Metagenome Family F078011

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078011
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	54 residues
Representative Sequence	MPTLKRASKSRPSGEWSDDDYDVFDGERHIGRIMWTHAAPEDRRWFWTITARVP
Number of Associated Samples	81
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	30.77 %
% of genes near scaffold ends (potentially truncated)	54.70 %
% of genes from short scaffolds (< 2000 bps)	92.31 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.957 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (41.880 % of family members)
Environment Ontology (ENVO)	Unclassified (54.701 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (84.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 31.71% Coil/Unstructured: 68.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF04392	ABC_sub_bind	3.42
PF03330	DPBB_1	2.56
PF15956	DUF4760	2.56
PF08238	Sel1	1.71
PF04964	Flp_Fap	1.71
PF03734	YkuD	0.85
PF07366	SnoaL	0.85
PF03952	Enolase_N	0.85
PF09954	DUF2188	0.85
PF11272	DUF3072	0.85
PF00797	Acetyltransf_2	0.85
PF13795	HupE_UreJ_2	0.85
PF00313	CSD	0.85
PF13467	RHH_4	0.85
PF10571	UPF0547	0.85
PF00589	Phage_integrase	0.85
PF03992	ABM	0.85
PF02586	SRAP	0.85
PF04226	Transgly_assoc	0.85
PF00027	cNMP_binding	0.85
PF13276	HTH_21	0.85
PF13489	Methyltransf_23	0.85
PF12071	DUF3551	0.85
PF01434	Peptidase_M41	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.42
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	1.71
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.85
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.85
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.85
COG2162	Arylamine N-acetyltransferase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.85
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.96 %
Unclassified	root	N/A	35.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.96 %
Unclassified	root	N/A	35.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.96 %
Unclassified	root	N/A	35.04 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.41 %
Unclassified	root	N/A	35.04 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	49.57 %
Unclassified	root	N/A	35.04 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.50 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.38 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.85 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.82 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	4.27 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.42 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.56 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.82 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	4.27 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.56 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.56 %
Falsiroseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Falsiroseomonas	0.85 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.82 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.42 %
Bradyrhizobium sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	2.56 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.56 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.85 %
Falsiroseomonas bella	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Falsiroseomonas → Falsiroseomonas bella	0.85 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.82 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.42 %
Bradyrhizobium sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	2.56 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.56 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.85 %
Rhizobium leguminosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	0.85 %
Falsiroseomonas bella	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Falsiroseomonas → Falsiroseomonas bella	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090008\|P3_DRAFT_NODE_409022_len_992_cov_16_182459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1042	Open in IMG/M
2124908028\|beta3_all_NODE_92444_len_5118_cov_16_384331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5168	Open in IMG/M
2124908035\|B3_GZOS_CLC_ConsensusfromContig117754	All Organisms → cellular organisms → Bacteria → Proteobacteria	1809	Open in IMG/M
2124908035\|B3_GZOS_CLC_ConsensusfromContig122489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	723	Open in IMG/M
2124908035\|B3_GZOS_CLC_ConsensusfromContig92164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1118	Open in IMG/M
2124908039\|B3_v_NODE_9759_len_580_cov_42_682758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	630	Open in IMG/M
2124908043\|A2_c1_ConsensusfromContig20802	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
2140918008\|ConsensusfromContig284364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1301	Open in IMG/M
2140918008\|ConsensusfromContig343258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
2140918024\|NODE_126029_length_889_cov_21.839146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	939	Open in IMG/M
2140918024\|NODE_131732_length_599_cov_7.951586	Not Available	649	Open in IMG/M
3300001385\|JGI20193J14888_1031495	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300001385\|JGI20193J14888_1039470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	601	Open in IMG/M
3300001394\|JGI20191J14862_1009313	All Organisms → cellular organisms → Bacteria → Proteobacteria	2162	Open in IMG/M
3300001394\|JGI20191J14862_1017102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1363	Open in IMG/M
3300001407\|JGI20192J14887_1007568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1290	Open in IMG/M
3300001414\|JGI20174J14864_1002508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	997	Open in IMG/M
3300001414\|JGI20174J14864_1007621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	602	Open in IMG/M
3300001527\|A3513AW1_1498657	Not Available	738	Open in IMG/M
3300001536\|A1565W1_11814608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	987	Open in IMG/M
3300001538\|A10PFW1_10494236	Not Available	560	Open in IMG/M
3300001870\|JGI24129J20441_1069200	Not Available	707	Open in IMG/M
3300002068\|JGIcombinedJ21913_10279650	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300002549\|JGI24130J36418_10059390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	965	Open in IMG/M
3300002549\|JGI24130J36418_10123022	Not Available	573	Open in IMG/M
3300002549\|JGI24130J36418_10145550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300003369\|JGI24140J50213_10117224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	869	Open in IMG/M
3300003369\|JGI24140J50213_10126430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	829	Open in IMG/M
3300003861\|Ga0031654_10142455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300003994\|Ga0055435_10034070	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300005938\|Ga0066795_10020384	Not Available	1883	Open in IMG/M
3300005947\|Ga0066794_10237429	Not Available	547	Open in IMG/M
3300005980\|Ga0066798_10078006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	993	Open in IMG/M
3300005995\|Ga0066790_10259837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	741	Open in IMG/M
