Metagenome / Metatranscriptome Family F085916

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085916
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	56 residues
Representative Sequence	MNDQAWLDGQKNGRTDRFRGTKNEHAWIVLLNEGYSRSYSLGYRHGWTRPNEGAL
Number of Associated Samples	79
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.98 %
% of genes near scaffold ends (potentially truncated)	27.03 %
% of genes from short scaffolds (< 2000 bps)	76.58 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.856 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (29.730 % of family members)
Environment Ontology (ENVO)	Unclassified (28.829 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.658 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.12% β-sheet: 10.84% Coil/Unstructured: 59.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02211	NHase_beta	5.41
PF12704	MacB_PCD	3.60
PF10136	SpecificRecomb	3.60
PF07883	Cupin_2	1.80
PF13649	Methyltransf_25	1.80
PF07676	PD40	1.80
PF00058	Ldl_recept_b	1.80
PF13493	DUF4118	1.80
PF16472	DUF5050	1.80
PF08811	DUF1800	1.80
PF13231	PMT_2	0.90
PF12697	Abhydrolase_6	0.90
PF02687	FtsX	0.90
PF00069	Pkinase	0.90
PF02518	HATPase_c	0.90
PF01872	RibD_C	0.90
PF13751	DDE_Tnp_1_6	0.90
PF07969	Amidohydro_3	0.90
PF02979	NHase_alpha	0.90
PF07992	Pyr_redox_2	0.90
PF04542	Sigma70_r2	0.90
PF00440	TetR_N	0.90
PF13489	Methyltransf_23	0.90
PF00583	Acetyltransf_1	0.90
PF16757	Fucosidase_C	0.90
PF01979	Amidohydro_1	0.90
PF00072	Response_reg	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.60
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	1.80
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.90
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.90
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.90
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.90
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.90
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.86 %
Unclassified	root	N/A	44.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.86 %
Unclassified	root	N/A	44.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.86 %
Unclassified	root	N/A	44.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.14 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	21.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.80 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.90 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.14 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	21.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.14 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	21.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.90 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.90 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.14 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	2.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	0.90 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.90 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.90 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.14 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	1.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
unclassified Edaphobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → unclassified Edaphobacter	0.90 %
