NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F063111

Metagenome / Metatranscriptome Family F063111

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F063111
Family Type Metagenome / Metatranscriptome
Number of Sequences 130
Average Sequence Length 45 residues
Representative Sequence MLTTSVAVVRKMLEAVAGSKPKRFSVSGTIAPEMPLAMQ
Number of Associated Samples 119
Number of Associated Scaffolds 130

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 92.31 %
% of genes near scaffold ends (potentially truncated) 99.23 %
% of genes from short scaffolds (< 2000 bps) 89.23 %
Associated GOLD sequencing projects 111
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (73.077 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(6.923 % of family members)
Environment Ontology (ENVO) Unclassified
(34.615 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(38.462 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 23.88%    β-sheet: 0.00%    Coil/Unstructured: 76.12%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 130 Family Scaffolds
PF00571CBS 11.54
PF13561adh_short_C2 5.38
PF01435Peptidase_M48 4.62
PF01026TatD_DNase 4.62
PF08239SH3_3 3.85
PF00266Aminotran_5 3.85
PF12697Abhydrolase_6 3.08
PF00027cNMP_binding 2.31
PF06347SH3_4 2.31
PF07995GSDH 2.31
PF02776TPP_enzyme_N 1.54
PF14255Cys_rich_CPXG 1.54
PF01264Chorismate_synt 1.54
PF00106adh_short 1.54
PF02729OTCace_N 1.54
PF00072Response_reg 1.54
PF12706Lactamase_B_2 0.77
PF03235DUF262 0.77
PF03965Penicillinase_R 0.77
PF01171ATP_bind_3 0.77
PF13499EF-hand_7 0.77
PF00933Glyco_hydro_3 0.77
PF02687FtsX 0.77
PF13404HTH_AsnC-type 0.77
PF08240ADH_N 0.77
PF07730HisKA_3 0.77
PF01797Y1_Tnp 0.77
PF08335GlnD_UR_UTase 0.77
PF13524Glyco_trans_1_2 0.77
PF01814Hemerythrin 0.77
PF07885Ion_trans_2 0.77
PF00211Guanylate_cyc 0.77
PF00486Trans_reg_C 0.77
PF13545HTH_Crp_2 0.77
PF00440TetR_N 0.77
PF13610DDE_Tnp_IS240 0.77
PF12221HflK_N 0.77
PF00534Glycos_transf_1 0.77
PF00775Dioxygenase_C 0.77
PF01195Pept_tRNA_hydro 0.77
PF00196GerE 0.77
PF04993TfoX_N 0.77
PF00873ACR_tran 0.77
PF00582Usp 0.77
PF00188CAP 0.77
PF11303DUF3105 0.77

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 130 Family Scaffolds
COG2133Glucose/arabinose dehydrogenase, beta-propeller foldCarbohydrate transport and metabolism [G] 2.31
COG0082Chorismate synthaseAmino acid transport and metabolism [E] 1.54
COG4585Signal transduction histidine kinase ComPSignal transduction mechanisms [T] 0.77
COG0037tRNA(Ile)-lysidine synthase TilS/MesJTranslation, ribosomal structure and biogenesis [J] 0.77
COG4564Signal transduction histidine kinaseSignal transduction mechanisms [T] 0.77
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 0.77
COG3850Signal transduction histidine kinase NarQ, nitrate/nitrite-specificSignal transduction mechanisms [T] 0.77
COG3682Transcriptional regulator, CopY/TcrY familyTranscription [K] 0.77
COG3485Protocatechuate 3,4-dioxygenase beta subunitSecondary metabolites biosynthesis, transport and catabolism [Q] 0.77
COG3070Transcriptional regulator of competence genes, TfoX/Sxy familyTranscription [K] 0.77
COG2844UTP:GlnB (protein PII) uridylyltransferaseSignal transduction mechanisms [T] 0.77
COG2340Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domainCell cycle control, cell division, chromosome partitioning [D] 0.77
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.77
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 0.77
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.77
COG1606ATP-utilizing enzyme, PP-loop superfamilyGeneral function prediction only [R] 0.77
COG1479DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domainsDefense mechanisms [V] 0.77
COG1472Periplasmic beta-glucosidase and related glycosidasesCarbohydrate transport and metabolism [G] 0.77
COG06037-cyano-7-deazaguanine synthase (queuosine biosynthesis)Translation, ribosomal structure and biogenesis [J] 0.77
COG0519GMP synthase, PP-ATPase domain/subunitNucleotide transport and metabolism [F] 0.77
COG0482tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domainTranslation, ribosomal structure and biogenesis [J] 0.77
COG0301Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)Translation, ribosomal structure and biogenesis [J] 0.77
COG0193Peptidyl-tRNA hydrolaseTranslation, ribosomal structure and biogenesis [J] 0.77


