NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027959

3300027959: Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027959 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0103597 | Gp0115564 | Ga0209477
Sample NameActive sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size576023234
Sequencing Scaffolds38
Novel Protein Genes39
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage3
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Aeromicrobium → Aeromicrobium endophyticum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis pusilla1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Janibacter → Janibacter indicus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → Phycicoccus mangrovi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria
TypeEngineered
TaxonomyEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationAustria: Klosterneuburg
CoordinatesLat. (o)48.3Long. (o)16.2Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006745Metagenome365Y
F010914Metagenome / Metatranscriptome297Y
F011936Metagenome / Metatranscriptome285Y
F014281Metagenome / Metatranscriptome264Y
F016970Metagenome / Metatranscriptome243Y
F019846Metagenome227Y
F021570Metagenome / Metatranscriptome218Y
F025488Metagenome / Metatranscriptome201N
F032247Metagenome / Metatranscriptome180Y
F033805Metagenome / Metatranscriptome176Y
F037930Metagenome / Metatranscriptome167Y
F040068Metagenome / Metatranscriptome162N
F050360Metagenome / Metatranscriptome145Y
F051906Metagenome / Metatranscriptome143N
F054825Metagenome139Y
F054879Metagenome / Metatranscriptome139Y
F055725Metagenome / Metatranscriptome138Y
F059781Metagenome133Y
F059895Metagenome / Metatranscriptome133Y
F063111Metagenome / Metatranscriptome130Y
F069722Metagenome / Metatranscriptome123Y
F070896Metagenome122N
F078624Metagenome / Metatranscriptome116N
F079734Metagenome115Y
F085731Metagenome111Y
F095356Metagenome105Y
F097375Metagenome / Metatranscriptome104Y
F098716Metagenome103Y
F098921Metagenome / Metatranscriptome103N
F099163Metagenome / Metatranscriptome103N
F100051Metagenome / Metatranscriptome103Y
F101471Metagenome / Metatranscriptome102Y
F105181Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209477_1001544All Organisms → cellular organisms → Bacteria13924Open in IMG/M
Ga0209477_1002493All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae10618Open in IMG/M
Ga0209477_1010673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4206Open in IMG/M
Ga0209477_1020331All Organisms → Viruses → Predicted Viral2787Open in IMG/M
Ga0209477_1026646All Organisms → Viruses → Predicted Viral2347Open in IMG/M
Ga0209477_1027156All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae2320Open in IMG/M