Acidicapsa dinghuensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis	0.90 %
Acidobacterium capsulatum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	0.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.90 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.14 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	1.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Edaphobacter sp. 12200R-103	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → unclassified Edaphobacter → Edaphobacter sp. 12200R-103	0.90 %
Acidicapsa dinghuensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis	0.90 %
Acidobacterium capsulatum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	0.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Planctomycetes bacterium Pan216	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	0.90 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02JXICY	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	540	Open in IMG/M
3300001461\|JGI12698J15209_1008083	Not Available	616	Open in IMG/M
3300001593\|JGI12635J15846_10075302	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2484	Open in IMG/M
3300001593\|JGI12635J15846_10112851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1931	Open in IMG/M
3300001593\|JGI12635J15846_10573005	Not Available	659	Open in IMG/M
3300002245\|JGIcombinedJ26739_100349027	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	1361	Open in IMG/M
3300002245\|JGIcombinedJ26739_100445876	Not Available	1172	Open in IMG/M
3300004080\|Ga0062385_10010476	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3143	Open in IMG/M
3300004082\|Ga0062384_100317583	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	974	Open in IMG/M
3300004091\|Ga0062387_101472630	Not Available	545	Open in IMG/M
3300004092\|Ga0062389_100652575	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300004092\|Ga0062389_103618637	Not Available	580	Open in IMG/M
3300004092\|Ga0062389_104529455	Not Available	523	Open in IMG/M
3300004092\|Ga0062389_104570284	Not Available	521	Open in IMG/M
3300005537\|Ga0070730_10007550	All Organisms → cellular organisms → Bacteria	9189	Open in IMG/M
3300005591\|Ga0070761_10212080	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1150	Open in IMG/M
3300005591\|Ga0070761_10245347	Not Available	1069	Open in IMG/M
3300005602\|Ga0070762_11184087	Not Available	528	Open in IMG/M
3300005712\|Ga0070764_10729330	Not Available	612	Open in IMG/M
3300005921\|Ga0070766_11205705	Not Available	524	Open in IMG/M
3300005994\|Ga0066789_10022372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2801	Open in IMG/M
3300006176\|Ga0070765_101985856	Not Available	544	Open in IMG/M
3300009624\|Ga0116105_1235592	Not Available	516	Open in IMG/M
3300009633\|Ga0116129_1064504	Not Available	1103	Open in IMG/M
3300009665\|Ga0116135_1004874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5345	Open in IMG/M
3300009665\|Ga0116135_1326621	Not Available	610	Open in IMG/M
3300009665\|Ga0116135_1483062	Not Available	512	Open in IMG/M
3300009759\|Ga0116101_1104521	Not Available	661	Open in IMG/M
3300011270\|Ga0137391_10072282	All Organisms → cellular organisms → Bacteria	2966	Open in IMG/M
3300012363\|Ga0137390_11651803	Not Available	577	Open in IMG/M