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms73.85 %
UnclassifiedrootN/A26.15 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2199352024|deeps__Contig_162538All Organisms → cellular organisms → Bacteria → Proteobacteria1792Open in IMG/M
3300000956|JGI10216J12902_116979076Not Available653Open in IMG/M
3300002916|JGI25389J43894_1040963Not Available796Open in IMG/M
3300004016|Ga0058689_10096570All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300004019|Ga0055439_10178481All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales671Open in IMG/M
3300004114|Ga0062593_103416299All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300004183|Ga0066403_1051245All Organisms → cellular organisms → Bacteria692Open in IMG/M
3300004463|Ga0063356_101888270Not Available900Open in IMG/M
3300004480|Ga0062592_101579233All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300005168|Ga0066809_10070936All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Arenimonas → unclassified Arenimonas → Arenimonas sp.812Open in IMG/M
3300005327|Ga0070658_10190192All Organisms → cellular organisms → Bacteria → Proteobacteria1730Open in IMG/M
3300005438|Ga0070701_10193225All Organisms → cellular organisms → Bacteria → Proteobacteria1199Open in IMG/M
3300005440|Ga0070705_100685293All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium803Open in IMG/M
3300005456|Ga0070678_100650197All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria946Open in IMG/M
3300005459|Ga0068867_100294261All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva1336Open in IMG/M
3300005535|Ga0070684_100713436All Organisms → cellular organisms → Bacteria → Proteobacteria935Open in IMG/M
3300005535|Ga0070684_101216692All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria708Open in IMG/M
3300005539|Ga0068853_101900031All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300005552|Ga0066701_10973555All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium502Open in IMG/M
3300005555|Ga0066692_10199557All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1251Open in IMG/M
3300005556|Ga0066707_10821133Not Available574Open in IMG/M
3300005558|Ga0066698_10645795Not Available706Open in IMG/M
3300005598|Ga0066706_10878402Not Available700Open in IMG/M
3300005616|Ga0068852_100014496All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae6071Open in IMG/M
3300005617|Ga0068859_102393931All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300005841|Ga0068863_100403671All Organisms → cellular organisms → Bacteria1337Open in IMG/M
3300005985|Ga0081539_10421073All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium554Open in IMG/M
3300006163|Ga0070715_10645112Not Available626Open in IMG/M
3300006186|Ga0075369_10597662All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300006865|Ga0073934_10009357All Organisms → cellular organisms → Bacteria12595Open in IMG/M
3300006871|Ga0075434_101302922All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium737Open in IMG/M
3300006871|Ga0075434_101714400Not Available636Open in IMG/M
3300006903|Ga0075426_11471270All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium518Open in IMG/M
3300006904|Ga0075424_100852345All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria972Open in IMG/M
3300006918|Ga0079216_11155260All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300007004|Ga0079218_10751125All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20926Open in IMG/M
3300009012|Ga0066710_102968282Not Available662Open in IMG/M
3300009095|Ga0079224_103140655All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia658Open in IMG/M
3300010401|Ga0134121_12959957All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300011435|Ga0137426_1025301All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-41466Open in IMG/M
3300014875|Ga0180083_1066225All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium762Open in IMG/M
3300014879|Ga0180062_1001545All Organisms → cellular organisms → Bacteria → Proteobacteria4601Open in IMG/M
3300015256|Ga0180073_1015847All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Curculionoidea → Curculionidae → Entiminae → Celeuthetini → Syntrophus1335Open in IMG/M
3300018027|Ga0184605_10392277Not Available621Open in IMG/M
3300018053|Ga0184626_10265149Not Available718Open in IMG/M
3300018422|Ga0190265_11813177Not Available718Open in IMG/M
3300018432|Ga0190275_13299239All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium522Open in IMG/M
3300018433|Ga0066667_11056451Not Available702Open in IMG/M
3300018476|Ga0190274_13054270All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300018476|Ga0190274_13846467All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300018481|Ga0190271_11790199Not Available726Open in IMG/M
3300018920|Ga0190273_10886927All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300020067|Ga0180109_1005279All Organisms → cellular organisms → Bacteria1323Open in IMG/M
3300020147|Ga0196976_1084823Not Available682Open in IMG/M
3300020192|Ga0163147_10182324All Organisms → cellular organisms → Bacteria1242Open in IMG/M
3300020202|Ga0196964_10446274Not Available628Open in IMG/M
3300020202|Ga0196964_10662783All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300021559|Ga0210409_10365608Not Available1295Open in IMG/M
3300021953|Ga0213880_10115838Not Available711Open in IMG/M
3300022209|Ga0224497_10201681All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300024056|Ga0124853_1338153All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1825Open in IMG/M
3300024330|Ga0137417_1221224All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1513Open in IMG/M
3300025310|Ga0209172_10571798Not Available509Open in IMG/M
3300025321|Ga0207656_10225567All Organisms → cellular organisms → Bacteria → Proteobacteria912Open in IMG/M
3300025321|Ga0207656_10299362All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria796Open in IMG/M
3300025708|Ga0209201_1096209All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin4311077Open in IMG/M
3300025793|Ga0210065_1018476All Organisms → cellular organisms → Bacteria1303Open in IMG/M
3300025907|Ga0207645_10870908Not Available612Open in IMG/M
3300025909|Ga0207705_10055131All Organisms → cellular organisms → Bacteria → Proteobacteria2866Open in IMG/M
3300025909|Ga0207705_10607612All Organisms → cellular organisms → Bacteria → Proteobacteria850Open in IMG/M
3300025917|Ga0207660_10243836All Organisms → cellular organisms → Bacteria → Proteobacteria1416Open in IMG/M
3300025919|Ga0207657_10981166Not Available649Open in IMG/M
3300025921|Ga0207652_10255218All Organisms → cellular organisms → Bacteria → Proteobacteria1581Open in IMG/M
3300025936|Ga0207670_10632664All Organisms → cellular organisms → Bacteria881Open in IMG/M
3300025938|Ga0207704_10271463All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales1284Open in IMG/M
3300025938|Ga0207704_11538379All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300025938|Ga0207704_11812155Not Available525Open in IMG/M
3300025940|Ga0207691_10323478All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300025944|Ga0207661_11661533All Organisms → cellular organisms → Bacteria → Proteobacteria584Open in IMG/M
3300025949|Ga0207667_10577859All Organisms → cellular organisms → Bacteria → Proteobacteria1135Open in IMG/M
3300025972|Ga0207668_10379571All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1189Open in IMG/M
3300025972|Ga0207668_11253552All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva667Open in IMG/M
3300026023|Ga0207677_11753099All Organisms → cellular organisms → Bacteria → Proteobacteria576Open in IMG/M
3300026088|Ga0207641_10105593All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella koreensis2488Open in IMG/M
3300026118|Ga0207675_102439676All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium535Open in IMG/M
3300026121|Ga0207683_11859294All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae → Opitutus terrae PB90-1551Open in IMG/M
3300026142|Ga0207698_10530952Not Available1150Open in IMG/M
3300026142|Ga0207698_10647464All Organisms → cellular organisms → Bacteria → Proteobacteria1046Open in IMG/M
3300026309|Ga0209055_1199128All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300026319|Ga0209647_1161192All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales916Open in IMG/M
3300026326|Ga0209801_1013351All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria4180Open in IMG/M
3300026548|Ga0209161_10328137Not Available703Open in IMG/M
3300027181|Ga0208997_1002320Not Available2181Open in IMG/M
3300027395|Ga0209996_1007209All Organisms → cellular organisms → Bacteria → Proteobacteria1445Open in IMG/M