Ga0209477_1034595All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1991Open in IMG/M
Ga0209477_1036597All Organisms → Viruses → Predicted Viral1919Open in IMG/M
Ga0209477_1041106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1785Open in IMG/M
Ga0209477_1045888All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage1664Open in IMG/M
Ga0209477_1051857Not Available1538Open in IMG/M
Ga0209477_1052329All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage1529Open in IMG/M
Ga0209477_1054719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1487Open in IMG/M
Ga0209477_1062033Not Available1374Open in IMG/M
Ga0209477_1078885All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1177Open in IMG/M
Ga0209477_1091822All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1067Open in IMG/M
Ga0209477_1092934All Organisms → cellular organisms → Bacteria1059Open in IMG/M
Ga0209477_1105069All Organisms → cellular organisms → Bacteria977Open in IMG/M
Ga0209477_1120259Not Available894Open in IMG/M
Ga0209477_1127017Not Available862Open in IMG/M
Ga0209477_1127198All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi862Open in IMG/M
Ga0209477_1128913Not Available854Open in IMG/M
Ga0209477_1129357All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales852Open in IMG/M
Ga0209477_1130493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Aeromicrobium → Aeromicrobium endophyticum847Open in IMG/M
Ga0209477_1133569All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi835Open in IMG/M
Ga0209477_1140006All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis pusilla809Open in IMG/M
Ga0209477_1151055All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage770Open in IMG/M
Ga0209477_1156575Not Available752Open in IMG/M
Ga0209477_1162850Not Available732Open in IMG/M
Ga0209477_1176827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Janibacter → Janibacter indicus693Open in IMG/M
Ga0209477_1178131All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria690Open in IMG/M
Ga0209477_1178314All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium689Open in IMG/M
Ga0209477_1185725All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp.671Open in IMG/M
Ga0209477_1197819Not Available643Open in IMG/M
Ga0209477_1235901All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi570Open in IMG/M
Ga0209477_1248647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → Phycicoccus mangrovi549Open in IMG/M
Ga0209477_1256226Not Available537Open in IMG/M
Ga0209477_1280333All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209477_1001544Ga0209477_100154414F006745RRRHHLGTRQAHMRTSAKARRTSSAVVLYVIVLIAFQVFLITVAVEAFQTDTESLAWATAAVSVTLFAAAAAFLRYLRP
Ga0209477_1002493Ga0209477_10024932F098921MSTPDPALTAALKVMLTDTCWRCSDGGGATCDPCLSELVAAAERDAEAATVMASLRGMFDPMTGRPAGGGW
