3300001414: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012

Overview

Basic Information

• IMG/M Taxon OID: 3300001414
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056245 | Ga0003460
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33167563
• Sequencing Scaffolds: 45
• Novel Protein Genes: 46
• Associated Families: 44

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
Not Available	16
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas nitroreducens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000407	Metagenome / Metatranscriptome	1172	Y
F001962	Metagenome / Metatranscriptome	611	Y
F002952	Metagenome / Metatranscriptome	518	Y
F003165	Metagenome / Metatranscriptome	504	Y
F004030	Metagenome / Metatranscriptome	456	Y
F004704	Metagenome	427	Y
F005099	Metagenome / Metatranscriptome	412	Y
F005456	Metagenome / Metatranscriptome	400	Y
F010567	Metagenome / Metatranscriptome	302	Y
F014525	Metagenome	262	Y
F015629	Metagenome	253	Y
F016442	Metagenome / Metatranscriptome	247	Y
F017216	Metagenome / Metatranscriptome	242	Y
F020950	Metagenome / Metatranscriptome	221	Y
F023193	Metagenome / Metatranscriptome	211	Y
F024683	Metagenome / Metatranscriptome	205	Y
F024932	Metagenome / Metatranscriptome	204	Y
F026935	Metagenome / Metatranscriptome	196	Y
F027988	Metagenome / Metatranscriptome	193	Y
F030198	Metagenome / Metatranscriptome	186	Y
F031184	Metagenome	183	Y
F032876	Metagenome / Metatranscriptome	179	Y
F036498	Metagenome / Metatranscriptome	170	Y
F043066	Metagenome / Metatranscriptome	157	Y
F046085	Metagenome / Metatranscriptome	152	Y
F052849	Metagenome	142	Y
F056180	Metagenome / Metatranscriptome	138	Y
F061320	Metagenome / Metatranscriptome	132	Y
F069485	Metagenome / Metatranscriptome	124	Y
F071786	Metagenome	122	Y
F073790	Metagenome / Metatranscriptome	120	Y
F076293	Metagenome / Metatranscriptome	118	Y
F077974	Metagenome	117	Y
F078011	Metagenome	117	Y
F081919	Metagenome / Metatranscriptome	114	Y
F083419	Metagenome / Metatranscriptome	113	Y
F089563	Metagenome / Metatranscriptome	109	Y
F092402	Metagenome / Metatranscriptome	107	Y
F092929	Metagenome	107	Y
F092930	Metagenome	107	Y
F098318	Metagenome	104	Y
F100037	Metagenome / Metatranscriptome	103	Y
F104096	Metagenome / Metatranscriptome	101	Y
F104111	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20174J14864_1000022	All Organisms → cellular organisms → Bacteria → Proteobacteria	3402
JGI20174J14864_1000037	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	3160
JGI20174J14864_1000042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3092
JGI20174J14864_1000246	All Organisms → cellular organisms → Bacteria → Proteobacteria	2064
JGI20174J14864_1000266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2026
JGI20174J14864_1000330	All Organisms → cellular organisms → Bacteria	1946
JGI20174J14864_1000517	All Organisms → cellular organisms → Bacteria → Proteobacteria	1723
JGI20174J14864_1000603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1648
JGI20174J14864_1000960	All Organisms → cellular organisms → Bacteria	1440
JGI20174J14864_1001063	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1399
JGI20174J14864_1001284	Not Available	1306
JGI20174J14864_1001602	All Organisms → cellular organisms → Bacteria	1201
JGI20174J14864_1002126	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1071
JGI20174J14864_1002252	All Organisms → cellular organisms → Bacteria	1047
JGI20174J14864_1002508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	997
JGI20174J14864_1002527	All Organisms → cellular organisms → Bacteria	994
JGI20174J14864_1002675	Not Available	973
JGI20174J14864_1002702	Not Available	969
JGI20174J14864_1002965	All Organisms → cellular organisms → Bacteria	934
JGI20174J14864_1002983	Not Available	932
JGI20174J14864_1003484	Not Available	865
JGI20174J14864_1003605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	852
JGI20174J14864_1003758	Not Available	835
JGI20174J14864_1004360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	779
JGI20174J14864_1004401	All Organisms → cellular organisms → Bacteria	776
JGI20174J14864_1004488	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	768
JGI20174J14864_1004510	Not Available	767
JGI20174J14864_1004645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → Halomonas nitroreducens	756
JGI20174J14864_1004976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	733
JGI20174J14864_1005102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	723
JGI20174J14864_1005272	All Organisms → cellular organisms → Bacteria	713
JGI20174J14864_1005298	Not Available	711
JGI20174J14864_1005337	All Organisms → cellular organisms → Bacteria → Proteobacteria	709
JGI20174J14864_1005413	Not Available	704
JGI20174J14864_1005932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675
JGI20174J14864_1006042	Not Available	669
JGI20174J14864_1006269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	657
JGI20174J14864_1007621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	602
JGI20174J14864_1007938	Not Available	590
JGI20174J14864_1008533	Not Available	571
JGI20174J14864_1008821	Not Available	562
JGI20174J14864_1009018	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	557
JGI20174J14864_1009197	Not Available	552
JGI20174J14864_1009584	Not Available	542
JGI20174J14864_1009916	Not Available	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20174J14864_1000022	JGI20174J14864_10000221	F077974	MKPNDMPLICLPMGLCDHDVATLLDFLYDLTEALERHYTGELIRRNYPRPDAPPRGPDTDLDDPPF*
JGI20174J14864_1000037	JGI20174J14864_10000371	F005099	MKPRTLSLLLLSSSVAIGTLLATPTLAYWQFMERPPGVEVKPSPRYASQKECEAAFKKAEAALKKAYPDRYPLVGSCEEYR*
JGI20174J14864_1000042	JGI20174J14864_10000429	F092929	MRGGKYYFSVAKADASPKFDRKSPNSQSKKTNGVERKKIRRPNNFKTNDWYEKAALSMAISVNHQR*
JGI20174J14864_1000246	JGI20174J14864_10002462	F043066	MAAAEQPKYEPGQVIARFCCGEPMKLIKAIPRIGSYPELQTYRCERCHNAETIEVKMEGFQPRR*
JGI20174J14864_1000266	JGI20174J14864_10002666	F083419	MPKKRGKKYIEAAKKVEAALASNGNGGLDPAAAVQL
JGI20174J14864_1000330	JGI20174J14864_10003301	F081919	MAAPSVADGVQKHSVAYWRDLVFSRLLPALFFSIFLARQLLFVWDGLRSVRQASDYLFLLQQLLALAYFTMLVVLYSTRLPKRGTDHRAAVIFIAFTGTFSAIAAPFLPGGGRHEGLVLAAD
JGI20174J14864_1000517	JGI20174J14864_10005172	F026935	VTEVFIRFPVNCPICKQEWTSQRTKGEILDAFDNNKPIRVYAECHDWHWDLSESERNELAARIRV*
JGI20174J14864_1000603	JGI20174J14864_10006032	F017216	MTNVKVTCNCGAIYEVIETKGPSRDPKPFKCVLCEKVLFAWEGTNVGQFRLVARPEADRE
JGI20174J14864_1000960	JGI20174J14864_10009602	F036498	MPRSVYGLGMTRRKRKGSGPQPTAKTQSSDQAPGEEVVQVNDKYKGGEPAPDMEQEEQAQHQTGG*
JGI20174J14864_1001063	JGI20174J14864_10010631	F014525	MKQLQLFMRVAATLALLYAGAPFHSERASAQVFDFGQVDAFESMGTGTQRGGSPPKTIVDDGDWHTVFFTILESDSDAKIYWKSKDGDQTTIIHGPSVKAFQTAGQFKIEALGNENHSFKYGYVLFRLKNSKGEKT*
JGI20174J14864_1001284	JGI20174J14864_10012841	F030198	MMAIGPPNDSNAVRSNRWSSTGIGGVRPMALTNGRGSDQIAILGPRSGCSAAWIGILGILRRPAPWRGATSIITSRKLKSP*
JGI20174J14864_1001602	JGI20174J14864_10016021	F005456	VPYVEDKTTEGGSNSPSDSDLTRMIRAEVDTWTPRRGADWTDVLIRIAGTGPSPWLVYTTASAALVVILIAAYLVGTAFQLGALAPPAQVHLH*
JGI20174J14864_1002126	JGI20174J14864_10021262	F032876	VQPGIVGIRGAITAAWEEDLRAVRQDRYDTDTGKEALAFIQRCYALVSDLRGPIQKAWGQGGHVHVADSPNVVGPGPRVSQTRIKLRNHGELVAVEAFTYTDGTSKHNPSLGLDREIRVVGTGALTFVQELYRTTVDFLQVALSLDLALGGSAWLFEQVVANHFVATGKWPALGDVYQRATREFAIEDSFERVGAM
JGI20174J14864_1002252	JGI20174J14864_10022522	F052849	MLKILVADAVIVEPVSTPKFPANRDINREFRQIRSLCEILNADTRAISKTFSQIPYTTEQGIISAEQGILT*
JGI20174J14864_1002508	JGI20174J14864_10025081	F078011	MLTLKRASKHRPGGPWSDDDYDVFDGERHVGRIMWTHAAPEDRRWFWTITARVPQQPHD
JGI20174J14864_1002527	JGI20174J14864_10025272	F024932	MRCLAALTIAVTALALQPAPVTAISAWGSSQYGDPPAWCTKFSDMWMATVVTNDPLVGTNPEQDTFYGFHPNPGYDDWYGYFYGDFRGTPGDSSGWVRLLHETYPHHYHWNFATNGWAVHGHAKEYIAYYNWTFGGQCGRGAYGNNSPPPYMADQYGYPVVDIYVDSVPPFNPQPYVAAITPSSVAFTWDPVADRGDGAGRDYFMSGLDHYVSWLTIGDRPDRLQLATTNLPRMVSLAGMKPQETACLHVQAVD
JGI20174J14864_1002675	JGI20174J14864_10026751	F069485	MASGLCVPHQQAAHMAAPTEGQNIKNTLANGEPSTHGA
JGI20174J14864_1002702	JGI20174J14864_10027022	F015629	MLMRHSTLTLKHASKSRPSGTWSNDDYDVFDGDRHIGRILLTHAAPREAPWFWSITARVPQYPHDRGYATTREEAMAAFKARSEA*
JGI20174J14864_1002965	JGI20174J14864_10029651	F016442	ASQSIFLNKAGPQAYPLFFIVLALAGWPMVALQGVVTRRFGVGRAFRITLAANVIAAVAVFTAYVVREDATVAFSAYVVYSVAFELVMLTFWSFVSQHFNVLEGKRIFPVIAAGSSIGYILAGVTTTVVAVYATEPLIFVWAFGSLAAAIMSHGLERTLFRPAFVDESDEFLADQEAALKKHGVVAVLKGAFRYLTGSQLVLALILLALALQVASRLGDYLVAVLFVQATHNNLQSLTILIGNAWLASYAVQLVVSLFVTPWVLSKLGVKNALMALPMFTLIGFTAVAIAPVLSTALFLFVVRNGLQTGL
JGI20174J14864_1002983	JGI20174J14864_10029831	F010567	MHLGLAKELRDAGFPNIQDVQHRQGREFLASDDRVSVYSLGELAPAENWFIPNLKELIEACEEKEGYDHFILEHRQLGWFASIEIQDAQTNSGSHPTAEEAVARLWLVLKKQ*
JGI20174J14864_1003484	JGI20174J14864_10034841	F004704	MSERRFALVDFTHMNRAGCLRLYEAGHTYALSRAIAHAATKRELVAKQRPPGWIPPSMFQLPKVLTEAEVIEADAELKALQRHS
JGI20174J14864_1003605	JGI20174J14864_10036052	F089563	MSVLLAQRPKKTYQRGAVVCEKCAAPIYVYKLKTLPDEFSVRCPHCGGRGIYLKRAIAIEEAPERRKKPRR*
JGI20174J14864_1003758	JGI20174J14864_10037582	F104111	LPTTLPHRRRADEKPSRARTVFDFLFNTALIVSALILTFIVLVREEQYAFGQPESPAQAIEQAAQQGLLDTTGESPVIPPSN*
JGI20174J14864_1004360	JGI20174J14864_10043601	F024683	FPSHRRHSMRVRLIRPGNMAQAIASHLPTLQKFASEVVPALREAAAVERGHRRTGESP*
JGI20174J14864_1004401	JGI20174J14864_10044011	F104096	YLVVQKAAMQAMDDAGGAQGVVDPGFRSLLEQNHEVMSRIGAKLDQVFDPWAGLEHTDLAYERLAIGRALRT*
JGI20174J14864_1004488	JGI20174J14864_10044881	F001962	VGAQAVILKSETYNFHRLDLTRQAGFIVTVYDEDGLRLAATMPCSTPAEAFAEARKIIDN
JGI20174J14864_1004510	JGI20174J14864_10045102	F020950	GTVIANAYKHRDSSTTAPAKSEGSGNMKTSIVIAAFALNALAIFAGGCAEHRMDAAASRDDTRRTEFEHCRAQGRTDCDAILNAPVNSNTPRGDAVRDQEARAAYDRCVARGGSDCDNLLHR*
JGI20174J14864_1004645	JGI20174J14864_10046452	F004030	MEDKPNREEFDTGLSKIRHEIKGLLVTHGFFGSITFVDIDPADPVPSGSKIEIVVKGRTAERSFSRQDVEGCRLRVGGAVLAGIISMVEELSK*
JGI20174J14864_1004976	JGI20174J14864_10049762	F104111	PHRRRADEKHSPARIVFDFLFNAALVVSALILTFIVLVREEQYAFGQLQSPAQVIQKGPLDTTGESLVIPPSN*
JGI20174J14864_1005102	JGI20174J14864_10051021	F031184	MAELPKLDVVIGNNFGHLPMFIGAEKGFFKKHGVDAKMLVVDTGTD
JGI20174J14864_1005272	JGI20174J14864_10052721	F027988	LNTGAALPIYWSLIFGSGRRLDRLREAWSSYWTLFRGLVIPACVLFGLVVFRLLAGG*
JGI20174J14864_1005298	JGI20174J14864_10052981	F046085	MARLNPSFTTFVTACVLAVHLVLLPGLYFGVGYIIRKSHEDLFIHHARTFARVIDEEFEVGAALDSEATTSDLLDLAIIHGEGVYAELADGDHSVRSPLGTPNIKAASRTDLGFAQGGDQVYFVVLPILRAGHSAELRLGF
JGI20174J14864_1005337	JGI20174J14864_10053371	F073790	MSGFDTLNAAWMVRDGPAPAPGEAVLEYTRELEKFLAEIERRAFRMAQVALRDPD
JGI20174J14864_1005413	JGI20174J14864_10054133	F092930	SATCAPTACAWRDDDYDVFDGDQHIGRIVWTHAAPADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRALA*
JGI20174J14864_1005716	JGI20174J14864_10057162	F100037	LLPLFRAILVWTVILAGVILVRMDPPTAVTQAVAVTQLSAYDRLSVVQQTRNQRVQAAQMAQVDAWSAELKQGLADYQAQQDALAAAQAQAAR
JGI20174J14864_1005932	JGI20174J14864_10059321	F003165	LITAPPTETYKIKEIAMAKVIEFYVPESFRKQLKWARQLQRGKVIDFCSQTKKSA*
JGI20174J14864_1006042	JGI20174J14864_10060421	F000407	MLRSTAVAIALGLLALAGCGHSGYAVRSVPSIAADNVGKPVSRLHEVFGEPRKIDQTATKWVYVWFLPQKPDGAPTGFHGCEMEVTVDARSQRVLGYSLSNIGWSNCRQVERRIRVAER*
JGI20174J14864_1006269	JGI20174J14864_10062693	F056180	RTANEVNGHIIHVRQHQIRQLIDIVRGGPAITYGPQGKTFTKALRALARA*
JGI20174J14864_1007621	JGI20174J14864_10076211	F078011	MLVLKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAGPADRQRNAHTA
JGI20174J14864_1007938	JGI20174J14864_10079381	F023193	MYRRKVMVTAAAVFAIGVAFAGQPTSLRADWGERVPRQGSSWVPGTNQLMSAYE
JGI20174J14864_1008533	JGI20174J14864_10085332	F076293	KEARAIAERRHVLEWRVAAAAKFDSPLLPWTKNARARARLVQMRALPREEDVCIAILRKHKMALDPPEVHP*
JGI20174J14864_1008821	JGI20174J14864_10088211	F071786	MSSIQPRSWDRLTLAAVAGGGIALSAILAVHFSNTQIEERRHQLMVEATGFADDLEQYLKSREMIAKTVSTVFEAPALSAPHPLGSVGKKVLALTPEIGVMAWIPQIDSSRIQEVLNALSAAGRPPRLYGPNSETLDVT
JGI20174J14864_1009018	JGI20174J14864_10090182	F092402	MTMYITPQDELHVEYQGIALTCPHCQTLTHLTAVATPKFEDL
JGI20174J14864_1009197	JGI20174J14864_10091971	F061320	EYLRHYDVRGAERTRTLHYFYPTRGYQYAIIAEHGSYLRKACSYLCASHVGTGVVQDPAFLDPMQHYEELYAEYFHLYCSTLSPIDGGESASERSLLPLLKRQMNEWRWMILNPRQSLPRVKREFEMRLSTGDTQRLPQLKVGTKVP*
JGI20174J14864_1009584	JGI20174J14864_10095841	F098318	MPLADGSEGGIFAGMARYKGRVSPKAIERDFPHVVEIAVPPCGLGKRLDDMHAFHAAKGVKACLGLGRREDNLDYLRWYFTSPTTAAAFAAEFGGTYLTPARK*
JGI20174J14864_1009916	JGI20174J14864_10099161	F002952	MVGKVNAKRKTPDNAIALQVGVQVIAFVCVLIWGATNVFFSWANAITIGLVFMYLLCNIGVVRYYLTEGRAQFNVLLHLVVPLVASAAGILVVWKSYFSPFTSTGPVYWGLMTFXVVVVLTVVILIYLKVTGKEDWMRRAQLVFEQTGGH*