3300006055\|Ga0097691_1047986	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300006640\|Ga0075527_10178121	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300006642\|Ga0075521_10094447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Falsiroseomonas → Falsiroseomonas bella	1365	Open in IMG/M
3300006795\|Ga0075520_1006853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5758	Open in IMG/M
3300006795\|Ga0075520_1335678	Not Available	617	Open in IMG/M
3300006864\|Ga0066797_1024665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2100	Open in IMG/M
3300006949\|Ga0075528_10007129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2610	Open in IMG/M
3300006949\|Ga0075528_10184905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	563	Open in IMG/M
3300006950\|Ga0075524_10091479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1294	Open in IMG/M
3300009029\|Ga0066793_10170465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1269	Open in IMG/M
3300009029\|Ga0066793_10844002	Not Available	520	Open in IMG/M
3300009524\|Ga0116225_1384043	Not Available	625	Open in IMG/M
3300009645\|Ga0116106_1071399	Not Available	1138	Open in IMG/M
3300009651\|Ga0105859_1056332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
3300009651\|Ga0105859_1152486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	654	Open in IMG/M
3300009661\|Ga0105858_1292455	Not Available	509	Open in IMG/M
3300009839\|Ga0116223_10360932	Not Available	859	Open in IMG/M
3300009839\|Ga0116223_10875096	Not Available	513	Open in IMG/M
3300010341\|Ga0074045_10136421	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300010341\|Ga0074045_10203159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1326	Open in IMG/M
3300010341\|Ga0074045_10431696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300010379\|Ga0136449_101542728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1013	Open in IMG/M
3300010379\|Ga0136449_103940122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	556	Open in IMG/M
3300010379\|Ga0136449_104429371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300012019\|Ga0120139_1025866	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300012019\|Ga0120139_1089466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	765	Open in IMG/M
3300013770\|Ga0120123_1078505	Not Available	734	Open in IMG/M
3300014054\|Ga0120135_1002456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1659	Open in IMG/M
3300014155\|Ga0181524_10155438	Not Available	1177	Open in IMG/M
3300014159\|Ga0181530_10221441	Not Available	1029	Open in IMG/M
3300014165\|Ga0181523_10687939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300014200\|Ga0181526_10378160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	900	Open in IMG/M
3300014502\|Ga0182021_11677175	Not Available	765	Open in IMG/M
3300014502\|Ga0182021_12336125	Not Available	643	Open in IMG/M
3300014638\|Ga0181536_10015628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6542	Open in IMG/M
3300014638\|Ga0181536_10308290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	734	Open in IMG/M
3300014829\|Ga0120104_1111943	Not Available	552	Open in IMG/M
3300014838\|Ga0182030_10806677	Not Available	858	Open in IMG/M
3300017994\|Ga0187822_10303805	Not Available	564	Open in IMG/M
3300018032\|Ga0187788_10028586	Not Available	1816	Open in IMG/M
3300018043\|Ga0187887_10885081	Not Available	528	Open in IMG/M
3300018047\|Ga0187859_10081907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1699	Open in IMG/M
3300025457\|Ga0208850_1023895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300025457\|Ga0208850_1025618	All Organisms → cellular organisms → Bacteria → Proteobacteria	1033	Open in IMG/M
3300025481\|Ga0208079_1021992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1886	Open in IMG/M
3300025494\|Ga0207928_1105351	Not Available	515	Open in IMG/M
3300025504\|Ga0208356_1064694	Not Available	714	Open in IMG/M
3300025527\|Ga0208714_1115091	Not Available	520	Open in IMG/M
3300025579\|Ga0207927_1122885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300025579\|Ga0207927_1137474	Not Available	520	Open in IMG/M
3300025581\|Ga0208355_1044105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1126	Open in IMG/M
3300025582\|Ga0209386_1102891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	509	Open in IMG/M
3300025604\|Ga0207930_1029942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1467	Open in IMG/M
3300025604\|Ga0207930_1048806	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300025604\|Ga0207930_1059727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	932	Open in IMG/M
3300025619\|Ga0207926_1061127	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300025619\|Ga0207926_1090642	Not Available	759	Open in IMG/M
3300025625\|Ga0208219_1022595	Not Available	1820	Open in IMG/M
3300025625\|Ga0208219_1151018	Not Available	505	Open in IMG/M
3300025650\|Ga0209385_1003977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6356	Open in IMG/M
3300025650\|Ga0209385_1193789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300025664\|Ga0208849_1145460	Not Available	619	Open in IMG/M
3300025725\|Ga0209638_1042335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1928	Open in IMG/M
3300025846\|Ga0209538_1188583	Not Available	775	Open in IMG/M
3300025852\|Ga0209124_10202815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	782	Open in IMG/M
3300025854\|Ga0209176_10088467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	724	Open in IMG/M
3300025854\|Ga0209176_10107748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium sediminis	666	Open in IMG/M
3300025878\|Ga0209584_10085485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1152	Open in IMG/M
3300025878\|Ga0209584_10185128	Not Available	791	Open in IMG/M
3300026223\|Ga0209840_1107732	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300026273\|Ga0209881_1161627	Not Available	559	Open in IMG/M
3300027783\|Ga0209448_10060375	Not Available	1275	Open in IMG/M
3300027854\|Ga0209517_10295797	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300027854\|Ga0209517_10392886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	782	Open in IMG/M
3300030659\|Ga0316363_10315627	Not Available	622	Open in IMG/M
3300031368\|Ga0307429_1016159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2559	Open in IMG/M
3300031368\|Ga0307429_1053014	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300031368\|Ga0307429_1076210	Not Available	983	Open in IMG/M
3300032160\|Ga0311301_11841471	Not Available	718	Open in IMG/M
3300032160\|Ga0311301_12900268	Not Available	520	Open in IMG/M
3300032782\|Ga0335082_11206604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	624	Open in IMG/M
3300033513\|Ga0316628_100098873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3264	Open in IMG/M
3300033513\|Ga0316628_101591324	Not Available	870	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.32%
Aquatic	Environmental → Aquatic	13.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.32%
Freshwater	Environmental → Aquatic → Freshwater	10.26%
Marine	Environmental → Aquatic → Marine	3.42%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.40%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.56%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.85%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	58.12%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	12.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.40%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.56%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	41.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	9.40%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	5.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.13%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.56%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.56%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.56%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.56%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.71%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.71%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.71%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.85%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
2124908028	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2124908035	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2124908039	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4	Environmental	Open in IMG/M
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
2140918024	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300001385	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012	Environmental	Open in IMG/M
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300001407	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012	Environmental	Open in IMG/M
3300001414	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012	Environmental	Open in IMG/M
3300001527	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-5cm-13A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300001870	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211	Environmental	Open in IMG/M
3300002068	Barrow Graham LP Ref core NGADG0004-212 (Barrow Graham LP Ref core NGADG0004-212,NGADG0011-311, ASSEMBLY_DATE=20131010)	Environmental	Open in IMG/M
3300002549	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014054	Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014829	Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025581	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025582	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two (SPAdes)	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025725	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)	Environmental	Open in IMG/M
3300025846	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-211 (SPAdes)	Environmental	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025854	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300026223	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)	Environmental	Open in IMG/M
3300026273	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031368	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P3_DRAFT_00825210	2088090008	Soil	MLVLKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAGPADRQRNAHTAS
beta3_all_00116790	2124908028	Soil	MLTLKRASKSRPSGQWSDDDYDVFDDGQHIGRIVWRYAAPEYRQRTAHTAS
B3_GZOS_CLC_01767520	2124908035	Soil	MLILKSASKSRSSGEWSADDYNVFEDERHIDRILWTHAAPEDRRWF
B3_GZOS_CLC_01051770	2124908035	Soil	LVVQELARINDAMLILKLASKSRPSGQWAANDVDVFAGESHIGRIMWTHAAPADRRWFWTITARVPQ
B3_GZOS_CLC_00180810	2124908035	Soil	MLILKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAAPADRQRNAHTAS
B3_v_00738370	2124908039	Soil	MLVLKRASKSRPSGEWSDDDYDVFDGDRRIGRIMWTHAGPADRQRNAHTAS
A2_c1_01042110	2124908043	Soil	MLLLKRASKSRPSGEWSDDDYDVFDGNQHIGRIMWTHAAPADRRWFTPD
Bog_all_C_02056500	2140918008	Soil	MLTLKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAAPEDR
Bog_all_C_01237070	2140918008	Soil	MLILKRASKSRPSGQWRDDDYDVFNRDRHIGRILWTHAAPSDR
B_all_v_01200820	2140918024	Soil	MLILKRAFKSRPSGQWSDDDYEVFASNRLIGRIMWTHATPQDLRWFWTITARVPQYPHDRGXXXX
B_all_v_01456590	2140918024	Soil	MPLLKRASKSHPSGQWSDDDYDVFDGARHIGRIMWTHAASRDTPWF
JGI20193J14888_10314953	3300001385	Arctic Peat Soil	MLFLKRASKSRPSGQWSDDDYDVFEGDRHIGRIMWTHAAPADRRWFKRQF
JGI20193J14888_10394701	3300001385	Arctic Peat Soil	MLTLKRASKSRPSGEWSDDDYDVFNGDRHIGRIMWTHAAPEDRRWFWTITARVPQST
JGI20191J14862_10093132	3300001394	Arctic Peat Soil	MLILKRASKSRPSGEWSDDDYDVFDADRHIGRIMWTHAAPEDRRRFWTIGAGAAVPA*
JGI20191J14862_10171022	3300001394	Arctic Peat Soil	MLLLKRASKSRPSGEWSDDDYDVLDGDRHVGRILWTHAAPEDRRWFWTITARVPQ*
JGI20192J14887_10075683	3300001407	Arctic Peat Soil	VLKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAGPADRQRNAHTAS*
JGI20174J14864_10025081	3300001414	Arctic Peat Soil	MLTLKRASKHRPGGPWSDDDYDVFDGERHVGRIMWTHAAPEDRRWFWTITARVPQQPHD
JGI20174J14864_10076211	3300001414	Arctic Peat Soil	MLVLKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAGPADRQRNAHTA
A3513AW1_14986572	3300001527	Permafrost	MLTRKRAPKHRSGGPRSDDDYDVLDGERHIGRIMWTHAAPEDRERNAHTAN*
A1565W1_118146082	3300001536	Permafrost	MLVLKRASKSRPSGQWSDDDYDVIDGDQHIGRILWTHAAPEDRQRNAHTAS*
A10PFW1_104942361	3300001538	Permafrost	MLTLKRASKSRPSGQWSDDDYDVFDGDRHIGRILWTYAAPEDRRWFWTITARVPQYPHD
JGI24129J20441_10692003	3300001870	Arctic Peat Soil	AGKSSTSMRQIASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAGPADRQRNAHTAS*
JGIcombinedJ21913_102796502	3300002068	Arctic Peat Soil	VQELARINDAMLILKLASKSRPSGQWAANDVDVFAGESHIGRIMWMHAAPADCKWFWTITARVPQQQHDRGYA
JGI24130J36418_100593902	3300002549	Arctic Peat Soil	MLTLKRASKSRPSGQWSDDDYDVFDDGQHIGRIVWRYAAPEYRQRTAHTAS*
JGI24130J36418_101230222	3300002549	Arctic Peat Soil	MLTLKRASKHRPGGPXSDDDYDVFDGERHVGRIMWTHAASKETPWFWTITARVPQS
JGI24130J36418_101455502	3300002549	Arctic Peat Soil	MLVLKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAGPADRQRNAHTAS*
JGI24140J50213_101172244	3300003369	Arctic Peat Soil	MQELARINDAMLILKLASKSRPSGQWAANDVDVFAGESHIGRIMWMHAAPADCKWFWTITARVPQQQH
JGI24140J50213_101264301	3300003369	Arctic Peat Soil	MPTLKRASKSRPSGEWSDDDYDVFDGERHIGRIMWTHAAPEDRRWFWTITARVP*
Ga0031654_101424552	3300003861	Freshwater Lake Sediment	MLILKRASKSRPTGEWSDDDYDVFEDDQHIGRIMWTHAAPQGRRWFWTITARVPQSTHDRGYAA
Ga0055435_100340703	3300003994	Natural And Restored Wetlands	MLILKRASKSRVSGQWPDDDYDVFDGDKNIGGILWTYAAPAECRWF*
Ga0066795_100203842	3300005938	Soil	MLLLKRAAKSRPSGQWSHDDYDVFDGDRHIGRIMWTHAAPADRR*
Ga0066794_102374292	3300005947	Soil	MLILKRASKSRPDGTWSDDDYDVFDGEQRIGRIVWTYAAPEDRRWFWTITARVPQYPH
Ga0066798_100780063	3300005980	Soil	MLTLKRASKHRPGGPWSDDDYDVFDGERHVGRIMWTHAASKETPWFWTITARVPQSTADRGYAAS
Ga0066790_102598371	3300005995	Soil	MLTLKRASKSRPSGQWSDDDYDVFDGGQHIGRIVWRYAAPEYRQRTAHLRVNC
Ga0097691_10479861	3300006055	Arctic Peat Soil	MLILKSASKSRPSGQWSDNDYDVCDGASHIGRIMWTHAAPEDRRWFWTI
Ga0075527_101781211	3300006640	Arctic Peat Soil	MLILKSASKSRSSGDWSADDYDVFEGERHLGRILWTHAAPEDRRWF*
Ga0075521_100944472	3300006642	Arctic Peat Soil	LHILKQANKSHPSGQWSDDDYDVFDGARHIGRIMWTHAASRDTPWF*
Ga0075520_10068538	3300006795	Arctic Peat Soil	MLTLKHASKSRPNGQWSHDDYDVLDGDQHIGRIMWTHEASRDTPWFWTITARVPQSTHDRGLRGEP*
Ga0075520_13356781	3300006795	Arctic Peat Soil	MLTLKPASKFRPRGPWDKDDYGVFGSDHYIGHIMWTHAASRETLWFWTITERVPQLRG*
Ga0066797_10246654	3300006864	Soil	MLTLKRASKSRPSGQWSDDDYDVFDGGQHIGRIVWRYAAPEYRQRTAHTAS*
Ga0075528_100071297	3300006949	Arctic Peat Soil	MLILKRASKSRPSGQWSDDDYDVFDGDQLIGRIMWTYAASRDTPWF*
Ga0075528_101849051	3300006949	Arctic Peat Soil	MLILKRASKSRPSGQWSDDDYDVFDGEQHIGRIMWTHATPADHRWFWTITARVPQ
Ga0075524_100914792	3300006950	Arctic Peat Soil	VQELARINDAMLILKLASKSRPSGQWAANDVDVFAGESHIGRIMWMHAAPADCKWFWTITARVPQQ*
Ga0066793_101704652	3300009029	Prmafrost Soil	MLILKRASKSRPSGQWSDDDYDVFDGDRHIGRILWTYAAPEDRRWSWTITARVRVIAP*
Ga0066793_108440022	3300009029	Prmafrost Soil	MLTFKRTIKSRLSGQWSDDDYDVWDGNQHIGRIMWTHAGPEDCRWFW
Ga0116225_13840431	3300009524	Peatlands Soil	MLTLKRATKSRPSGTWSDDDYEVFDGDQHIGRIMWTHAALAGRRWFWTVTARVPQ*
Ga0116106_10713993	3300009645	Peatland	MLLLKRASKSRPDGQWSDDDHDVFDGDQHIGRILWTYAAPEDRRWFWTITARVP
Ga0105859_10563323	3300009651	Permafrost Soil	MLLLKRASKSRPGGPWPDDDYNVFDGNRHIGRILWTHAASRDTPWFWTITARVP
Ga0105859_11524861	3300009651	Permafrost Soil	MLILKRASKSRLSGQWSDDDYDVIDGDQHIGRILWTHAAPEDRQRNAHTAS*
Ga0105858_12924552	3300009661	Permafrost Soil	MMLPDGVSVMLILKQANKSRPSGEWSDDDYDVFDGDQHIGRIMWTHAASADRQR
Ga0116223_103609322	3300009839	Peatlands Soil	MLILKRASKSQLRGEWSEDDYDVFDGDQHTGRIMLHPQAPEGAPWFWTITAQVTPRRSLWRKYE*
Ga0116223_108750961	3300009839	Peatlands Soil	MMLPDGVSVMLTLKRASKSRPSGQWSDDHYDVFDGDQHIGLIMWTHAASRDTPWF*
Ga0074045_101364213	3300010341	Bog Forest Soil	MMLPDGVSVMLTLKRASKSRPSGQWSDDHYDVFDGDQHIGLIMWTHAASRDTHWF*
Ga0074045_102031591	3300010341	Bog Forest Soil	MLLLKRASNSRSSGQWSDDDYDVFDGDQHIGRIMLNPQAPQGQPWFWTTTARVPQC
Ga0074045_104316962	3300010341	Bog Forest Soil	MLLLKRASKSRPDGQWSDDDYDVFDGDRHIGRILWTYAAPEDRRWFWTITARVPSSRMI*
Ga0136449_1015427282	3300010379	Peatlands Soil	MLTLKRASKHRAGGPWSDDDYDVFDGDRHIGRIMWTHAASRETPWFWTITARVPHFKAAWGV*
Ga0136449_1039401222	3300010379	Peatlands Soil	MLLLKCASNSRPSGQWSDDDYDVFDDDRHIGRIMWTHAAPEDRCWFLTITARVPQYPHDRGYA
Ga0136449_1044293712	3300010379	Peatlands Soil	MLTLKRASKSRPGGPWSDDDYDVFYGDQHIGRILWTHAANRDAPWIWTKTARAASKRWQI
Ga0120139_10258662	3300012019	Permafrost	MLILKRASKSRPGGQWSDDDYDGFDGERQIGRILWTHAAPEDRERNAHTAN*
Ga0120139_10894661	3300012019	Permafrost	MLTLKRASKHHPGGPWSDDDYDVFDGEWHIGRIMWTHAASRDTPWFWSITARVPQQRIYRGYASLA*
Ga0120123_10785051	3300013770	Permafrost	MLTLKRACKSRPAAIGRTTTTTFEGDQHIGRIMWTHAAPADRRWFWTITA
Ga0120135_10024563	3300014054	Permafrost	MLTRKRAPKHRSGGPRSDDDYDVFDGEQHIGRIMWTHAAPEDRERNAHIAN*
Ga0181524_101554381	3300014155	Bog	MLTLKRASKSRPDGQWSDDDYDVFDREKHIGRILWTYAAPEDRHWFWT
Ga0181530_102214413	3300014159	Bog	MMLPDGVSVMLTLKRASKHRPGGWSDDDYDVYDRDQHIGRIMLHPQTPKGAPWFWTITARVPQYPHDR
Ga0181523_106879391	3300014165	Bog	MLILKRASKSRPGGQWSDDDYDVLDGDRHIWRILWTYAAPED
Ga0181526_103781603	3300014200	Bog	MLLLKRASNSRSSGQRSDDDYDVFDGDQHIGRIMLNPQAPQGQPWFWTTTARVPQSPHDRGNA
Ga0182021_116771753	3300014502	Fen	VESTTLILRSASKSRPSGEWSADDYDVFDGEQRIGRIMRTNMALHERSWVWTI
Ga0182021_123361252	3300014502	Fen	MLILKRASVSRPSGQWDANDFDVFEAGRHIGRIMWTHAAPADRKWLWTITARVP
Ga0181536_100156281	3300014638	Bog	MLILKRASKNRPGGPWSVDDYDVFDGERHIGRILWTYAANRDTPWFWTITARVPQYPHDRGYAAT
Ga0181536_103082902	3300014638	Bog	MLILKRASNSRPSGEWADDYYDVFDGEERIGRIMLHPRAPQGQPWFWTITARVP
Ga0120104_11119431	3300014829	Permafrost	MLILKPTSKSFPSAHGSNGDYFVFDGDQHIGRILWTDAAPADRRWFWTITARAAQRP*
Ga0182030_108066771	3300014838	Bog	MLTLKRASKSRLSGEWSDDDYDVFDGKQHIGRIMWTHAAPADRRWFWTITARVPQSPY
Ga0187822_103038051	3300017994	Freshwater Sediment	MLILKRANVSRTGGPWDDNDYDVFDGAKKIGRILWTHAAPKDARWFWSITVRVPQYAHDRGYSA
Ga0187788_100285865	3300018032	Tropical Peatland	MHTLLLRRASKSRQSGSWSDDDYDVFDGGQCIGRILWTYASPADRRWFW
Ga0187887_108850811	3300018043	Peatland	MLLLICASKSRPSGEWSDDDYDVFDGDRHIGRILWTHAAPEDRRWFWTITARVPQYPDDR
Ga0187859_100819074	3300018047	Peatland	LKRASKRRPDGQWSIDDYDVFDEDRHIGRILWTYAAPEDRRWLWTIIARLDTAT
Ga0208850_10238951	3300025457	Arctic Peat Soil	MLTLKRASKSGPSGEWSDDDYDVFDGDHHIGRIMWTHAAPQDR
Ga0208850_10256183	3300025457	Arctic Peat Soil	MLLLKRASKSRPTGQWSDDDYDVFDADRHIGRIMWTHAVPADRRSTPCREHSQ
Ga0208079_10219922	3300025481	Arctic Peat Soil	MLLLKRASKSRPSGEWSDDDYDVLDGDRHVGRILWTHAAPEDRRWFWTITARVPQ
Ga0207928_11053511	3300025494	Arctic Peat Soil	MLILKRASKHRPGGQWSDDDYDVFEGERHIGRIMWTHAAPADRRST
Ga0208356_10646941	3300025504	Arctic Peat Soil	MLLLNRGSKSRLSGEWSDDDYDVFDGDRYIGRIMWTHAAPADRKWFWTITARVPQYPHDR
Ga0208714_11150911	3300025527	Arctic Peat Soil	MLTLKRASKSRPTGQWSDDDYDVFDGDRHIGRIMWTHAAPADRRWFWTITARVPQYPHDR
Ga0207927_11228851	3300025579	Arctic Peat Soil	MLVLKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAAPEDR
Ga0207927_11374741	3300025579	Arctic Peat Soil	MLILKRAFKSRPSGQWSDDDYEVFASNRLIGRIMWTHATPQDLRWFWTITARVPQYPHDR
Ga0208355_10441052	3300025581	Arctic Peat Soil	MLTLKRASKSRPGGTWSDDDYDVFDGDRHIGHILWTHAAPADRRWFWTITARVPQYPHDR
Ga0209386_11028912	3300025582	Arctic Peat Soil	MLTLKRASKSRPSGQWSDDDYDVFDGGQHIGRIVLRYAAPEYRQR
Ga0207930_10299421	3300025604	Arctic Peat Soil	MLTLKRASKHRPGGPWSDDDYDVFDGERHVGRIMWTHAAPEDRRWFWTITARVPQQPHDR
Ga0207930_10488063	3300025604	Arctic Peat Soil	MLTLKRASKSRPSGEWSDDDYDVFDGEQRIGRIMWTHAASRDKPWFW
Ga0207930_10597271	3300025604	Arctic Peat Soil	SMLLLKRASKSRPSGEWSDDDYDVLDGDRHVGRILWTHAAPEDRRWFWTITARVPQ
Ga0207926_10611274	3300025619	Arctic Peat Soil	MLILKSASKSRPSGQWSDNDYDVCDGASHIGRIMWTHAAPEDRRWF
Ga0207926_10906421	3300025619	Arctic Peat Soil	MLILKRASKSRPDGTWSDDDYDVFDGERLVGRIMWTHAAPADRRWFWTITARVP
Ga0208219_10225953	3300025625	Arctic Peat Soil	MLTLKRASKSRPSGECSADDYGVFDGDQQIGRIMWTHAAPEGRERNAHTAN
Ga0208219_11510182	3300025625	Arctic Peat Soil	MLLLKRASKSRPSGQWSDDDYDVFDGEHHVGRIMLHPQAPEGAPWFWPITARVPQYPH
Ga0209385_100397711	3300025650	Arctic Peat Soil	MLTLKHASKSRPNGQWSHDDYDVLDGDQHIGRIMWTHEASRDTPWFWTITARVPQSTHDRGLRGEP
Ga0209385_11937891	3300025650	Arctic Peat Soil	MLVLKRASKSRPTGEWSDDDYDVFDGDRHIGRIMWTHAGPADRQRNAHTAS
Ga0208849_11454601	3300025664	Arctic Peat Soil	MLNLRQANKSRPSGQWKADDYDAFDGDRHIGRIMWTHAAPADR
Ga0209638_10423355	3300025725	Arctic Peat Soil	MLTLKHASKSRPNGQWSHDDYDVLDGDQHIGRIMWTHEASRDTPWFWTITARVPQSTHDR
Ga0209538_11885831	3300025846	Arctic Peat Soil	MLILKSVSKSRPGGQWSDDDYDVCDGDRHIGRVMWTHAAPEDHRWF
Ga0209124_102028152	3300025852	Arctic Peat Soil	MLTLKRASKSRPSGQWSDDDYDVFDGGQHIGRIVWRDAAPEYRQRTAHTAS
Ga0209176_100884672	3300025854	Arctic Peat Soil	MLTLKRASKSRPSGQWSDDDYDVFDGGQHIGRIVWRYAAPEYRQRTAQTAS
Ga0209176_101077481	3300025854	Arctic Peat Soil	VQELARINDAMLILKLASKSRPSGQWAANDVDVFAGESHIGRIMWMHAAPADCKWFWTITARVPQQQHDRGYAA
Ga0209584_100854851	3300025878	Arctic Peat Soil	MLILKRPSKSRRSGQWSDDDYDVFDGDRHIGRIMWTHAAPADRRWFWTITARVPQSA
Ga0209584_101851282	3300025878	Arctic Peat Soil	MLTLKRASKYRPSGEWSDDDYDVFDGERHTGRIMWTHAAPADRRWFW
Ga0209840_11077321	3300026223	Soil	MLVLKRTSKSRPSGQWSDDDYGVFDGERHVGRIMWTHAAPEDRRW
Ga0209881_11616271	3300026273	Soil	MLILKRASKSRPSGKWSDDDYGVFDGDQYSGRIMWTHAAPEDRRWFWTITARVPQTP
Ga0209448_100603753	3300027783	Bog Forest Soil	MLILKRASKSRPSGTWSDDDYDVFDGDQHIGCIMWMHAAPEARRSFWTIAARVPQSTADRGYAASLD
Ga0209517_102957972	3300027854	Peatlands Soil	MLTLKRASKSQPSGRWSDDDYDVFDRDQHIGRIMWTHAAPEDRRWFWTITACTGQN
Ga0209517_103928861	3300027854	Peatlands Soil	MLTLKRASKSRPSGQWSDDHYDVFDGDQHIGLIMWTHAASRDTHWF
Ga0316363_103156271	3300030659	Peatlands Soil	MLTLKRATKSRPSGTWSDDDYEVFDGDQHIGRIMWTHAALAGRRWFWTVTARVPQ
Ga0307429_10161592	3300031368	Salt Marsh	MTALRLIRASKSRPSGTWPDDDYDVFDGEQHIDRIVWSYAAPLVL
Ga0307429_10530142	3300031368	Salt Marsh	MLRLIRASKSRPSGTWSDEDYDVFEGDQHIGQIIWSYAAPRERRWVWSITRDMLAT
Ga0307429_10762103	3300031368	Salt Marsh	MSMLRLIRAPKSRPSGTWSDDDYDVFDGEQHIGRIVWSYAALRERPWVWSIR
Ga0311301_118414712	3300032160	Peatlands Soil	MLILKRASKSQLRGEWSEDDYDVFDGDQHTGRIMLHPQAPEGAPWFWTITAQVTPRRSLWRKYE
Ga0311301_129002681	3300032160	Peatlands Soil	MLTLKRASKSRPSGQWSDDDYDVFDADRHIGRILWTYAAPEDRRWFWTI
Ga0335082_112066042	3300032782	Soil	MLILKQANKSRSGGPWDKNDYDAFDGERHIGRIMWTHAASRDTPWFWTITARVPQYPHDRGYA
Ga0316628_1000988731	3300033513	Soil	MLILKRASKSRSSGEWSDDDYDVFDSDRHIGRIMLHPQATTGEPRSWTITAAVPA
Ga0316628_1015913242	3300033513	Soil	MLTLKHASKSRPGGPWDDGDYDVFDGDRHVGRILWTHAAPEDRRWFWTITARAEYDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078011

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences