQRCVEDASGRVAHEGSSEKVKHRAGRRDPFEIFAPVPSFLQGHDPINRLLSDFLVAVA*
Ga0065707_100010879	3300005295	Switchgrass Rhizosphere	MQAGQSAREVRSEKVRQRAERREQNKTFAPVPSFLQGHTSIDRVPSSFLVA*
Ga0065707_101463602	3300005295	Switchgrass Rhizosphere	MPAGRVAHEISSEKVAHRAERRAQKETFALVPSFLQSYTSMAALK*
Ga0070692_112485192	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	EAASAAAAYESSSGKVKHRAKRRAQNQIFALVPSFLQGHTPID*
Ga0070669_1008582581	3300005353	Switchgrass Rhizosphere	TYNPSGTKGSEMVKHRAECRAQNEKLALVPWFLPDHTSITRVSPDFLVA*
Ga0070701_113913132	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	ELFKVRSEKVKHRVERREQNETFAPVPSFLQGHTSIDTLS*
Ga0070694_1002750381	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LCLEDASGQAAYEISSEKVKHRAKRRAQNKTFALVPLFLQDHTSINRVSSGFL
Ga0070699_1016473692	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	KTPAGQVASEISSAKVKHRAERRAQNETSALVPSSLQGHAAIDALY*
Ga0070672_1009292242	3300005543	Miscanthus Rhizosphere	VDRVAYEGTSEKFQHRAERRIQNETLAPVPSFLQGHTSINAV*
Ga0075431_1009404022	3300006847	Populus Rhizosphere	MPAERVAYEIGSEKVKHRPEHRKQNETFAPVPSFLQSYTSINKVSSGFLLA*
Ga0075431_1014117261	3300006847	Populus Rhizosphere	LKTPAGQVDYEISTEKINHLAERRAQNETFAPVPSFLQGH
Ga0075433_117859072	3300006852	Populus Rhizosphere	LKVHAQNLSTEISSEKVKHRTECSAQNEIFAPVPSFLQGRTSIYKVLSGFLVA*
Ga0079217_100138931	3300006876	Agricultural Soil	MMPGEELLEMSSEKVKHRAEHRAYDETFAPMPSFLQDHTSIDRMLSFFLVA*
Ga0079218_101798862	3300007004	Agricultural Soil	MPARREAYEISSEKIKDGAERRAQNEIFAPLPSFLQGHTSIDTAS*
Ga0075418_114375892	3300009100	Populus Rhizosphere	MPARQIACEIGSEKVKHRAERRAQNETFALVPSFLQGHTAIGALY*
Ga0075423_124854681	3300009162	Populus Rhizosphere	ISFENVKQPTERRAQNEIFAPLPSFLQGHSSVDTELSGFFVA*
Ga0105347_11761802	3300009609	Soil	MYARRVAHEISSAKVKHRAELGAQNETFAPLPSFLQDHTSINTD*
Ga0136847_127585532	3300010391	Freshwater Sediment	ISSEKVKHRAERRAQNETLAPVPSFDVLVLWGHTSINKVSSGFLAP*
Ga0136847_134204592	3300010391	Freshwater Sediment	EISSEKVKHRAQRRTQNKTFALVPSFDVLVLCGRTSIESVSSGFLVA*
Ga0137440_10935741	3300011410	Soil	LPERRQSSCAFKLQARRVAYEISCEKVKHRAERRAQNQTFAPVPSFLQGHTSIWRVYQFSSAHE*
Ga0137446_10466461	3300011419	Soil	RRQSSCALKMQAGRVGYEISGKKVNHRAERRAQTETFAPVPSFLQGHTSIDTVSSGFLVA
Ga0137436_11947971	3300011423	Soil	AAGRVAYATTSEEFKRRAECRAQHETFALVPSFLQGHASIDTLSFVFLVA*
Ga0137448_10024654	3300011427	Soil	MKAGRVGYEISSEKVKHRAECRAQNETFAPVPSFLQGHTSINTVSSGFLVAMNN
Ga0137448_10110423	3300011427	Soil	MHAGRVAYEISSEKVKHRAERRAQNETIAPVPSFLQGHTSINILSSGFLVA*
Ga0137448_10201031	3300011427	Soil	MQAERVGYEISGEKVKHRAERRAQNETFALVPSLLQGHTSIDRVSRVFLEA*
Ga0137448_10913602	3300011427	Soil	YEISSEKVKHRAERRAQNETFAPVPSFLQGHTSINTASSGFS*
Ga0137448_12394481	3300011427	Soil	MQAGRVGYEVSSEKVKHRAEHRAQNQTFALVPSFLRGRASIDSVSSGFL
Ga0137458_11436081	3300011436	Soil	MQAGRVAYEISREKVKHRAERGDQYESLAPVPSFDGLVLLGHTSINRVSSGFL
Ga0137453_10783252	3300012034	Soil	QSSCALKMQAEQVSYEITGETVKHRAERRAQNETFALVPSLLQGHTSINRAW*
Ga0137445_11236362	3300012035	Soil	MHAGRVAYEISSEKVKHRAERRAQNETIAPVPSFLQGHTSINTLSSGF
Ga0137461_100000920	3300012040	Soil	MQSSCALKMQARRVAYEISSEKVKHRAERRAQNETFAPVPSFLQGHTSINTVSSGFLVA*
Ga0137461_10005233	3300012040	Soil	MHAGRVAYEISSEKVKHRAERRAQNETIAPVPSFLQGHTSINTLSSGFLVA*
Ga0137461_10008896	3300012040	Soil	MQAERVGYEISGEKVKHRAERRAQNETFALVPSLLQGHTSINTVSSGFLVAMNNPGQNSIAGRSID*
Ga0137461_11730971	3300012040	Soil	TTCEKIKHRAERRAGNETFALVPSLLQGHTSIDRVSRVFLVA*
Ga0137430_11291422	3300012041	Soil	AGQVAYEISSEKVKRRAECRAQNETFAPVPSFLQGHTSIDRVSSGFLLA*
Ga0137329_10447032	3300012133	Soil	GRVAYEISSEKVKHRAEHRAQNQTFALVPSFLQGHTSIDSASSGFLVA*
Ga0137330_10504202	3300012134	Soil	VAHEISSEKVKHRTDCQAQYETFALVPSFLQGNTPIDTLP*
Ga0137322_10279461	3300012146	Soil	MQAQQVSYEITGETVKHRAERRAQNETFALVPSLLQGHTSINRAW*
Ga0137320_10168331	3300012172	Soil	MQAGQVADEISSEKVKPRAEWRAQNETFEPVPSSLQGHTS
Ga0137334_10829092	3300012179	Soil	PKRRQSRCALKMHAGRIAYEISSEKVKPCTERRAQNETFAPLPSFLQGHTSIDTLSSVLLVA*
Ga0137447_11336731	3300012226	Soil	ISSEKVKHRAERRARNETFVLVPSFLQGHTSINTVSSGFLVA*
Ga0137459_11043802	3300012228	Soil	GQVAYEISSKKVDHRAERRAQNETFALVPSFLQGHTSINRVSSGFLRA*
Ga0137435_10242265	3300012232	Soil	CFEITSEKVKRRAGCQAQNETFAPVPSFDVFVLWGHTSIDRVSSGFLVA*
Ga0137372_100314554	3300012350	Vadose Zone Soil	MPARRVVYEISSEKVKDCAERRTQNETFAPLPSFLQGHTSIDRAS*
Ga0157378_111460892	3300013297	Miscanthus Rhizosphere	RTQSCFALKLQAGQVACEISGEKFKHRAECWTQNETFAPVPSFHQGRTSINTVS*
Ga0180066_10553121	3300014873	Soil	MPAGQVAYEISSEKIKHRGECRAQNEIFAPVPSFLQGHTSIDSVISSPRS
Ga0180065_11666571	3300014878	Soil	MQAGRVAYEISSEKVKHRAERRAQNETFASVPSFFQGHASIKRVSSGILVASIVQAY
Ga0180070_10690072	3300015251	Soil	YEISSEKVKHRAERRAQNEIFAPVPSFLQGRTSINRVSSGFLVA*
Ga0132258_124404361	3300015371	Arabidopsis Rhizosphere	MPAGQVACAISSEKVKHRAERRAQNETFAPVPSFLQGDAAIDRMSSGFVAP*
Ga0184608_102712591	3300018028	Groundwater Sediment	ISCEKVKHRAERPAQNETFAPLPSFLQGHASIDTVLSGFLVA
Ga0184608_105328071	3300018028	Groundwater Sediment	MQARRVADEISSEKVKHRAERRAQNETFAPVPSFLQGYTSINRVSSG
Ga0184634_102189121	3300018031	Groundwater Sediment	SSCALKMPAGQVAYEISSEKVKHRAERRAQNETFAPMPSFLQGHTSIDRASSGFLVA
Ga0184634_102799853	3300018031	Groundwater Sediment	MQARRVAYDNSSEKVKHRAERRAQNETFAPVPSFLQGCTSINRVSPGFLAAMNNPG
Ga0184634_103747882	3300018031	Groundwater Sediment	SEKVKHRAERRAQNETFAPLPSFLQGHTSIDRASSGFFVHE
Ga0184626_100022606	3300018053	Groundwater Sediment	MQAKQVSYEITGEKVKHRAERRAQNETFAPVPSFLQGHTSINTLSSVLLVV
Ga0184626_100136423	3300018053	Groundwater Sediment	MQAGQVSYEITGEKVKHRAEGRAQYETFELVPSLLQGHTSIDRVSRVFLEA
Ga0184626_100215332	3300018053	Groundwater Sediment	MHAGRVANEIGSEKIKHRAERRAQNETFTPVPSFDVLVLWGHTSINRVSSGFLVA
Ga0184626_101260922	3300018053	Groundwater Sediment	ALKMHVGRVAYEISSEKVKHRAERRAPNETFAPVPSFLQGHTSINKVSSGFLVA
Ga0184626_101338001	3300018053	Groundwater Sediment	MHARRVAYEISSEKVKHRAERRAQNETFAPVPSFLQGRTSINSVSSVFLVA
Ga0184623_100859062	3300018056	Groundwater Sediment	MHAGRVANEIGSEKTKHRAERRAQNETFTPVPSFDVLVLWGHTSIN
Ga0184623_101423521	3300018056	Groundwater Sediment	AGRVAYEISSEKVKHRAERRAQNETFAPVPSFLQGHTSINTVSSGFLVA
Ga0184623_101616191	3300018056	Groundwater Sediment	LKVQARRVAYEISSEKVKHRAARRAQNETFAPVPSFGALVLWGRTSINR
Ga0184623_101846262	3300018056	Groundwater Sediment	HAARVANGISSEKVKHRAKRRAQNETVAPVPSFDVLVLWGHTSINSVSSGFLVA
Ga0184623_102672022	3300018056	Groundwater Sediment	MQARRVADEISSEKVKHRAERRAQNETFAPVPSFFQAHTSITKVSSGFLVA
Ga0184637_100195526	3300018063	Groundwater Sediment	MQAGQISYEITGEKVIHRAERRAQNETFALVPSLLQGNTSIDRVS
Ga0184637_100387594	3300018063	Groundwater Sediment	GRVAYEISSEKVKHRAERRAQNETFAPVPSFLQGHTSINRVSSGFLVA
Ga0184637_103004251	3300018063	Groundwater Sediment	MHAARVANGISSEKVKHRAKRRAQNETVAPVPSFDVLVLWGHTSINRVSSGF
Ga0184637_105825811	3300018063	Groundwater Sediment	MHAGRVAYEISSEKVKHRAERRAQNETFAPVPSFLQGHTSINRV
Ga0184637_107944441	3300018063	Groundwater Sediment	VAYEISSEKVKHRAERRAQNETFAPVPSFDVFVLWGRTSINRVSSGFLVA
Ga0184618_101338872	3300018071	Groundwater Sediment	MPAGQVAYEISSEKFKHRAERRAQNEIFAPVPSFLQGYTSIVSVRFPHSMNNPG
Ga0184640_105482121	3300018074	Groundwater Sediment	GQVAYEISSEKVKHRAERRAQNETFAPVPSFLQGHTSIDRVSSSFLVA
Ga0184609_105504602	3300018076	Groundwater Sediment	MRAGQVVYEISSEKVKHRAERRTQNETSPPMPSFLQSHTSIVSVLSG
Ga0184633_103650882	3300018077	Groundwater Sediment	ERRQNSCALKMQAEQVYYEIIGEKVKHRAERRAQNEPFALVPSFLQGHTSINRVSSGFLV
Ga0184612_101934432	3300018078	Groundwater Sediment	MQAKQVSYEITGEKVKHRAERRAQNETFAPVPSFLQGHTSINRAW
Ga0184612_104054952	3300018078	Groundwater Sediment	LKVHVGRVANEISSEKVKHRAERRAQNETFAPVPSFLQGHTSINSVSSGFLVA
Ga0184612_104830452	3300018078	Groundwater Sediment	MQARRVADEISSEKVKHRAERRAQNETFAPVPSFLQGHTSI
Ga0184627_103004941	3300018079	Groundwater Sediment	MRARRVAYEISSEKVKHCAERRAQNETFAPLPSFLQGRTSI
Ga0184639_100680641	3300018082	Groundwater Sediment	SCALKLQAGRVAYEISSEKVKHRTECRAQNETFAPVPSFLQGHTSIDRVP
Ga0184639_101344463	3300018082	Groundwater Sediment	RQSSCALKLPAGRVAYEISSAKVKHRAERQAQNATFALVPSFLQGHTSIDRVSSVSS
Ga0184629_101131451	3300018084	Groundwater Sediment	LKTQPGQFAFEISSEKVKHRAERPAQNETFAPVPSFLQGRTSIDRVRQVF
Ga0184629_102090831	3300018084	Groundwater Sediment	SEKVKHRAERRAQNETFAPVPSFLQGYTSINTVSSGFLVA
Ga0184629_103157752	3300018084	Groundwater Sediment	LKLQAGRVAYEISSEKVKHRAEHRAQNQTFALVPSFLQGHTSIDSASSGFLVA
Ga0184629_105596172	3300018084	Groundwater Sediment	MQAGQVSYEITGEKVKHRAEGRAQYETFELVPSLLQGHTSIDR
Ga0193739_11509541	3300020003	Soil	SGTKAKRCALKMQAGRVGYEISSEKVKHRAERRAQNETFAPMPSFDVLVH
Ga0206224_10111912	3300021051	Deep Subsurface Sediment	QAGRSAYEISSEKVKQRAERRTQNETFALVPSFLQGHTAIDTLSSVLLVV
Ga0206224_10660512	3300021051	Deep Subsurface Sediment	YEISSEKVKHRAERRAQDETFAPVPSFGALVLWGHTSINRVSSGFRVA
Ga0206227_11082362	3300021063	Deep Subsurface Sediment	MQAQQVSYEITGETVKHRAERRAQNETFALVPSFLQAHTSID
Ga0210379_101457271	3300021081	Groundwater Sediment	LKMHARRVAYEISSEKVKHRAERRAQNETFAPMPSYLQGYTSIDKVSSGFLVE
Ga0209109_100364875	3300025160	Soil	MPAGRVAYEISREKVKHRAERRAQNETFALVPSFLQGYASTD
Ga0209002_100932541	3300025289	Soil	SSEKVKHRAERRAQNETFALVPSFLQGYTSIDRVSSGSLVA
Ga0209431_103270554	3300025313	Soil	MPAGRVVYEISSEKVKHRAERRAQNETFAPVPSFLQGHTSIDRVSSGSLV
Ga0209323_104811622	3300025314	Soil	VAYEISSEKVKHRAERRAQNETFAPMPSFLQGHTSIDKVSSGFLVA
Ga0209641_101277831	3300025322	Soil	LCLEDACGRVAYEISSEKVKHRAERRAQNETFAPMPSFLQGHTSINKVSSGFLVA
Ga0209641_103792702	3300025322	Soil	VVYEISSEKVKHRAERRAQNETFAPVPSFLQGHTSIDRVSSGSLVA
Ga0209641_103921442	3300025322	Soil	MPAGRVAYEISSEKVKHRAERRAQNETFAPMPSFLQGHTSINKVS
Ga0207423_10671311	3300025535	Natural And Restored Wetlands	MQAGLIAYEISSEKVKHRAERQAQNETFAPVPSFLQGHTSIDALS
Ga0210138_10373543	3300025580	Natural And Restored Wetlands	MQAGLIAYEISSEKVEHRAERQAQNETFAPVPSFLQGHTPIDTLRCVVPIGKIGRIKL
Ga0209726_102996061	3300027815	Groundwater	LKPQARRVAYAISSEKVKHRAERRAQYETFAPLPSFLQGHTSINTVTSGFLV
Ga0209382_116264462	3300027909	Populus Rhizosphere	RWCLEDAQWRVAFKISSEKVKYQANRWAENETFAPLPSFLPDHTSINRVASGFLEA
Ga0307281_100640401	3300028803	Soil	IPAGRVVNEASSEKVIHCAECHAHNETVAPVPSFLQGHTSIGRVAPGRLVV
Ga0299907_102077502	3300030006	Soil	EIASEKVKQRAELQSETETFALLPSLLQVHTSIYRVSRVFLEA
Ga0310907_105816591	3300031847	Soil	IAMRAALPERRQSCFALKLQAGQVACEISGEKFKHRAECWTQNETFAPVPSFHQGRTSINTVS
Ga0310885_108743922	3300031943	Soil	KDASGGVAYEISSEKVKHRAERRAQNEIFAPVPTFLQGRTSINRVSSAFLVA
Ga0326597_105669193	3300031965	Soil	MPAGQVTYEITSEKVEHRAERRAQDETFALVPSLLPDYTTIDKVS
Ga0307471_1024977881	3300032180	Hardwood Forest Soil	MRAGRVAYEISSEKVNHRAERRAQNEIFAPLPSFLQGHTSINTVSSGFL
Ga0364942_0203887_360_515	3300034165	Sediment	MHAGRVGYEISSEKVKHRAERRDQNETFAPVPSFLQGHTSINGVSSGFLVT
Ga0364934_0106698_755_937	3300034178	Sediment	VAEKGLCPEDVSGRVAYEISSEKFKHRAERRAQNETFAPLPSFLQDYTSIDTLSSVLLVA
Ga0364934_0305064_36_191	3300034178	Sediment	MHAGRVAYEISSEKVKHRAERRDQNETFAPVPSFLQGHTSINGVSSGFLVT
Ga0364934_0417498_3_155	3300034178	Sediment	FCALKVQARRVAYEISSEKVKHRAERRAQNETFAPVPSFLQGFTSIDVVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081001

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences