3300001461: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3

Overview

Basic Information

• IMG/M Taxon OID: 3300001461
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054854 | Ga0002915
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53549027
• Sequencing Scaffolds: 28
• Novel Protein Genes: 29
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia nova → Nocardia nova SH22a	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Hypocreaceae → Trichoderma → Trichoderma gamsii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000364	Metagenome / Metatranscriptome	1229	Y
F001457	Metagenome / Metatranscriptome	691	Y
F002654	Metagenome / Metatranscriptome	539	Y
F003567	Metagenome / Metatranscriptome	479	Y
F003812	Metagenome / Metatranscriptome	467	Y
F005358	Metagenome / Metatranscriptome	403	Y
F006875	Metagenome / Metatranscriptome	363	Y
F015682	Metagenome / Metatranscriptome	253	Y
F016792	Metagenome / Metatranscriptome	244	Y
F017680	Metagenome / Metatranscriptome	239	Y
F019857	Metagenome / Metatranscriptome	227	Y
F021561	Metagenome / Metatranscriptome	218	Y
F024195	Metagenome / Metatranscriptome	207	Y
F025875	Metagenome / Metatranscriptome	200	Y
F026959	Metagenome / Metatranscriptome	196	Y
F027667	Metagenome / Metatranscriptome	194	Y
F035113	Metagenome / Metatranscriptome	173	Y
F037918	Metagenome / Metatranscriptome	167	Y
F049957	Metagenome / Metatranscriptome	146	Y
F052050	Metagenome / Metatranscriptome	143	Y
F064674	Metagenome / Metatranscriptome	128	Y
F066934	Metagenome / Metatranscriptome	126	Y
F071788	Metagenome / Metatranscriptome	122	Y
F084831	Metagenome / Metatranscriptome	112	N
F085916	Metagenome / Metatranscriptome	111	Y
F102043	Metagenome / Metatranscriptome	102	Y
F105988	Metagenome / Metatranscriptome	100	Y
F106076	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12698J15209_1000451	All Organisms → cellular organisms → Bacteria	2089
JGI12698J15209_1000607	Not Available	1877
JGI12698J15209_1001104	Not Available	1433
JGI12698J15209_1001650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1205
JGI12698J15209_1001689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1190
JGI12698J15209_1001831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1151
JGI12698J15209_1002132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1083
JGI12698J15209_1002279	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1052
JGI12698J15209_1003209	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	901
JGI12698J15209_1003339	Not Available	886
JGI12698J15209_1003771	Not Available	841
JGI12698J15209_1004354	Not Available	788
JGI12698J15209_1004480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	779
JGI12698J15209_1004946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	748
JGI12698J15209_1006286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	678
JGI12698J15209_1006392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	673
JGI12698J15209_1006710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia nova → Nocardia nova SH22a	662
JGI12698J15209_1006786	Not Available	659
JGI12698J15209_1006815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	658
JGI12698J15209_1007222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	643
JGI12698J15209_1008083	Not Available	616
JGI12698J15209_1009254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587
JGI12698J15209_1011401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543
JGI12698J15209_1011571	Not Available	540
JGI12698J15209_1012316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528
JGI12698J15209_1012528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525
JGI12698J15209_1012617	Not Available	523
JGI12698J15209_1013640	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Hypocreaceae → Trichoderma → Trichoderma gamsii	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12698J15209_1000451	JGI12698J15209_10004513	F006875	MVDLLRPVIGKPGQVRLVVRGLNGRWTLNDDKHPLLSMDLRDDGLIEFTRDDGWSVLDPADVLAVEWVSRDTEGQGQYL*
JGI12698J15209_1000607	JGI12698J15209_10006073	F024195	VQTNTIINVLGAIVTVALVTTVVANANSANVINSLGNAFSGSIRASMGH*
JGI12698J15209_1001104	JGI12698J15209_10011042	F084831	MFKYKDVVFSVRSTLISSLKKIEGMGMSRASFLLDSLGFSRYFKTIYMNYYQHGNIVVLLKSRYILDSRLKELRLQRLEFFFARTFVKGKRLFDGLPLGGRSHSNGATSLRLKPYSEKYNEEILSRQRRIANYAKTRIKKKRK*
JGI12698J15209_1001650	JGI12698J15209_10016501	F000364	AADEELDLEPINYLVAEQERGPCEAVVLSLTDTSESKMPASEMLLGAQMGQFPRAPKPKHNVGREAEHRMHLTVQHLTAIGCEASGFISDEDDLIKTVMSEVRHRDYDAVLLVSTRQRGSPTARLLHLDPKSRLRRRLGRRLVVFPLGDGAPHPVLPS*
JGI12698J15209_1001689	JGI12698J15209_10016891	F105988	MPRQHQAGQPEDGAPGPERPSWLSLVTSGLVYAGVLLGMWIVLAGQPDAQDLVAGSAAAVVAVGAGYFISQRGRMVPSVRAADLRTLAAVPWR
JGI12698J15209_1001831	JGI12698J15209_10018313	F071788	VDWKRVQGGALSLKQIIGYAIVALLLFFVIKDPTGAAHSVNDIGNFLSAVARGFTSFIGSL*
JGI12698J15209_1002132	JGI12698J15209_10021322	F016792	PTVVLVSGTFSPPPALPHCRSSTGFVRPEGC*GSHRPTNPQGSMREYPVREPCPPKCCYPDRRRSDPTFEASGTTATIREHQPRGGPAEDGRLNESERPWSRSVIENRPKVLAGRSQNGTRVGSSSGTLDDGGNVTRRTIGRSRPTRLSTLDNRVSPIRPVAARRRYPSRKDGDGGGGRGTAE*
JGI12698J15209_1002279	JGI12698J15209_10022792	F002654	MSKGKRPKQVFKVPKLLLSEKKDVLYINYQEIGLEAAIF*
JGI12698J15209_1003209	JGI12698J15209_10032091	F064674	SPPAPSAAESRIAELERLLGRKQLEVDFLKRAFEQVRGAASSRTSDGGKESIARSKSRSRSKE*
JGI12698J15209_1003339	JGI12698J15209_10033391	F017680	MNNQDAMFYSLQLRLVDGHPGNPGSHKVELIALPEGPGEPRRAHFDHWEGLAHRLSAVTSSTPFHLKATYRTMVAGLTASMIDRATGARQIFSLHQLKDLGLAS*
JGI12698J15209_1003771	JGI12698J15209_10037711	F001457	GDDPRAGSWALVDQGTGGVLDVVPPGEFSRRFHPVDVFADVPSLPNYLGTVTAADGTALVDLVLDRNPFMLDNGPRRVARPHALMVPRAHRDGWSSASAQELTAGHTAMTLIADWYRSLDGGHVVFGANDSAANAAYRYDVEVAGGAIAAGGADAVIIKNPRQEAQHAHLHAFYLEDAPTENHESSAVQGSPVMAEGYRVFSPELGSDATRVDPAGPAFAASVRAAAQPWGGSYCSYQLGVGGPFWVMPDLGPSQDDFNRRLARADGLKAAPDPNLGGA
JGI12698J15209_1004354	JGI12698J15209_10043543	F019857	EPTITERATASLDEFIATVLRHVRTGQSDPLEEPGLQKAAEELQNRRPDVPGAGKEPEPA
JGI12698J15209_1004480	JGI12698J15209_10044801	F102043	VGCVQDQQPALGVFVGRTAELGRAGEVIDLVAAGQPWLVSIE
JGI12698J15209_1004946	JGI12698J15209_10049463	F003812	VKLRTVITYAAIAFVVWWVIQQPTNAAHLVHNIGTLLSSAA
JGI12698J15209_1006286	JGI12698J15209_10062861	F021561	MDSAGSSERMADYLRDHHDKVVGRWSELVIAGLRGRTSLEEVRRE
JGI12698J15209_1006392	JGI12698J15209_10063921	F071788	LKLKTIIGYAVVAFLLFFVIKDPTGAAHIVQDIGNFLSSVARGFSNFLDSL*
JGI12698J15209_1006710	JGI12698J15209_10067101	F005358	HLRGSGLIRIAGGSFLALAGVLLLSYQAYGWAALFLVLAVLNLAGGYWYMTMARSVPPR*
JGI12698J15209_1006786	JGI12698J15209_10067861	F049957	PDGSMPEEASFIVESALIGMGLGAKTRKRLLAEPRPASVTDLGACPLSEPLLSAVAVIAFTAMSEAPGPEDAVRRMPALLRRMGLARPAAETKAAEILDEYTSTYLVLSDLSAQLRTEAPERPFRVRLPAATMIAVSEGINARNTNELSRQVTRQAVATILRRGIRATVSAGIPLHPAASTVIRVAGQLLGEDVPELPARAQPAEVPGEQHARADRETT
JGI12698J15209_1006815	JGI12698J15209_10068152	F027667	FNRRLAGADGLKAGPDPNLGGAVNLVRPTLADPDRLHAAQQADAQHRASFETFVTSRGLNLRSLPVD*
JGI12698J15209_1007222	JGI12698J15209_10072221	F052050	MTNLDPQTTGDFWDAYLRAAGAGTKLAQVSRTVPDDPQKRRSPVSGPVSYVPRIARAPITFAWDLVVLRRP
JGI12698J15209_1008083	JGI12698J15209_10080831	F085916	MRDQAFLEGQKNGRIDRFRGTKNEYSWIVLLTDGYSRSYSLGYRQGWTRPHEGAL*
JGI12698J15209_1009254	JGI12698J15209_10092542	F025875	VIRFSASLVVVGVGLLIAGGVTSKLLLIYIAIGVSA
JGI12698J15209_1011401	JGI12698J15209_10114012	F066934	MGEGIMTTAVLTRLREIREERARRRTLWRELSAYTTAEDLDDIEAAVARSDGAQTDPETQEIRRFLAARRAMSQRA*
JGI12698J15209_1011571	JGI12698J15209_10115712	F035113	MDDFSEDFTRLDDSALLSMRAQMRAKLERLPPTSPGHAALMALYDKTTEEVDDRARRAWTGAS*
JGI12698J15209_1012316	JGI12698J15209_10123161	F037918	MPDWAEQVTAIATAVNAIGLLSAIALVVFAAQQAREARVGRQAEMAIEFFRRWSEGPMVEARRLVAEFETPEELRDALTVFVAENSAEAYILFRELDYFEQLGALERHGGFDFELIRSLLGRRLIDRWEMWQPAIEAIGGPAAYPMFGRLASKMRAADL*
JGI12698J15209_1012367	JGI12698J15209_10123672	F015682	VLRGPRGVALLTLALINVFTLVAGVTLVRMLPARLAMLK
JGI12698J15209_1012528	JGI12698J15209_10125281	F003567	VTTSQLFVRAAGRGDWTRCPPDEITWLDRGLLSNNEDLTLHRAPRCAGLRYVHHR
JGI12698J15209_1012617	JGI12698J15209_10126171	F026959	MQENMGMGDERLRSEIREEQERIISAVRSAGDHWEMAKAEDAFADLLERMADELEMGSAHDRGRFLAAAQALRRSAAVNEHRYVSGLGAEDA*
JGI12698J15209_1013640	JGI12698J15209_10136401	F106076	RVNIIAKITVATNPYKAPLLLPCITEW*AYVTVTPDDNNITVLSKGSSKGLIASIPIGGH*APNSTAGDNAL*KNAQNIAKKNNASDTINKATPIFKPLCTAKVWFPKYVPSLITSRHQNVIEEISEIKAKIKKLPEILKLCIVNTPVVVNVNKEREVYKGQGDGDTKWK