Ga0209477_1010673Ga0209477_10106733F006745VRTTQRDTRASSAVAVYVIILVAFQVFLLTVAVEAFATDDEPLAWATAGVSVVLAAGSAVLLRYLRP
Ga0209477_1020331Ga0209477_10203313F100051MLERLICTVFGHRYVVERALNHGARKVGCTRCGKHWAMHDATRSFVPWDGEFEAMYAPGGILAEASGDVPHNAEVTGRPRATEDR
Ga0209477_1026646Ga0209477_10266462F059895MTGLDATIARALSGYNAGDVLSFDSLREAANAAQLTPRQLHGQILHAIHAGYITPLRAVVGGVEYDLTRPTEHGPGVHRLIRHYRRTSVPVVVRVAS
Ga0209477_1027156Ga0209477_10271562F040068MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQETPPIIREQMAAWPDPRPIGQPVFTPSPDYQYFLFNYFVLSVQSGSTTFDATASVGLNAPIASMDWYVDDVYVVSGLVSTVTMMGGVHTISVLITDDYGNQQTFSFEYEQGVDLGFNFITGEYFYFIDDVQFDFIG
Ga0209477_1034595Ga0209477_10345952F059781MNPAERVRIITETARAVLDGRLDAVAGATTLTLQEEQIAPHLRSDRIDVTQAEADTVALTLRRLGEQISDLPPTRHDPEALMEMARILGALAQTLR
Ga0209477_1036597Ga0209477_10365974F055725MAFFNGCGIDLKTITELAAQGLSLNSMSKVTGHSKNGIKAALERNNIPYTMGIRERFVTVNGVLTCLGDACNAQGFSREAMYAWRVKRGLNEQDGFDAYVIYKASKRTIDRPILTFKNATVLYKKERYTLDAISDKLKLNKQRFEVFMRQNRYAQNEFDRYCYMRGL
Ga0209477_1036885Ga0209477_10368852F025488MAYVSRGFIPQTSLASNLGFTRPMYIPAGNGKATALYDIVKVSTSGSTVDTAGVPAGLMGCVRVDDKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSIDTVTGTSGMQISSATLAGSPGMFRLQQRSFAVDNAAIAGTNTKWLVTFNTHQFKATA
Ga0209477_1041106Ga0209477_10411063F006745MRVSRSTKRASSAVLVYVIVLVSLQIFLVTIAVEAFTVDDDGLAWATAGVSVAIAASAVAFLRWLRP
Ga0209477_1045888Ga0209477_10458881F033805MKNLKLELFNFKQSLDFDRSDIAYIVEGHMNACNDLSEKTIIFSLNEKLKSFTYDDDVNTLLEGLNDDMSKYQLLYELKNLYSVLNSKNQ
Ga0209477_1051857Ga0209477_10518571F054879MDLVASDTRVFLFHTADASSDPGGAMDRVNNWLGKDRTDSQYPHLRVKDITLTPDGKGGVFTLVVVSLGKFATE
Ga0209477_1052329Ga0209477_10523291F105181MSKKKKEFDRISDEFDMIQNDGSEFDISHHLANIDDLPNLGVIEVYDYDSDLTVSSQKALEVLESLVDLYLGDFPELKKNPYIRNKIREDAMVYAETHFLQKMTRRNFLTQLRQVDNGENSARMHEVLNQTITQVRENSKFASSQRNDLEKF
Ga0209477_1054719Ga0209477_10547192F021570MKQAFERIGARFRHASRNVASFYAKRLILVEQLEKNGLNKEIRRLR
Ga0209477_1062033Ga0209477_10620332F050360MTNSYDNWFQDMLRDCENGLFGGDVHDESKDDVSDWTDVKSYPPEFSRMVWAAVPNVIICAHQTFLLYLDSDGQWRDNTGCLFSRRVNFWQYADVPFFEGSC
Ga0209477_1078885Ga0209477_10788852F069722MRVRLTAELDPKAKRERPALKKGAAQEKALGHGSGAALQEG
Ga0209477_1091822Ga0209477_10918221F101471HKMKTLIATATLTIMFLSAGAFAGNDIKMASGAKPQVSNVTVILKNGQWPVKGQTSFDACSVRRCLDA
Ga0209477_1092934Ga0209477_10929341F032247MTVDDAIFNLETYGRHIGNRFIAINHDRHDALLLQNAVIVLESAGMIERDTVEAWAQCNVRIINKPVPKVDYTTGL
Ga0209477_1105069Ga0209477_11050692F099163VTLYTSSKPGTTLTLTPGAWRTVAVATIPAGAQVHSMLYANVSGRAKAGASVVQLDVRALRDGGTDETALQTYTAAVKPDGSWRCRITATWFGGDPGSSMHWQIMPTLNISTATVSGTRYAKGMTN
Ga0209477_1120259Ga0209477_11202592F011936VSVEASRIYCEKVRGKELNELLHETRLQKLEYGHDMLSRDYSRLNDAIVKISESLVQLVVIQEQNKSIMQCIEHQSSTIDSLDRRLDAIEVNMPALLELRTWVLTGLGLIVSAFFIALIALVIK