3300012683\|Ga0137398_10160374	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300012924\|Ga0137413_10175002	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300014489\|Ga0182018_10019786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4470	Open in IMG/M
3300014495\|Ga0182015_10019832	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5537	Open in IMG/M
3300014495\|Ga0182015_10051689	All Organisms → cellular organisms → Bacteria	3000	Open in IMG/M
3300014495\|Ga0182015_10074716	All Organisms → cellular organisms → Bacteria	2395	Open in IMG/M
3300014501\|Ga0182024_10626534	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300014501\|Ga0182024_11098585	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300015245\|Ga0137409_10165795	All Organisms → cellular organisms → Bacteria → Acidobacteria	2013	Open in IMG/M
3300015264\|Ga0137403_10238905	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300018034\|Ga0187863_10123832	Not Available	1445	Open in IMG/M
3300018034\|Ga0187863_10468047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300018037\|Ga0187883_10389183	Not Available	714	Open in IMG/M
3300020583\|Ga0210401_10049334	All Organisms → cellular organisms → Bacteria → Acidobacteria	3978	Open in IMG/M
3300021401\|Ga0210393_11579807	Not Available	521	Open in IMG/M
3300021402\|Ga0210385_10214061	Not Available	1405	Open in IMG/M
3300021404\|Ga0210389_10039345	All Organisms → cellular organisms → Bacteria	3629	Open in IMG/M
3300021405\|Ga0210387_10725825	Not Available	880	Open in IMG/M
3300021406\|Ga0210386_10762134	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300021406\|Ga0210386_11453349	Not Available	573	Open in IMG/M
3300021420\|Ga0210394_10465209	Not Available	1113	Open in IMG/M
3300021420\|Ga0210394_10816369	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300021477\|Ga0210398_10772562	Not Available	775	Open in IMG/M
3300022512\|Ga0242676_1037089	Not Available	571	Open in IMG/M
3300025463\|Ga0208193_1043171	Not Available	1027	Open in IMG/M
3300025494\|Ga0207928_1079810	Not Available	608	Open in IMG/M
3300027002\|Ga0209110_1029097	Not Available	661	Open in IMG/M
3300027545\|Ga0209008_1038070	All Organisms → cellular organisms → Bacteria → Proteobacteria	1108	Open in IMG/M
3300027545\|Ga0209008_1082187	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300027567\|Ga0209115_1032059	Not Available	1189	Open in IMG/M
3300027857\|Ga0209166_10007216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7434	Open in IMG/M
3300027879\|Ga0209169_10624577	Not Available	562	Open in IMG/M
3300027895\|Ga0209624_10282157	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300027908\|Ga0209006_10004995	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12047	Open in IMG/M
3300027908\|Ga0209006_10772734	Not Available	781	Open in IMG/M
3300028536\|Ga0137415_10162387	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
3300028746\|Ga0302233_10320814	Not Available	586	Open in IMG/M
3300028746\|Ga0302233_10417890	Not Available	508	Open in IMG/M
3300028747\|Ga0302219_10096002	Not Available	1118	Open in IMG/M
3300028747\|Ga0302219_10310445	Not Available	614	Open in IMG/M
3300028776\|Ga0302303_10036952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1974	Open in IMG/M
3300028795\|Ga0302227_10028762	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis	2816	Open in IMG/M
3300029910\|Ga0311369_10376530	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1240	Open in IMG/M
3300029910\|Ga0311369_10733439	Not Available	807	Open in IMG/M
3300029943\|Ga0311340_10172008	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2229	Open in IMG/M
3300029943\|Ga0311340_10173159	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2218	Open in IMG/M
3300029943\|Ga0311340_10256378	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1703	Open in IMG/M
3300029944\|Ga0311352_10428044	All Organisms → cellular organisms → Bacteria → Acidobacteria	1080	Open in IMG/M
3300029951\|Ga0311371_10186410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3105	Open in IMG/M
3300029999\|Ga0311339_10503656	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300029999\|Ga0311339_11403489	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → unclassified Edaphobacter → Edaphobacter sp. 12200R-103	627	Open in IMG/M
3300030007\|Ga0311338_10141131	All Organisms → cellular organisms → Bacteria → Acidobacteria	2889	Open in IMG/M
3300030007\|Ga0311338_11106149	Not Available	760	Open in IMG/M
3300030043\|Ga0302306_10333102	Not Available	581	Open in IMG/M
3300030053\|Ga0302177_10371851	Not Available	752	Open in IMG/M
3300030053\|Ga0302177_10468973	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300030058\|Ga0302179_10350992	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300030399\|Ga0311353_11253672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300030503\|Ga0311370_10177974	All Organisms → cellular organisms → Bacteria	2893	Open in IMG/M
3300030503\|Ga0311370_10386510	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300030503\|Ga0311370_10862682	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1032	Open in IMG/M
3300030520\|Ga0311372_11226143	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300030524\|Ga0311357_11612254	Not Available	545	Open in IMG/M
3300030618\|Ga0311354_10645478	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1021	Open in IMG/M
3300030646\|Ga0302316_10446011	Not Available	518	Open in IMG/M
3300031057\|Ga0170834_102809978	Not Available	781	Open in IMG/M
3300031090\|Ga0265760_10250698	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300031090\|Ga0265760_10367324	Not Available	516	Open in IMG/M
3300031236\|Ga0302324_100118052	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	4437	Open in IMG/M
3300031474\|Ga0170818_107284918	Not Available	1111	Open in IMG/M
3300031524\|Ga0302320_10594897	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300031525\|Ga0302326_11373090	Not Available	957	Open in IMG/M
3300031525\|Ga0302326_11512386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	898	Open in IMG/M
3300031525\|Ga0302326_12861585	Not Available	594	Open in IMG/M
3300031708\|Ga0310686_109261810	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300031708\|Ga0310686_119785363	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	2992	Open in IMG/M
3300031823\|Ga0307478_10230296	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	1500	Open in IMG/M
3300032515\|Ga0348332_10443719	Not Available	502	Open in IMG/M
3300034124\|Ga0370483_0299023	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300034163\|Ga0370515_0015927	All Organisms → cellular organisms → Bacteria	3499	Open in IMG/M
3300034163\|Ga0370515_0020053	All Organisms → cellular organisms → Bacteria	3083	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.68%
Aquatic	Environmental → Aquatic	15.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.15%
Peat	Environmental → Terrestrial → Peat	30.63%
Freshwater	Environmental → Aquatic → Freshwater	15.32%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	30.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.13%
Loam	Environmental → Terrestrial → Soil → Loam	18.02%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.01%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	30.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.01%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	29.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.91%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.31%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.31%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.60%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	3.60%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.70%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.80%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.90%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300001461	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300027002	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_09429690	2170459010	Grass Soil	MNNQAWLDGQKSGRSDRFRGTKNEQAWIVLLNEGYSRSYSLGYRQGWTRPNEGXL
JGI12698J15209_10080831	3300001461	Forest Soil	MRDQAFLEGQKNGRIDRFRGTKNEYSWIVLLTDGYSRSYSLGYRQGWTRPHEGAL*
JGI12635J15846_100753021	3300001593	Forest Soil	MNDQAWLEGQKNGRIDRLRGTKNEYAWVVLLNEGYSRSYSLGYRHGWTRPDEGPL*
JGI12635J15846_101128513	3300001593	Forest Soil	MKDQAWLEGQKNGRIDRFRGTKNEYVWVVLLIEGYSRNYSLGYRHGWTRPHEGAL*
JGI12635J15846_105730051	3300001593	Forest Soil	MNDQAWLEGQKNGRIDRFRGTKNETVWIVLLTDGYSRSYSLGYRHGWTRPNEGPL*
JGIcombinedJ26739_1003490273	3300002245	Forest Soil	MKDQAFLEGQKNGRIDRFRGTKNEYSWIVLLTEGYSRNYSLGYRQGWTRPHEGAL*
JGIcombinedJ26739_1004458762	3300002245	Forest Soil	MNNQAWLEGQKNGRIDRFRGTKNETVWIILLTEGYSRSYSLGYRHGWTRPNEGPL*
Ga0062385_100104762	3300004080	Bog Forest Soil	MNDQAWLEGRKNGRIDRLRGTKNEYAWVVLLNEGYSRSYSLGYRHGWTRPDEGPL*
Ga0062384_1003175832	3300004082	Bog Forest Soil	MNDQAFLDGQKNGRIDRFRGAKNEYAWVVLLNEGYSRSYSLGYRHGWTRPNEGAL*
Ga0062387_1014726301	3300004091	Bog Forest Soil	MVMKDQAFLDGQKNGRIDRFRGTRNEYAWVVLLNEGYSRSYSLGYRHGWTRPHEGAL*
Ga0062389_1006525751	3300004092	Bog Forest Soil	MKDQGWLDGLKNGRTDRFRGAKNEYAWVVLLTEGYSRNYSLGYRYGWTRPNEGPL*
Ga0062389_1036186371	3300004092	Bog Forest Soil	MKDQAWLDGQKNGRIDRFRGTRNEHAWIILLNEGYSRSYSLGYRQGWTRPNEGPL*
Ga0062389_1045294551	3300004092	Bog Forest Soil	VSDQAWLDGQKNGRGDRLRGTKNEQTWIVLLNEGYSRSYSLGYRQGWTRPNEGPL*
Ga0062389_1045702841	3300004092	Bog Forest Soil	MNGKAQRGGFAMKDQAWLDGQKNGRIDRFRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPHEGAL*
Ga0070730_100075502	3300005537	Surface Soil	MNDQAWLDGQKNGRSDRFRGTRNDQAWIVLLNEGYSRSYSLGYRHGWTRPNEGAL*
Ga0070761_102120802	3300005591	Soil	MKDQAWLDGQKNGRIDRFRGTRNEHAWIVLLNEGYSRNYSLGYRHGWTRPNEGPL*
Ga0070761_102453472	3300005591	Soil	MQDQAWLDGQKNGRIDRLRGTKNEQAWLVLLNEGYSRNYSLGYRHGWTRPNEGAL*
Ga0070762_111840871	3300005602	Soil	MKDQAFLDGQKNGRIDRFRGTRNEYAWVVLLNEGYSRSYSLGYRQGW
Ga0070764_107293301	3300005712	Soil	VLNGEGATMNNQAWLDGQRNGRMDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWSRPNEGAL*
Ga0070766_112057051	3300005921	Soil	MNDQAWLDGQKNGRSDRFRGNKNEHAWIVVLNEGYSRSYSLGYRHGWTRPNEGAL*
Ga0066789_100223723	3300005994	Soil	MNDQAWLDGRKNGRVDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWTRPNEGPL*
Ga0070765_1019858561	3300006176	Soil	MNNQAWLEGQKNGRIDRFRGTKNETVWIILLTEGYSRSYSLGYRHGWTRP
Ga0116105_12355921	3300009624	Peatland	MNDQAWLDGQKEGRIDRFKGAKNQYAWVVLLNDGYSRSYSLGYRHGWTRPNEGAL*
Ga0116129_10645042	3300009633	Peatland	MNDQAWLEGQKNGRIDRFRGTKNETAWIVLLNEGYSRSYSLGYRHGWTRPNEGPL*
Ga0116135_10048745	3300009665	Peatland	MNDQAWLDGQKNGRIDRLRGAKNEHAWIVLLNEGYSRSYSLGYRHGWTRPNEGAL*
Ga0116135_13266211	3300009665	Peatland	MNDQAWLDGQKDGRIDRLMGAKNQYAWVALLNEGYSRSYSLGYRHGWTRPNEGAL*
Ga0116135_14830621	3300009665	Peatland	MNNQAWLDGQKSGRIDRFRGTKNEQAWIVLLNDGYSRNYSLGYRHGWTRPN
Ga0116101_11045211	3300009759	Peatland	AWLDGQKEGRIDRFKGAKNQYAWVVLLNDGYSRSYSLGYRHGWTRPNEGAL*
Ga0137391_100722823	3300011270	Vadose Zone Soil	MNDQAWLDGQKSGRSDRFRGTKNEHAWIVLLNEGYYRSYSLGYRHGWTRPNEGAL*
Ga0137390_116518031	3300012363	Vadose Zone Soil	RTMNDQAWLDGQKNGRTDRFRGTKNEHAWIVLLNEGYSRSYSLGYRHGWTRPNEGAL*
Ga0137398_101603742	3300012683	Vadose Zone Soil	MNDQAWLDGQKSGRTDRFRGTKNEHAWIVLLNEGYSRSYSLGYRHGWTRPNEGAL*
Ga0137413_101750023	3300012924	Vadose Zone Soil	MNDQAWLDGQKNGRTDRFRGTKNEHAWIVLLNEGYSRSYSLGYRHGWTRPNEGAL*
Ga0182018_100197865	3300014489	Palsa	MNDHAWLEGQKNGRIDRLRGAKNEHAWIVLLNEGYSRSYSLGYRHGWTRPNEGPL*
Ga0182015_100198322	3300014495	Palsa	MVMKDQAWLEGQKNGRIDRFRGTKNEYAWVVLLIEGYSRSYSLGYRQGWTRPHEGAL*
Ga0182015_100516893	3300014495	Palsa	MSDQAWLDGRKNGRVDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWTRPNEGPL*
Ga0182015_100747161	3300014495	Palsa	MNGMGPGEDTAMKDQAWLDGQKHGRIDRLRRTKNEYAWIVLLNEGYSRSYSLGYRHGWTRPDEGAL*
Ga0182024_106265341	3300014501	Permafrost	MSSMGPGEGAAMKDQAWLDGQKDGRIDRLRRTKNEYAWIVLLNEGYSRSYSLGYRHGWTRPDEGAL*
Ga0182024_110985852	3300014501	Permafrost	MNDQAWLEGQKNGRIDRYRGTKNETAWIVLLNEGYSRSYSLGYRHGWTRPNEGPL*
Ga0137409_101657953	3300015245	Vadose Zone Soil	MNDQAWLDGQKNGRTDRFRGTKNEHAWIVLLNEVYSRSYSLGYRHGWTRPNEGAL*
Ga0137403_102389053	3300015264	Vadose Zone Soil	MNDQAWLDGQKNGRTDRFRGTKNEHAWIVLLNEGYYRSYSLGYRHGWTRPNEGAL*
Ga0187863_101238322	3300018034	Peatland	MNDQAWLDGQKEGRIDRFKGAKNQYAWVVLLNDGYSRSYSLGYRHGWTRPNEGAL
Ga0187863_104680472	3300018034	Peatland	GKAQRGGLAMQDKAWLDGQKNGRIDRLRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0187883_103891831	3300018037	Peatland	MNDQAFLDGQKNGRIDRFRGAKNEYAWVVLLNEGYSRSYSLGYRHG
Ga0210401_100493342	3300020583	Soil	MNDQAWLDGQKNGRSDRFRGNKNEHAWIVVLNEGYSRSYSLGYRHGWTRPNEGAL
Ga0210393_115798071	3300021401	Soil	MKDQAFLEGQKNGRIDRFRGTKNEYSWIVLLTEGYSRNYSLGYRQGWTRPHEGAL
Ga0210385_102140612	3300021402	Soil	MKDQAFLDGQKNGRIDRFRGTRNEYAWIVLLNEGYSRSYSLGYRHGWTRPHEGAL
Ga0210389_100393453	3300021404	Soil	MICERPTCGAATMKDQAWLEGLKNGRTDRFRGAKNEYAWVVMLAEGYSRSYSLGYRHGWTRPNDGPL
Ga0210387_107258251	3300021405	Soil	MNDQAWLEGQKNGRIDRFRGTKNETAWIVLLTEGYSRSYSLGYRHGWTRPNEGPL
Ga0210386_107621342	3300021406	Soil	MNNQAWLEGQKNGRIDRFRGTKNETVWIILLTEGYSRSYSLGYRHGWTRPNEGPL
Ga0210386_114533492	3300021406	Soil	MNDQAFLDGQKNGRIDRFRGAKNEYAWVVLLNEGYSRSYSLGYRHGWTRPNEGAL
Ga0210394_104652091	3300021420	Soil	MKDQAFLDGQKNGRIDRFRGTRNEYAWVVLLNEGYSRSYSLGYRHGWTRPHEGAL
Ga0210394_108163692	3300021420	Soil	MNDQAWLEGRKNGRIDRLRGTKNEYAWVVLLNEGYSRSYSLGYRHGWTRPDEGPL
Ga0210398_107725621	3300021477	Soil	MNSMGPGEGAAMKDQAWLDGQKAGRIDRLRRTKNEYAWIVLLNEGYSRSFSLGYRHGWTRPDEGAL
Ga0242676_10370891	3300022512	Soil	EHEREAVNGKGATMNNQAWLDGQKNGRMDRLRGDRNEHVWIVLLNEGYSRSYSLGYRQGWTRPNEGAL
Ga0208193_10431712	3300025463	Peatland	MNDQAWLEGQKNGRIDRFRGTKNETAWIVLLNEGYSRSYSLGYRHGWTRPNEGPL
Ga0207928_10798102	3300025494	Arctic Peat Soil	MNDQAWLDGRKNGRVDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWTRPNEGPL
Ga0209110_10290972	3300027002	Forest Soil	MRDQAFLEGQKNGRIDRFRGTKNEYSWIVLLTDGYSRSYSLGYRQGWTRPHEGAL
Ga0209008_10380701	3300027545	Forest Soil	MNNQAWLDGQRNGRMDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWSRPNEGAL
Ga0209008_10821872	3300027545	Forest Soil	MSSMGPGEGAAMKDQAWLDGQKAGRIDRLRRTKNEYAWIVLLNEGYSRSFSLGYRHGWTRPDEGAL
Ga0209115_10320593	3300027567	Forest Soil	MKDQAWLEGQKNGRIDRFRGTKNEYVWVVLLIEGYSRNYSLGYRHGWTRPHEGAL
Ga0209166_100072169	3300027857	Surface Soil	MNDQAWLDGQKNGRSDRFRGTRNDQAWIVLLNEGYSRSYSLGYRHGWTRPNEGAL
Ga0209169_106245772	3300027879	Soil	MQDQAWLDGQKNGRIDRLRGTKNEQAWLVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0209624_102821572	3300027895	Forest Soil	MNDQAWIDGQKNGRGDRFRGTKNEHAWIVLLNEGYSRSYSLGYRQGWTRPNEGPL
Ga0209006_100049953	3300027908	Forest Soil	MVMKDQAFLEGQKNGRIDRFRGTKNEYSWIVLLTEGYSRNYSLGYRQGWTRPHEGAL
Ga0209006_107727341	3300027908	Forest Soil	KNGRGDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWTRPNEGAL
Ga0137415_101623873	3300028536	Vadose Zone Soil	MNDQAWLDGQKSGRSDRFRGTKNEHAWIVLLNEGYSRSYSLGYRHGWTRPNEGAL
Ga0302233_103208141	3300028746	Palsa	MNDQAWLDGQRNGRMDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWSRPNEGAL
Ga0302233_104178901	3300028746	Palsa	AMQDQAWLDGQKNGRIDRFRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0302219_100960022	3300028747	Palsa	MNDQAWLEGQKNGRIDRFRGTKNETVWIVLLTDGYSRSYSLGYRHGWTRPNEGPL
Ga0302219_103104451	3300028747	Palsa	PVTVVGTQSSGTSVEVLNGEGATMNDQAWLDGQRNGRMDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWSRPNEGAL
Ga0302303_100369524	3300028776	Palsa	MKDQAWLEGQKNGRIDRFRGTKNEYAWVVLLIEGYSRSYSLGYRQGWTRPHEGAL
Ga0302227_100287623	3300028795	Palsa	MVMKDQAWLEGQKNGRIDRFRGTKNEYAWVVLLIEGYSRSYSLGYRQGWTRPHEGAL
Ga0311369_103765302	3300029910	Palsa	QNMNGKAQRGGLAMQDKAWLDGQKNGRIDRLRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0311369_107334391	3300029910	Palsa	MGEATAMKDQAWFDGQKNGRIDRFRGTRNEYAWVILLIDGYSRSYSLGYRHGWTRPNDGP
Ga0311340_101720082	3300029943	Palsa	MNDQAFLDGQKNGRIDRFRGAKNEYAWVVLLNEGYSRSYSLGYRHGWTRPNEGPL
Ga0311340_101731591	3300029943	Palsa	MKDQAWFDGQKNGRIDRFRGTRNEYAWVILLIDGYSRSYSLGYRHGWTRPNDGPL
Ga0311340_102563781	3300029943	Palsa	VEVLNGEGATMNDQAWLDGQRNGRMDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWSRPNEGAL
Ga0311352_104280442	3300029944	Palsa	MDQAWLEGQKRGRNDRFRGTRNEQSWIILLNEGYSRSYSLGYRHGWTRPNEGPL
Ga0311371_101864102	3300029951	Palsa	MKDQAWFDGQKNGRIDRFRGTRNEYAWVILLIDGYSRSYSLGYRQGWTRPNEGPL
Ga0311339_105036562	3300029999	Palsa	MNGKAQRGGLAMQDKAWLDGQKNGRIDRLRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0311339_114034891	3300029999	Palsa	QAWLQGQKNGRIDRFRGTKDEYAWVVLLNEGYSRSYSLGYRHGWTCPNEGPL
Ga0311338_101411313	3300030007	Palsa	MKDKAWLDGQKNGRIDRLRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0311338_111061491	3300030007	Palsa	MKDQAWLEGVKNGRTDRLRGTKNEYAWVVLLNEGYSRSYSLGYRYGWTRPDEGPL
Ga0302306_103331021	3300030043	Palsa	MGVAATMKDQAWLEGLKNGRTDRFRGAKNESAWVVLLIDGYSRSYSLGYRHGWTRPNEGP
Ga0302177_103718511	3300030053	Palsa	MNDQAWLEGRKNGRIDRLRGTKNEYAWVVLLNEGYSRSYSLGYRYGWTRPDEGPL
Ga0302177_104689732	3300030053	Palsa	TTMSDQAWLDGQKNGRVDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWTRPNEGPL
Ga0302179_103509921	3300030058	Palsa	MDQAWLEGQKRGRNDRFRGTRNEQSWIILLNEGYSRSYSLGYRHGWTRPNEGAL
Ga0311353_112536722	3300030399	Palsa	RPQQNMNGKAQRGLAMQDQAWLDGQKNGRIDRFRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0311370_101779743	3300030503	Palsa	MQDKAWLDGQKNGRIDRLRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0311370_103865104	3300030503	Palsa	MKDQAWLDGQKNGRIDRFRGTRNEHAWIVLLNEGYSRNYSLGYRQGWTRPNEGPL
Ga0311370_108626822	3300030503	Palsa	MNDQAWLEGRKNGRIDRLRGTKNEYVWVVLLNEGYSRSYSLGYRHGWTRPDEGPL
Ga0311372_112261432	3300030520	Palsa	MSDQAWLDGQKNGRVDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWTRPNEGPL
Ga0311357_116122541	3300030524	Palsa	NMNGKAQRGLAMQDQAWLDGQKNGRIDRFRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0311354_106454781	3300030618	Palsa	MNDQAWLEGRKNGRIDRLRGTKNEYAWVVLLNEGYSRSYSLGYRHGWTRPD
Ga0302316_104460112	3300030646	Palsa	NMNGKAQRGGLAMQDKAWLDGQKNGRIDRLRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0170834_1028099781	3300031057	Forest Soil	MNKQAWLDGQKNGRGDRFRGTKNEQAWIVLLNEGYSRSYSLGYRQGWTRPNEGPL
Ga0265760_102506981	3300031090	Soil	MSSMGPGEGAAMKDQAWLDGQKAGRIDRLRRTKNEYAWIVLLNEGYSRSYSLGYRHGWTRPDEGAL
Ga0265760_103673242	3300031090	Soil	MNDQAWLEGQKNGRIDRFRGTKNETVWIILLTEGFSRSYSLGYRHGWTR
Ga0302324_1001180525	3300031236	Palsa	MKDQAWLEGLKNGRTDRFRGAKNESAWVVLLIDGYSRSYSLGYRHGWTRP
Ga0170818_1072849182	3300031474	Forest Soil	MKDQAWLDGQKNGRVDRLRGAKNETAWIVLLNEGYSRNYSLGYRQGWTRPNEGPL
Ga0302320_105948973	3300031524	Bog	MNDQAWLDGQKSGRFDRFRGAKNEQSWVVLLNDGYSRRYSLGYRHGWTRPNEGPL
Ga0302326_113730903	3300031525	Palsa	LAMQDKAWLDGQKNGRIDRLRGTKNEQAWVVLLNEGYSRNYSLGYRHGWTRPNEGAL
Ga0302326_115123861	3300031525	Palsa	MNDQAWLEGRKNGRIDRLRGTKNEYAWVVLLNEGYSRSYSLGYRHGW
Ga0302326_128615852	3300031525	Palsa	MKDQAWLEGQKNGRIDRFRGTKNEYAWVVLLIEGYSRNYSLGYRHGW
Ga0310686_1092618103	3300031708	Soil	MNDQAFLDGQKNGRIDRFRGTKNEYAWIVLLNEGYSRSYSLGYRHGWTRPHEGAL
Ga0310686_1197853633	3300031708	Soil	MNDQAWLEGQKNGRIDRFRGTKNETVWIILLTEGYSRSYSLGYRHGWTRPNEGPL
Ga0307478_102302961	3300031823	Hardwood Forest Soil	MNNQAWLEGQKNGRIDRFRGTKNETVWIILLTEGYSRSYSLGYRHGWTRPNE
Ga0348332_104437191	3300032515	Plant Litter	WLEGQKNGRIDRFRGTKNEYVWVVLLIEGYSRNYSLGYRHGWTRPHEVAL
Ga0370483_0299023_370_537	3300034124	Untreated Peat Soil	MNDQAWLDGQKNGRIDRLRGAKNEHAWIVLLNEGYSRSYSLGYRQGWTRPNEGAL
Ga0370515_0015927_969_1136	3300034163	Untreated Peat Soil	MNDQAWLDGRKNGRVDRLRGAKNEHAWIVLLNEGYSRSYSLGYRLGWTRPNEGPL
Ga0370515_0020053_1055_1222	3300034163	Untreated Peat Soil	MNDQAWLEGRKNGRIDRLRGTKNEYAWVVMLNEGYSRSYSLGYRHGWTRPDEGPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085916

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences