Basic Information | |
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IMG/M Taxon OID | 3300033759 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128997 | Gp0330726 | Ga0314869 |
Sample Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_B |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 169462917 |
Sequencing Scaffolds | 28 |
Novel Protein Genes | 30 |
Associated Families | 28 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2 |
Not Available | 7 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 3 |
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12 | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 2 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 3 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Tropical Peatland Microbial Communities From Different Locations |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | tropical biome → peatland → peat soil |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | Peru: Loreto | |||||||
Coordinates | Lat. (o) | -4.5438 | Long. (o) | -74.6258 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002531 | Metagenome / Metatranscriptome | 551 | Y |
F003042 | Metagenome / Metatranscriptome | 511 | Y |
F005549 | Metagenome / Metatranscriptome | 397 | Y |
F008449 | Metagenome | 333 | N |
F009996 | Metagenome / Metatranscriptome | 310 | Y |
F012904 | Metagenome / Metatranscriptome | 276 | Y |
F013119 | Metagenome / Metatranscriptome | 274 | Y |
F014210 | Metagenome / Metatranscriptome | 265 | Y |
F014308 | Metagenome / Metatranscriptome | 264 | Y |
F020248 | Metagenome / Metatranscriptome | 225 | Y |
F020332 | Metagenome | 224 | Y |
F023020 | Metagenome / Metatranscriptome | 211 | Y |
F025454 | Metagenome / Metatranscriptome | 201 | Y |
F026299 | Metagenome / Metatranscriptome | 198 | Y |
F031960 | Metagenome / Metatranscriptome | 181 | Y |
F033098 | Metagenome / Metatranscriptome | 178 | Y |
F034688 | Metagenome / Metatranscriptome | 174 | Y |
F048543 | Metagenome / Metatranscriptome | 148 | Y |
F057478 | Metagenome | 136 | Y |
F057709 | Metagenome | 136 | Y |
F059078 | Metagenome / Metatranscriptome | 134 | Y |
F063546 | Metagenome | 129 | Y |
F063980 | Metagenome / Metatranscriptome | 129 | Y |
F065625 | Metagenome / Metatranscriptome | 127 | Y |
F075965 | Metagenome / Metatranscriptome | 118 | Y |
F084287 | Metagenome / Metatranscriptome | 112 | Y |
F084640 | Metagenome / Metatranscriptome | 112 | Y |
F101786 | Metagenome | 102 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0314869_000086 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1611 | Open in IMG/M |
Ga0314869_001140 | Not Available | 965 | Open in IMG/M |
Ga0314869_001838 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 875 | Open in IMG/M |
Ga0314869_001880 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12 | 872 | Open in IMG/M |
Ga0314869_002910 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 791 | Open in IMG/M |
Ga0314869_003113 | Not Available | 779 | Open in IMG/M |
Ga0314869_003531 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 758 | Open in IMG/M |
Ga0314869_004734 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 708 | Open in IMG/M |
Ga0314869_004800 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 706 | Open in IMG/M |
Ga0314869_004985 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 700 | Open in IMG/M |
Ga0314869_005008 | All Organisms → cellular organisms → Bacteria | 699 | Open in IMG/M |
Ga0314869_005923 | Not Available | 674 | Open in IMG/M |
Ga0314869_006121 | Not Available | 669 | Open in IMG/M |
Ga0314869_007720 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 634 | Open in IMG/M |
Ga0314869_007872 | Not Available | 631 | Open in IMG/M |
Ga0314869_012448 | Not Available | 568 | Open in IMG/M |
Ga0314869_012561 | Not Available | 567 | Open in IMG/M |
Ga0314869_014006 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 553 | Open in IMG/M |
Ga0314869_014218 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 551 | Open in IMG/M |
Ga0314869_014599 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 548 | Open in IMG/M |
Ga0314869_015013 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii | 544 | Open in IMG/M |
Ga0314869_016194 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 535 | Open in IMG/M |
Ga0314869_018228 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii | 520 | Open in IMG/M |
Ga0314869_018534 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 518 | Open in IMG/M |
Ga0314869_018689 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 517 | Open in IMG/M |
Ga0314869_020296 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 507 | Open in IMG/M |
Ga0314869_020523 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium | 506 | Open in IMG/M |
Ga0314869_021051 | All Organisms → cellular organisms → Bacteria | 503 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0314869_000086 | Ga0314869_000086_1_156 | F014308 | SIGIQIIMPKTGTSPKSTPAQQANEREAATPPVTRQAPPPPGMGKFVDKTA |
Ga0314869_001140 | Ga0314869_001140_570_887 | F002531 | MASSAIASEGTLRIHRSIAGTSAPFRVTYQAYQDGDEPSPAAERAFYHLQDVREFLNVLGIGAQYVREALRELTAGRSAFLTNIALTEKAIKNAGFNSLLAAARG |
Ga0314869_001838 | Ga0314869_001838_1_522 | F009996 | QIGRVNKNKVPANAITLQTVIATALAILVFFILGAGGSDPYKVFYALYAGVTIVWCISTALLFLDIFFAKRADPERFERERRAPLGWLYACGAAGFIVNILAVLFIFVGSWYPTGFPKLWVWNMWMTGITVVSVAAAIVIYLISQRTRHGETDVEFIAEGAVAQEIAEDSPPA |
Ga0314869_001880 | Ga0314869_001880_695_862 | F020332 | VGSGVHATVAEAVDAFVRFQPEEHQPDPERREAYDDAYRRYREVYFALKPVFAAG |
Ga0314869_002601 | Ga0314869_002601_414_809 | F084287 | FNLAAPAFEKDPTFAQSLGAAAEKVSELTPAVKLYNEGEYETAIPILWRIFQADRENQDARSYLLRCYYNQGIAQLQNGLYGKAADSFKEVIAIDPADADATRNQKFAQHYAKGDLDLMGRIYVRHVQQRP |
Ga0314869_002910 | Ga0314869_002910_585_791 | F084640 | IGWLWRDVQHLSLAHDVSDGGLAHALAEASTFSGQRFEAPGDAPRGSVVLSAAETPSWPDLRELGTIA |
Ga0314869_003113 | Ga0314869_003113_188_592 | F048543 | MANEKQSKSDHAQNYPASILRNFALLALPWVSFQSDMLKILKKGIKDTSHVKPLQKLTLLELHGLMMILDPSRTWRSRVDGDFEKKIEETYNEIFPKILDSSTHFIEAQDTVLEHMHNALMTWKNGNKAKGHSK |
Ga0314869_003531 | Ga0314869_003531_468_737 | F020248 | LFVALCAATAAHAFTIENQGGPGGGQGFKDSDSTSTVPDRHVPVSPFNSNNGQTTVKQGNTTLQFGGQRSFSDRYNTDNIFNPYTREGR |
Ga0314869_004734 | Ga0314869_004734_176_706 | F003042 | MAAPANSKHSGPDRPTQLARRLSESLLRERLVPRFVDSYVVEHGRYGLQVHAALYRDLLSLIQREALLAISACALDFVTRPSLARGERNFQVLKRKEISAFRQRFLSALARQQQWNAGAALEFQSDLQMYEGILAKSAQERRRRKPFEVANHPFVDRCAFLLDSSFLENARLAASRA |
Ga0314869_004800 | Ga0314869_004800_531_704 | F057709 | MSEFALKVALAIFVAKLFDPFAALPALVAGYFCRSWWQVVISAAAVGIIVEMILAALQ |
Ga0314869_004985 | Ga0314869_004985_285_698 | F033098 | MAINTKSIRTKMLGLLAFIALVVGGVSVLYDLRAGGGLIRDEIVKRGRYVASNLAFNAKYGVLTEDKPLLTQFLEGAAAPGGVGERSDVVGALIRDGKGAVLAQTGKAIRDLPGALPAALEEREGATTDGESVILFRA |
Ga0314869_005008 | Ga0314869_005008_542_697 | F031960 | PPQTLIADPDAPEADSYKNKDYEFYSLKTFITLTRKSHGTVVKFYDTCRVE |
Ga0314869_005923 | Ga0314869_005923_402_674 | F026299 | MARMFIVAWQGTPPPDKADWIRILREVLANETGSYRIVFDRAKRGWRFTLDWREGERARDEGLVANSPESVAYNIYASLAGGGKPVDAAWK |
Ga0314869_006121 | Ga0314869_006121_3_668 | F101786 | GRLLHSAGDAPAAIAELESLATTLPPGLLRARALYHHMYVLRLSGALERAIDYGEQAAVEASADPLLQAEVYQLLSRLSDNDVGRKLATARKALEAVAGLAFPDPDVLFYVRAAMVEAEFYAGLGIHLHRLDGVEPDSRLPFPPTRGASRGDDLVGRLLTFAGRIDEGLAVLRGFYERAAVASRSTLPATLGWMAEAQLLAGRFAAAAELTREAIDRAEEIG |
Ga0314869_007720 | Ga0314869_007720_16_270 | F065625 | MLVAAGSPPKAPASIDIWRAKHPDLHPHGVVLEGLRERYDERVLEWVPYFHRWLRGPSSEALETSLIAAGAFRAIGWRWVGVRR |
Ga0314869_007872 | Ga0314869_007872_46_279 | F063546 | MSDWTLGDIKARNMEIVALCEQESCHHLFVFNLDQLIEGVSAGYKLADFPPMACPACGAEPLAIRLSFADTPPDEDG |
Ga0314869_008769 | Ga0314869_008769_1_615 | F014210 | LFVRQTGLVCNQCHVTWTPTPDMTFTGVKFRLNGYRTPWVAEKIEAGEEGAMNGRRLLLGVTGYLSYHMRSNLFQQSKAASDPTLPEPDAGPVSSNPFSSLAWDYAGPIAENVGIWTEWYSTNFNPVTTGDASIGNQFGAVRNDEFDVRMAWNPGEGGNIITVFYNNQAQNAPFFGAFGSGAPAGGQGQFIHFGVGGWLRDRVAI |
Ga0314869_012448 | Ga0314869_012448_2_157 | F057478 | MQYLRSLVYTILFFATTLLFGFAVLVAAMLPLSLEQRYVIPRNWGRFLTWLA |
Ga0314869_012561 | Ga0314869_012561_290_565 | F034688 | IVSSFFVVVVAASLFLGAVMMIGTFHDQDSELRASGRTTRIARALHDGTLCHYVVIDNRTAQALEDRIGRCDENKPKPKPITVPTFRWGGG |
Ga0314869_014006 | Ga0314869_014006_249_413 | F025454 | MLEEAGLDRERARKLRRQILEGIILLCQWQLERMEASPAPPPSGGRRARKVTVD |
Ga0314869_014218 | Ga0314869_014218_197_343 | F063980 | VFALVLAYVLIMALKLQRLERDVDELAARAPADDVDEEEARRETASVG |
Ga0314869_014599 | Ga0314869_014599_216_548 | F013119 | MDIEQGAERRLSRQDLLKWAALAGGAGLVAGRTGVADAMRAFDVAESGRLQVMDWAGYGNDGGQAMFAQYVKQHPNNKPQFTYMTNESDALAKLHAGLKADLFRPYVGWTK |
Ga0314869_015013 | Ga0314869_015013_3_347 | F008449 | AYASKFQKFFALLKERGYKVPANITKCWAPQGTHVAGSNHYIGAACDIQTGWNRGPAFVYHMSDIVEQAGLYNGCSFHDCGHVEAVRGTHNKAPNLYAAMEKFKSEQSTANYQP |
Ga0314869_016194 | Ga0314869_016194_1_534 | F023020 | VDKDGTNNLPSVARSESATPLQEQLINLRVRHLEIKDGWFLYNDVKKLVAVEGGDFRLEINLSGTAERPFYVGALKWEEIELARRRDVPIPANVSAKFSLSRDGFSVEQAIVNAGRSHIDLRAQAKDLESPLWTYRYRAWLDLLDIRETFRTPEVPLGRIDLRGEGTIDPEGIKGKGV |
Ga0314869_018228 | Ga0314869_018228_28_519 | F008449 | ATNTEVAIHTEAGPTAAKAAPFASVRDANGNSTMVTVQTAYGFNITVNPAYASKFQKFFALLKERGYKVPANITKCWAPRGTHVAGSNHYIGAACDIQTGWNRGPEFVYHMSDIVEQAGLYNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTASYQP |
Ga0314869_018534 | Ga0314869_018534_226_333 | F012904 | VTREQQRDNLRTAAVLGSIALVFFLGIMLKYFLLK |
Ga0314869_018689 | Ga0314869_018689_1_204 | F059078 | VRCRIAGWKVAEVVVQHFPREAGQSIHRPFRMLGTIWKVLRYLFALRAEMHQAERLRRLVEGRRTAS |
Ga0314869_020296 | Ga0314869_020296_365_505 | F005549 | MKYLRKYTAIPAVKYSLIAIASLLWFVGFADQLPDVTQTAKYVGISL |
Ga0314869_020523 | Ga0314869_020523_160_327 | F014308 | MSDCSIGIQVIMPKTGTSPKSTPAQQANEREAATPPVTRQAPPPPGMGKFVDKTA |
Ga0314869_021051 | Ga0314869_021051_230_502 | F075965 | FLAQYCAGKNISAALCRDVKWWALGLAALLAVVVVWWILGKIAMAFDNRRSRRLHAKIADPETMKEHVWAGHDAHLPSSDQRARRDQRPR |
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