Ga0209477_1127017Ga0209477_11270171F078624MKLCIHVRPRDDGQGWAIDVYDGRRAWAKTHLGESPLNKAEAHRVAHKLRDPKFYTARTKRAVNSLTIERGPKVVPHE
Ga0209477_1127198Ga0209477_11271982F079734MTVRVYLQSGRLLPGPPQPGDLPAERVFIHASDVPEFWVETESESVPTVGRVVSFATTRPLDIGFGRIVGTVERKLNKSSR
Ga0209477_1128913Ga0209477_11289132F011936MDLELSEQQHETRLQSLENGHNMLVRDYTRLNDAIVKISESLTAFVVLQEQNKTLIQQSEKQTIIIEQTNRRVNAIEGQIPQLLETRSWVLTGLGLIVSAFFIALITLVVK
Ga0209477_1129357Ga0209477_11293572F051906MTPHAAFIRRAGARHYRCATCLERVAPGQRVPHLNRATVRAAEYGTTTPTHDLGDDE
Ga0209477_1130493Ga0209477_11304931F098921TAALKVMLTDACWRCSDGDGATCDPCLSELVAKAERDAEARTVMASLRGMFDPMTGRPAGGAW
Ga0209477_1133569Ga0209477_11335692F097375MTDAVSIPNPLCEIGRTHPRDKHRMKPLDGHPGVWFCSKHDLYATVLAEAEADAIERGAAYVMHDGTEGVAGRTGDERPGGIVFYYRAGH
Ga0209477_1140006Ga0209477_11400063F070896MEFEFATARNMRLGALVMARGEFCVEVIEPGECVAFVLLRGCLQITRQRAGEPASYCLHATPRAPLVIINPGTYTIVAERSAVGLRGVRRRT
Ga0209477_1151055Ga0209477_11510551F016970TDEDRMSKVLNELAIYDWVPEIKLFVYNLTKSPEQRSNLLSGGKSEVVYTIVEQVEDGHLAYIKDSWFLLTDDSIEKTLLENHVKDDNRMKTLRSLQTAMQFATINESRIDFRISEYLTIGLSVNDSTIFINEDELSEDTSLENLFSSPIVPIVNRNFYPLLVEVSNNIDSFVELDVVKRVSNLISPTLEVFAFNYKKNTFIYRCDERYGNSFFKYESALELVNEVRNELNYDLTFFYDNKLSKEIVAKKQLEDKE
Ga0209477_1156575Ga0209477_11565752F085731MNQQLLPMAVRAQVAYSEVRARARRAWADRHEEDGVDEAVTKMIWLAVGIVVAIAATAFFMAKFNQAKDNVPDPIAP
Ga0209477_1162850Ga0209477_11628501F063111MLATSVAVVTMMLDAVAGSAPSRLSARGTTAPETPLTAQLPIMARQTATPSHRAWADS
Ga0209477_1176827Ga0209477_11768271F054825MTAQQSCTRDLDLLFVDKDARSAVKPGPGVVHDRVGLGIVVMDERGRDFTFTDTGHALEARAGQRARLSPALARDLAAALERFADYAEGLTTYVPTDRADP
Ga0209477_1178131Ga0209477_11781311F019846EEDRDPLPRVEPGKSFGGTMELAVFGRTRNEDDRRRELARRRLTTWGAAGGPWDVKDISQTGFRLVAPMSAASAVTLNTLAAIRPYGHAFWTLGIVRRMRRLTSDRAEIGLQVIANTLIGVELCEQKRGGDSTYSVEGENSTLDGRAFAGLFLALRKREGETAVQSLIVPAAEYAPARRFRLNTPRQTVPIRFGRLIEQQPDWVWAAVEPLDLGNGDALSPVTVAPGFG
Ga0209477_1178314Ga0209477_11783142F014281VEKDMKIYLLVMLIGALLTAIHFTSAPDQRSETLPQ
Ga0209477_1185725Ga0209477_11857253F011936TRKIRGVDLLEQLHETRLQKLENGHDMLSRDYSRLNDAIVKISESLMALVVIQEQNKSIMQCMEHQSTTIEKLDARIDAIELQMPQLIESRKWLMIGLGLIVSAIIVSLIALVIK
Ga0209477_1197819Ga0209477_11978191F095356LLKHKPDLIPIILGFQNHFEIAIDGESIALQRMTAPPQARQFKTLAAAYSYLRKFLDYRGDVFIRLIDPTTGTGDA
Ga0209477_1235901Ga0209477_12359012F037930MTLITDRGKPKRTADSMRVERDYRNVITLFLAGQMPNFTHQRHVHVANILKHIPYGRELMHLGLQTMTYRQFVVGKYSAEITDRYWDQLDGTLPDPKEFADLPGG
Ga0209477_1248647Ga0209477_12486471F054825MTAQRPRTRDLDLWLVDKDAHGAVMPGPGVVYDRAGLGILVMDERGRDFTFTDTGHDLEVWAGQRVRLSPALARDLAAALERFADYAEDLTAYEATDRAEP
Ga0209477_1256226Ga0209477_12562261F098716TQESKELRRHLLSHNGPDVVDRMQQSGMADPVGMIIEMTDDIGKQLTYAALEKQGMPKHEIPELIASYSKNAIPTFKSVVSFETALKILPLTSESAEQNLKGPRRPGTHWIVIVGGGGNSYAQVPVNVG
Ga0209477_1280333Ga0209477_12803332F010914MIYKILVEQDGKFVATGETVECEFEETQAVIDELQLEHGCCCALEAVSE

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