3300027533|Ga0208185_1000754All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria11708Open in IMG/M
3300027691|Ga0209485_1194271All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria629Open in IMG/M
3300027739|Ga0209575_10107118All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter → Prosthecobacter fusiformis1016Open in IMG/M
3300027754|Ga0209596_1130585All Organisms → cellular organisms → Bacteria → Proteobacteria1142Open in IMG/M
3300027802|Ga0209476_10049888All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium2228Open in IMG/M
3300027886|Ga0209486_11067316All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300027910|Ga0209583_10288199Not Available740Open in IMG/M
3300027915|Ga0209069_10170063All Organisms → cellular organisms → Bacteria → Proteobacteria1095Open in IMG/M
3300027954|Ga0209859_1035340All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria832Open in IMG/M
3300027959|Ga0209477_1162850Not Available732Open in IMG/M
(restricted) 3300028559|Ga0247831_1035704All Organisms → cellular organisms → Bacteria2887Open in IMG/M
(restricted) 3300028571|Ga0247844_1325943All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter513Open in IMG/M
(restricted) 3300028581|Ga0247840_10032055All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia4717Open in IMG/M
(restricted) 3300028581|Ga0247840_10240043All Organisms → cellular organisms → Bacteria982Open in IMG/M
3300028590|Ga0247823_10227583All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Roseibium1413Open in IMG/M
3300028599|Ga0265309_10911981All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae → Woeseiaceae bacterium604Open in IMG/M
3300028600|Ga0265303_11687093Not Available530Open in IMG/M
3300031547|Ga0310887_10742103Not Available612Open in IMG/M
3300031553|Ga0315547_1244292Not Available544Open in IMG/M
3300031562|Ga0310886_10475497Not Available750Open in IMG/M
3300031720|Ga0307469_10736748All Organisms → cellular organisms → Bacteria898Open in IMG/M
3300031847|Ga0310907_10214787All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium927Open in IMG/M
3300031852|Ga0307410_10051753All Organisms → cellular organisms → Bacteria2770Open in IMG/M
3300031911|Ga0307412_10277588All Organisms → cellular organisms → Bacteria → Proteobacteria1314Open in IMG/M
3300031943|Ga0310885_10830435All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300031965|Ga0326597_10623263Not Available1149Open in IMG/M
3300032005|Ga0307411_10452738All Organisms → cellular organisms → Bacteria1074Open in IMG/M
3300032174|Ga0307470_11009476Not Available662Open in IMG/M
3300032180|Ga0307471_102619969All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria639Open in IMG/M
3300032256|Ga0315271_10073558Not Available2535Open in IMG/M
3300032829|Ga0335070_11715970All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300033412|Ga0310810_11121736All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Tsuneonella → Tsuneonella troitsensis651Open in IMG/M
3300033480|Ga0316620_10144047All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1899Open in IMG/M
3300033550|Ga0247829_10489874All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300034094|Ga0335014_0017544All Organisms → cellular organisms → Bacteria → Proteobacteria3902Open in IMG/M
3300034113|Ga0364937_053838All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium754Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.15%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere5.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.62%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater3.85%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil3.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.85%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.08%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.08%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.08%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.08%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.08%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.31%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.31%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil2.31%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.31%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.54%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment1.54%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment1.54%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.54%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.54%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.54%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.54%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.54%
Activated SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge1.54%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.77%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.77%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.77%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat0.77%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.77%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.77%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater0.77%
Salt Marsh SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment0.77%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.77%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.77%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.77%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil0.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.77%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.77%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.77%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.77%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock0.77%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.77%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.77%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.77%
AgaveHost-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave0.77%
Anaerobic Digestor SludgeEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge0.77%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2199352024Bare-fallow DEEP SOILEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002916Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cmEnvironmentalOpen in IMG/M
3300004016Agave microbial communities from Guanajuato, Mexico - As.Ma.rzHost-AssociatedOpen in IMG/M
3300004019Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004183Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 3_LOW4EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006186Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009095Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011435Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2EnvironmentalOpen in IMG/M
3300014875Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_1_16_10DEnvironmentalOpen in IMG/M
3300014879Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10DEnvironmentalOpen in IMG/M
3300015256Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10DEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018053Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300018920Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 ISEnvironmentalOpen in IMG/M
3300020067Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020147Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13CEnvironmentalOpen in IMG/M
3300020192Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP6.G1EnvironmentalOpen in IMG/M
3300020202Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10EnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021953Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07EnvironmentalOpen in IMG/M
3300022209Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_13EnvironmentalOpen in IMG/M
3300024056Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025310Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025708Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025793Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027181Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027395Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027533Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)EnvironmentalOpen in IMG/M
3300027691Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027739Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027802Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_precipitate (SPAdes)EngineeredOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300027954Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)EnvironmentalOpen in IMG/M
3300027959Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant (SPAdes)EngineeredOpen in IMG/M
3300028559 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_1mEnvironmentalOpen in IMG/M
3300028571 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1EnvironmentalOpen in IMG/M
3300028581 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17mEnvironmentalOpen in IMG/M
3300028590Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30EnvironmentalOpen in IMG/M
3300028599Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300028600Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031553Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-240EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033480Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_BEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300034094Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077EnvironmentalOpen in IMG/M
3300034113Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
deeps_029951902199352024SoilMLLTSVAVVTMMLDAVAGSAPSRRSASGTSAPETPLTA
JGI10216J12902_11697907613300000956SoilMLTTSVAVVRKMLDAVAGSRPKRFSVSGIIAPQIPLTTHAP
JGI25389J43894_104096323300002916Grasslands SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHE
Ga0058689_1009657013300004016AgaveMLATSLAVVRKMLEAVAGSAPNRFRVSGISAPAMPATVQLTVIAMNT
Ga0055439_1017848113300004019Natural And Restored WetlandsMLTMSVAVVRKMLDAVAGSVPSRRKMRGTSVPDTPLTMQATTIA
Ga0062593_10341629923300004114SoilMLTTSVAVVRKMLEAVAGSAPSRRNVSGTSAPEMPLTTQLPIIARKTMSPRMGALGLCCMRA
Ga0066403_105124513300004183Freshwater SedimentMLTTSVMVVRKMLDAVAGSAPRRFSTKGMLVPAMPANMQLNDIA
Ga0063356_10188827033300004463Arabidopsis Thaliana RhizosphereMLATSVAVVTTMLEAVAGSAPRRFNASGTSAPEMPLMAQLPIIAA
Ga0062592_10157923323300004480SoilMLATSVAVVRKMLDAVAGSAPRLRSVSGMSAPARPLTTQLAHI
Ga0066809_1007093623300005168SoilMLTTSVIVVRKMLEAVAGSAPRRLSSKGIAVPATPAIMQLKAIALAV
Ga0070658_1019019213300005327Corn RhizosphereMSPMLETSVAVVTMILEAVAGSAPSFFSTSGTSAPETPERQQLPIIAIITTKP
Ga0070701_1019322533300005438Corn, Switchgrass And Miscanthus RhizosphereMRPMLDTSVAVVTMMLEAVAGSKPSLFNAMGTSAPEMPDRQQLPIIAII
Ga0070705_10068529323300005440Corn, Switchgrass And Miscanthus RhizosphereMLTTSVAVVRKMLEAVAGSAPIRRKISGTTAPAMPLTTQLPVMAMSTTK
Ga0070678_10065019713300005456Miscanthus RhizosphereMRPMLDTSVAVVTMMLEAVAGSKPSLFNAMGTSAPEMPDRQQLPIIAIIT
Ga0068867_10029426123300005459Miscanthus RhizosphereMLTTSVAVVRKMLEAVAGSAPSRFSASGTAAPATPDNAQLPVIATNVIAASS
Ga0070684_10071343623300005535Corn RhizosphereMLTTSVAVVRKMLDAIAGSAPMRLSPSGTAAPATPLATLDSDIAVKVISAS
Ga0070684_10121669213300005535Corn RhizosphereMLLTSVAVVTMMLEAVAGSAPRRRSTSGTSAPETPLTAQLPIIARQTT
Ga0068853_10190003123300005539Corn RhizosphereMLTTSVAVVRKMLEAVAGSAPARRSIMGTTAPAMPLTRQLQVMAMSTTKP
Ga0066701_1097355513300005552SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHEP
Ga0066692_1019955713300005555SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMP
Ga0066707_1082113313300005556SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHEPIMARNTTN
Ga0066698_1064579523300005558SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHEPIMARNTT
Ga0066706_1087840223300005598SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHEPIMARNTTNASITGCA
Ga0068852_10001449613300005616Corn RhizosphereMLETSVAVVTTMLEAVAGSAPSRFSASGTTAPDTPESAQLPIIAAFTTSASLSA
Ga0068859_10239393113300005617Switchgrass RhizosphereMLTTSVAVVRKIDDAVAGSAPRRCSVVGTSTPEMPLITQAITI
Ga0068863_10040367113300005841Switchgrass RhizosphereMLTTSVAVVRKMLEAVAGSKPRRFSVSGISAPERPLAMQEKTIARKTMN
Ga0081539_1042107313300005985Tabebuia Heterophylla RhizosphereMLDTSVAVVRKMLDAVAGSAPNRRSASGITAPMMPLIMHAAIIAITTITP
Ga0070715_1064511223300006163Corn, Switchgrass And Miscanthus RhizosphereMSPMLDTSVAVVTMMLDAVAGSKPSFFNTMGTRAPEMPDRQQLPIMAIITT
Ga0075369_1059766213300006186Populus EndosphereMLATSVAVVTTMLEAVAGSAPRRLSVSGTIAPEMPLIAQLPI
Ga0073934_1000935713300006865Hot Spring SedimentMLATSVAVVRKMLDAVAGSAPIFRSPSGMRAPEIPLTTQLPVMASSTTRLSMSAASNCWT
Ga0075434_10130292213300006871Populus RhizosphereMLTTSVAVVRKMLEAVAGSAPKRFRVRGTIAPHMP
Ga0075434_10171440013300006871Populus RhizosphereMLTQSVAVVRKMLDAVAGSNPIRFSATGTSTPDSPLAMHENTIA
Ga0075426_1147127023300006903Populus RhizosphereMLTQSVAVVRKMLDAVAGSKPIRFSATGTSTPDRPLAMHDSTIAA
Ga0075424_10085234523300006904Populus RhizosphereMLTTSVAVVRKMLEAVAGSAPKRFRVRGTIAPHMPLA
Ga0079216_1115526023300006918Agricultural SoilMLATSVAVVRKMLDAVAGSAPILLSVIGTSAPDTPLITQLKVMAIATIAP
Ga0079218_1075112533300007004Agricultural SoilMLTTSEAVVRKMLEAVAGSAPSRRSASGTAAPAIPLATQAPIIARNTTSASD
Ga0066710_10296828213300009012Grasslands SoilMLTMSVAVVTKMLEAVAGSAPSFFRVSGTSAPQTLLTTQLP
Ga0079224_10314065513300009095Agricultural SoilMLATSVAVVRKMLDAVAGSAPSLRKVSGTSAPETPLTRQLV
Ga0134121_1295995713300010401Terrestrial SoilMLTTSVAVVKKMLEAVAGSAPMRRKASGTTAPEIPLTVQLAAM
Ga0137426_102530113300011435SoilMLATSVAVVRKMLEAVAGSAPSFLSVSGTSAPETPLIMQLPIIA
Ga0180083_106622523300014875SoilMLTTSVAVVRKMLEAVAGSKPKRFNVIGIREPQSPLMMQAPTSAIHT
Ga0180062_100154563300014879SoilMLTTSVAVVRKMLEAVAGSKPKRFNVIGIREPQSPLMMQAPT
Ga0180073_101584733300015256SoilMLTTSVAVVRKMLEAVAGSKPKRFNVIGIREPQSPLMMQAPTS
Ga0184605_1039227723300018027Groundwater SedimentMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPAMPLAMHEPT
Ga0184626_1026514913300018053Groundwater SedimentMLTTSVAVVRKMLEAVAGSKPKRFSVSGTIAPEMPLAMQ
Ga0190265_1181317733300018422SoilMLATSVAVVRKMLEAVAGSAPSLRSPSGMSAPEIPLTTQLAVIAS
Ga0190275_1329923913300018432SoilMLTTSVVVVRKILEAVAGSAPKRFSVSGMRAPEIP
Ga0066667_1105645113300018433Grasslands SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHEPIMARNTTNASIT
Ga0190274_1305427013300018476SoilMLATSVAVVTKMLEAVAGSAPRRLSASGTSAPETPLIAQLPIIANVTTTPRMNA
Ga0190274_1384646723300018476SoilMLATSVAVVRKMLEAVAGSAPIRRRIMGTTAPEMPLIVQLPIMARV
Ga0190271_1179019913300018481SoilMLATSVAVVTTMLEEVAGSAPRRFSASGTSAPEIPLIAQLPIIARQTTTPSITACGESCETA
Ga0190273_1088692713300018920SoilMLAMSVAVVRKMLDAVAGSAPSFRKVIGISAPEMPLMTQLP
Ga0180109_100527913300020067Groundwater SedimentMLTTSVAVVRKILEAVAGSRPKRFNVIGIRAPHTPLVTHAPTSAAHTTR
Ga0196976_108482313300020147SoilMLTTSVAVVRKIADAVAGSWPKRFSVSGISAPDRPLAMHAPTMAR
Ga0163147_1018232413300020192Freshwater Microbial MatMLATSVAVVRKMLEAVAGSSPSRFSVKGIRAPERPL
Ga0196964_1044627423300020202SoilMLTTSVAVVRKMLEAVAGSKPKRFSVSGMIAPETPLAMHEAIIAR
Ga0196964_1066278313300020202SoilMLTTSVAVVRKMLDAVAGSRPKRFSVSGMMAPEMPLAMQEAIMA
Ga0210409_1036560813300021559SoilMLQQSVAVVRKMLDAVAGSAPIRRRMSGTSAPAIPLIAHDAVIANHTQRPSMTGL
Ga0213880_1011583823300021953Exposed RockMLDTSVAVVTMMLEAVAGSAPKRFSARGTRAPETPLTQQLPII
Ga0224497_1020168123300022209SedimentMLATSVAVVRKMLDAVAGSAPMRRSVRGMSAPARPLT
Ga0124853_133815313300024056Freshwater WetlandsMLTTSVAVVRKILEAVAGSAPKRLSVNGTMAPEIPLATQLP
Ga0137417_122122413300024330Vadose Zone SoilMLTTSVAVVRKMLEAVAGSMLEAVAGSKPRRFSVSG
Ga0209172_1057179823300025310Hot Spring SedimentMLATSVAVVRKMLDAVAGSAPIFRSPSGMRAPEIPLTTQLPVMASATIDASA
Ga0207656_1022556713300025321Corn RhizosphereMLTTSVAVVRKMLEAIAGSAPMRFSPSGTAAPATPLATL
Ga0207656_1029936213300025321Corn RhizosphereMLLTSVAVVTMMLEAVAGSAPRRRSTSGTSAPETPLTAQLPIIARQTTTP
Ga0209201_109620923300025708Anaerobic Digestor SludgeMLATSVAVVRKMLEAVAGSAPSRRSRIGTSVPKMPLTTQAPAMAARTINPSEK
Ga0210065_101847613300025793Natural And Restored WetlandsMLTTSVAVVRKMLDAVAGSAPSFWSVIGTSTPVIPLATHAPVI
Ga0207645_1087090813300025907Miscanthus RhizosphereMLTTSVAVVRKMLDAVAGSKPKRFSVSGMIAPEMPLAMHEEI
Ga0207705_1005513113300025909Corn RhizosphereMSPMLETSVAVVTMILEAVAGSAPSFFSTSGTSAPETPERQQLPIIAIITTKPSINACGL
Ga0207705_1060761223300025909Corn RhizosphereMLTTSVAVVRKMLDAIAGSAPMRFSPSGTAAPATPLATLDS
Ga0207660_1024383633300025917Corn RhizosphereMLTTSVAVVRKMLDAVAGSRPMRFSVIGISAPHSPL
Ga0207657_1098116623300025919Corn RhizosphereMLETSVAVVTTMLEAVAGSAPSRFSASGTTAPDTPE
Ga0207652_1025521833300025921Corn RhizosphereMLETSVAVVTMMLEAVAGSAPRRFSAIGTSAPETPLSAQLPIIAAFTTRASLSAC
Ga0207670_1063266433300025936Switchgrass RhizosphereMLATSVAVVTKMLEAVAGSAPMRFNASGTMAPEMPLIAQLPVIASTTTMPNIAACSDFWETASR
Ga0207704_1027146313300025938Miscanthus RhizosphereMLTTSVAVVRKMLEAVAGSAPARRSIMGTTAPAMPLTRQL
Ga0207704_1153837913300025938Miscanthus RhizosphereMLATSVAVVRKILEAVAGSAPSRLRARGMSAPATPLITQLAI
Ga0207704_1181215513300025938Miscanthus RhizosphereMIVASNSSKPMLATSVAVVTKMLEAVAGSAPKRFNPSGTSAPEMPLMAQLP
Ga0207691_1032347823300025940Miscanthus RhizosphereMLATSVAVVTKMLEAVAGSAPMRFNASGTMAPEMPLIAQLPVIASTTTMPNIAAC
Ga0207661_1166153313300025944Corn RhizosphereMLTTSVAVVRKMLDAIAGSAPMRLSPSGTAAPATPLA
Ga0207667_1057785933300025949Corn RhizosphereMLLTSVAVVTMMLEAVAGSAPSRRSTSGTSAPETPLTAQLPIIARQTTTPSEIAWGTSWNRASTY
Ga0207668_1037957133300025972Switchgrass RhizosphereMLTTSVAVVRKIDEAVAGSAPSRFSVVGTSTPETPLITQAITIARSVMTASIH
Ga0207668_1125355223300025972Switchgrass RhizosphereMLTTSVAVVRKMLEAVAGSAPSRFSASGTAAPATPDNAQLPVIAT
Ga0207677_1175309913300026023Miscanthus RhizosphereMLTTSVAVVRKMLDAIAGSAPMRFSPSGTAAPATPLATLDSDIAAKV
Ga0207641_1010559333300026088Switchgrass RhizosphereMLTTSVAVVRKMLDAVAGSAPSRFSPSGTAAPAMPDMAQLPAIAT
Ga0207675_10243967633300026118Switchgrass RhizosphereMLTVSVAVVKNMLDAIAGSAPTRLRHSGTAAPAMPLTTLLRV
Ga0207683_1185929423300026121Miscanthus RhizosphereMLTTSVAVVRKMLDAVAGSAPRRRSPSGTAAPAMPDTAQLPAMATNVISA
Ga0207698_1053095223300026142Corn RhizosphereMLQTSVAVVRKMLEAVAGSAPSRRRISGMSAPATPLTAHEAVIAN
Ga0207698_1064746413300026142Corn RhizosphereMSPMLETSVAVVTMILEAVAGSAPSLFSTSGTSAPEMPDRQ
Ga0209055_119912813300026309SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHEPIM
Ga0209647_116119233300026319Grasslands SoilMLTQSVAVVRKMLDAVAGSKPILFSVIGTSAPERPLAMH
Ga0209801_101335113300026326SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHEPIMA
Ga0209161_1032813723300026548SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPEMPLAMHEPIMARNTTNASITGC
Ga0208997_100232043300027181Forest SoilMLTTSVAVVRKMLEAVAGSKPRRFSVSGTIAPAMPLAMHEPTMARN
Ga0209996_100720933300027395Arabidopsis Thaliana RhizosphereMLTTSVAVVRKMLEAVAGSAPIFLSVSGTIAPEMPLAMQ
Ga0208185_100075413300027533SoilMLTTSVAVVRKILEAVAGSKPKRFNVIGIREPQSPLMMQAPTSAIHTTTASAM
Ga0209485_119427113300027691Agricultural SoilMLTTSVAVVRKMLDAVAGSAPKRFSVNGTIAPHTPLATQLATSASHTTRP
Ga0209575_1010711813300027739FreshwaterMLTTSVAVVRKMLEAVAGSAPSFLKVRGINAPQRPLTMQLV
Ga0209596_113058533300027754Freshwater LakeMLATSVAVVKKILEAVQGSAPSRFKTNGMNAPERPLIM
Ga0209476_1004988843300027802Activated SludgeMLATSVAVVTMMLDAVAGSAPSRLSARGTTAPETPLTAQLPIMARQTATPSHRAWADSWE
Ga0209486_1106731613300027886Agricultural SoilMLTTSVAVVRKIDEAVAGSAPSRFSVVGTSTPETPLIMQA
Ga0209583_1028819913300027910WatershedsMLVTSVAVVTMMLDAVAGSAPKRFNASGTRAPEIPLMQQLPIIARVT
Ga0209069_1017006333300027915WatershedsMLVTSVAVVTMMLEAVAGSAPKRFNASGTRAPEIPLMQQLPT
Ga0209859_103534023300027954Groundwater SandMLVTSVAVVRKMLEAVAGSNPSLLSVSGIIAPEIPLA
Ga0209477_116285013300027959Activated SludgeMLATSVAVVTMMLDAVAGSAPSRLSARGTTAPETPLTAQLPIMARQTATPSHRAWADS
(restricted) Ga0247831_103570413300028559FreshwaterMLTTSVAVVRKMLEAVAGSAPSFLRMIGMIAPETPLTEQLPTIA
(restricted) Ga0247844_132594313300028571FreshwaterMLITSVAVVRKMLDAVAGSAPKRRKIRGIKAPQRPLTTQ
(restricted) Ga0247840_1003205543300028581FreshwaterMLTTSVAVVRKMLEAVAGSAPSFLRMIGMIAPETPLTEQLPTIARKTTPES
(restricted) Ga0247840_1024004313300028581FreshwaterMLTMSVAVVKKILLAVAGSAPKRRSTSGIMAPQRPLMMQLAVMAMKT
Ga0247823_1022758313300028590SoilMLATSVAVVRKMLDAVAGSAPTRRSARGISAPAIPLMMQLAVIASATI
Ga0265309_1091198123300028599SedimentMLTTSVAVVRKILEAVAGSAPSLFSVKGTITPVTPLATQ
Ga0265303_1168709323300028600SedimentMLATSVAVVKKILEAVAGSAPNFFKPMGTMAPDIPLTTQLPIIAHNT
Ga0310887_1074210313300031547SoilMLTTSVAVVRKMLDAVAGSKPKRFSVSGMIAPEMPLAMHEEIM
Ga0315547_124429213300031553Salt Marsh SedimentMLTTSVAVVRNILDAVTGSAPKRLNVRGTITPAMPLAMQAPVIASS
Ga0310886_1047549713300031562SoilMRPMLETSVAVVTMILDAVAGSAPRRFSTSGTSAPEMPERQQLPII
Ga0307469_1073674823300031720Hardwood Forest SoilMLTTSVAVVRKMLEAVAGSKPKRFSVSGTSAPDTPLATQAPTM
Ga0310907_1021478723300031847SoilMLTTSVAVVRKIDEAVAGSAPNRCSVVGTNTPEIP
Ga0307410_1005175343300031852RhizosphereMLAMSLAVVRKMLEAVAGSAPRRLRVSGMSAPEMPATVQLATIATATT
Ga0307412_1027758813300031911RhizosphereMLTTSVAVVRKMLDAVAGSRPKRLSVSGMMAPEMPLAM
Ga0310885_1083043523300031943SoilMLTTSVAVVRKIDEAVAGSAPSRFSVVGTSTPETPLITQAITIARRV
Ga0326597_1062326313300031965SoilMLATSVAVVTKMLDAVAGSKLNFFRVIGTNAPKIPLMTQL
Ga0307411_1045273813300032005RhizosphereMLAMSLAVVRKILEAVAGSAPSRFKVSGMRAPEMPATVQLATMDT
Ga0307470_1100947613300032174Hardwood Forest SoilMLTQSVAVVRKMLEAVAGSKPIRFSATGTSTPESP
Ga0307471_10261996913300032180Hardwood Forest SoilMLTMSVAVVRKMLEAVAGSAPRRLRPIGTSAPEIPLAIQLP
Ga0315271_1007355823300032256SedimentMLQTSVIVVRKILEAVAGSAPSRFSTSGMVVPAIPATMQLNDIATMVINPR
Ga0335070_1171597013300032829SoilMLATSVAVVRKMLEAVAGSNPSFFRVSGIRAPAIPLTTQLAIM
Ga0310810_1112173633300033412SoilMLATSLAVVRKMLEAVAGSAPSRFSTIGISAPAIPDTVQAMTIARKTTE
Ga0316620_1014404713300033480SoilMLTTSVAVVRKMLDAVAGSVPKRLSVSGTRAPEMPLMV
Ga0247829_1048987413300033550SoilMLATSVAVVRKMLDAVAGSAPTRRSARGISAPAIPLMMQ
Ga0335014_0017544_3707_38893300034094FreshwaterMLATSVAVVRKMLDAVAGSAPNFRKISGIVAPETPLTMQLPIIARNTINAKAKARSLDCQ
Ga0364937_053838_577_7533300034113SedimentMLTTSVAVVRKMLEAVAGSKPKRFNVIGIREPQSPLMMQAPTNAIHTTTASAMAFGLP


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