Metagenome / Metatranscriptome Family F101471

Basic Information
Family ID	F101471
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	66 residues
Representative Sequence	MKTLIATATLTIMFLSAGAFAGNDTQMATVAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Number of Associated Samples	97
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.57 %
% of genes near scaffold ends (potentially truncated)	24.51 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Most Common Taxonomy
Group	Bacteria (66.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (15.686 % of family members)
Environment Ontology (ENVO)	Unclassified (42.157 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (39.216 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 15.96% β-sheet: 0.00% Coil/Unstructured: 84.04%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08281	Sigma70_r4_2	4.90
PF02787	CPSase_L_D3	1.96
PF10099	RskA	1.96
PF02786	CPSase_L_D2	1.96
PF04542	Sigma70_r2	1.96
PF00486	Trans_reg_C	0.98
PF00149	Metallophos	0.98
PF00171	Aldedh	0.98
PF02826	2-Hacid_dh_C	0.98
PF05226	CHASE2	0.98
PF14588	YjgF_endoribonc	0.98
PF13670	PepSY_2	0.98
PF00289	Biotin_carb_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.96
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.96
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.96
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.96
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.98
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.98
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.98
COG4252	Extracytoplasmic sensor domain CHASE2 (specificity unknown)	Signal transduction mechanisms [T]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.84 %
Unclassified	root	N/A	33.33 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.08 %
Unclassified	root	N/A	33.33 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.98 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37.25 %
Unclassified	root	N/A	33.33 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Aestuariivirgaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae	26.47 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.92 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Aestuariivirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga	26.47 %
unclassified Phyllobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae	3.92 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Aestuariivirga litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	26.47 %
Phyllobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium	3.92 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090001\|CNB_F6ESG4R02JGWU5	Not Available	529	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig809481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium	718	Open in IMG/M
3300000956\|JGI10216J12902_106810785	All Organisms → cellular organisms → Bacteria → Proteobacteria	1368	Open in IMG/M
3300004114\|Ga0062593_102955375	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300004463\|Ga0063356_100075558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	3529	Open in IMG/M
3300004479\|Ga0062595_100376788	All Organisms → cellular organisms → Bacteria → Proteobacteria	1003	Open in IMG/M
3300005347\|Ga0070668_100048881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3254	Open in IMG/M
3300005406\|Ga0070703_10461402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	565	Open in IMG/M
3300005655\|Ga0073905_10035604	All Organisms → cellular organisms → Bacteria → Proteobacteria	2373	Open in IMG/M
3300005659\|Ga0073900_10122813	All Organisms → cellular organisms → Bacteria → Proteobacteria	1183	Open in IMG/M
3300005844\|Ga0068862_101845700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	614	Open in IMG/M
3300006046\|Ga0066652_100321117	All Organisms → cellular organisms → Bacteria → Proteobacteria	1383	Open in IMG/M
3300006195\|Ga0075366_10618225	Not Available	672	Open in IMG/M
3300006881\|Ga0068865_101619842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	582	Open in IMG/M
3300009032\|Ga0105048_10145097	All Organisms → cellular organisms → Bacteria → Proteobacteria	2994	Open in IMG/M
3300009053\|Ga0105095_10415662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	743	Open in IMG/M
3300009147\|Ga0114129_11236307	Not Available	929	Open in IMG/M
3300009448\|Ga0114940_10202310	Not Available	874	Open in IMG/M
3300009553\|Ga0105249_10315732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1572	Open in IMG/M
3300009553\|Ga0105249_12617120	Not Available	577	Open in IMG/M
3300009803\|Ga0105065_1042879	Not Available	620	Open in IMG/M
3300009873\|Ga0131077_10028463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8946	Open in IMG/M
3300010045\|Ga0126311_11472353	Not Available	570	Open in IMG/M
3300010400\|Ga0134122_10209399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1622	Open in IMG/M
3300011406\|Ga0137454_1035336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium	747	Open in IMG/M
3300011408\|Ga0137460_1013472	All Organisms → cellular organisms → Bacteria → Proteobacteria	1216	Open in IMG/M
3300011421\|Ga0137462_1192851	Not Available	506	Open in IMG/M
3300011424\|Ga0137439_1053122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	788	Open in IMG/M
3300011436\|Ga0137458_1016703	All Organisms → cellular organisms → Bacteria → Proteobacteria	1761	Open in IMG/M
3300012040\|Ga0137461_1207663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	574	Open in IMG/M
3300012225\|Ga0137434_1006561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1221	Open in IMG/M
3300012226\|Ga0137447_1013001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1173	Open in IMG/M
3300012227\|Ga0137449_1098939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	634	Open in IMG/M
3300012227\|Ga0137449_1135725	Not Available	539	Open in IMG/M
3300012231\|Ga0137465_1195143	Not Available	609	Open in IMG/M
3300012668\|Ga0157216_10175248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1025	Open in IMG/M
3300014862\|Ga0180096_1002483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1035	Open in IMG/M
3300014870\|Ga0180080_1086429	Not Available	550	Open in IMG/M
3300015201\|Ga0173478_10844753	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300015251\|Ga0180070_1016694	Not Available	838	Open in IMG/M
3300015253\|Ga0180081_1032732	Not Available	838	Open in IMG/M
3300015254\|Ga0180089_1035975	Not Available	948	Open in IMG/M
3300015360\|Ga0163144_11649330	Not Available	553	Open in IMG/M
3300017997\|Ga0184610_1160152	Not Available	742	Open in IMG/M
3300018028\|Ga0184608_10133743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1060	Open in IMG/M
3300018059\|Ga0184615_10255203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	982	Open in IMG/M
3300018063\|Ga0184637_10101025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1776	Open in IMG/M
3300018066\|Ga0184617_1007580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	2047	Open in IMG/M
3300018078\|Ga0184612_10424743	Not Available	665	Open in IMG/M
3300018079\|Ga0184627_10156892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300018429\|Ga0190272_11037329	Not Available	787	Open in IMG/M
3300018429\|Ga0190272_11965121	Not Available	618	Open in IMG/M
3300018469\|Ga0190270_11323792	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300018476\|Ga0190274_11497646	Not Available	766	Open in IMG/M
3300018481\|Ga0190271_13059302	Not Available	561	Open in IMG/M
3300019212\|Ga0180106_1132746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	569	Open in IMG/M
3300019232\|Ga0180114_1383412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium	573	Open in IMG/M
3300019238\|Ga0180112_1268514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	745	Open in IMG/M
3300019244\|Ga0180111_1128520	Not Available	500	Open in IMG/M
3300019244\|Ga0180111_1387662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	649	Open in IMG/M
3300019269\|Ga0184644_1099826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	695	Open in IMG/M
3300019377\|Ga0190264_11899972	Not Available	541	Open in IMG/M
3300019487\|Ga0187893_10321794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1089	Open in IMG/M
3300020063\|Ga0180118_1216959	Not Available	543	Open in IMG/M
3300020065\|Ga0180113_1033591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → unclassified Phyllobacteriaceae → Phyllobacteriaceae bacterium	556	Open in IMG/M
3300020067\|Ga0180109_1349809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	671	Open in IMG/M
3300020068\|Ga0184649_1083090	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300021090\|Ga0210377_10774910	Not Available	521	Open in IMG/M
3300021339\|Ga0193706_1123091	Not Available	706	Open in IMG/M
3300022756\|Ga0222622_11413409	Not Available	512	Open in IMG/M
3300025313\|Ga0209431_10192778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1612	Open in IMG/M
3300025325\|Ga0209341_10164030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1867	Open in IMG/M
3300025935\|Ga0207709_11170684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	633	Open in IMG/M
3300025942\|Ga0207689_11828560	Not Available	501	Open in IMG/M
3300025972\|Ga0207668_10139873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1860	Open in IMG/M
3300026325\|Ga0209152_10391296	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300027724\|Ga0209582_1268690	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300027841\|Ga0209262_10397555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	672	Open in IMG/M
3300027897\|Ga0209254_10800629	Not Available	638	Open in IMG/M
3300027959\|Ga0209477_1091822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300031096\|Ga0308193_1040671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	672	Open in IMG/M
3300031152\|Ga0307501_10255020	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031548\|Ga0307408_101753565	Not Available	593	Open in IMG/M
3300031730\|Ga0307516_10082619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3054	Open in IMG/M
3300031731\|Ga0307405_10194186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1469	Open in IMG/M
3300031834\|Ga0315290_10263784	All Organisms → cellular organisms → Bacteria → Proteobacteria	1505	Open in IMG/M
3300031911\|Ga0307412_10681138	Not Available	880	Open in IMG/M
3300031997\|Ga0315278_10880841	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300032002\|Ga0307416_101098879	All Organisms → cellular organisms → Bacteria → Proteobacteria	900	Open in IMG/M
3300032012\|Ga0310902_10336080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	942	Open in IMG/M
3300032143\|Ga0315292_10014640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5182	Open in IMG/M
3300032397\|Ga0315287_10058403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4262	Open in IMG/M
3300032401\|Ga0315275_12600082	Not Available	522	Open in IMG/M
3300032420\|Ga0335397_10048131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4705	Open in IMG/M
3300033814\|Ga0364930_0091525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1038	Open in IMG/M
3300034126\|Ga0370486_191664	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300034127\|Ga0370489_0047951	All Organisms → cellular organisms → Bacteria → Proteobacteria	1237	Open in IMG/M
3300034155\|Ga0370498_048851	Not Available	936	Open in IMG/M
3300034178\|Ga0364934_0063705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	1369	Open in IMG/M
3300034194\|Ga0370499_0019500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1561	Open in IMG/M
3300034643\|Ga0370545_020037	Not Available	1115	Open in IMG/M
3300034643\|Ga0370545_088031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → Aestuariivirga litoralis	659	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.43%
Host-Associated	Host-Associated	16.67%
Engineered	Engineered	4.90%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	46.08%
Terrestrial	Environmental → Terrestrial	32.35%
Plants	Host-Associated → Plants	16.67%
Wastewater	Engineered → Wastewater	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	29.41%
Sediment	Environmental → Aquatic → Sediment	23.53%
Freshwater	Environmental → Aquatic → Freshwater	22.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Activated Sludge	Engineered → Wastewater → Activated Sludge	4.90%
Floodplain	Environmental → Terrestrial → Floodplain	1.96%
Roots	Host-Associated → Plants → Roots	1.96%
Cave	Environmental → Terrestrial → Cave	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	23.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.84%
Lake	Environmental → Aquatic → Freshwater → Lake	5.88%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	4.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Loam	Environmental → Terrestrial → Soil → Loam	2.94%
Ice	Environmental → Aquatic → Freshwater → Ice	1.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Pond	Environmental → Aquatic → Freshwater → Pond	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	23.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.71%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.84%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.90%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	15.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.76%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	10.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.86%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.92%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	3.92%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.98%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.98%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.98%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.98%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.98%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090001	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNB	Host-Associated	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005655	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant	Engineered	Open in IMG/M
3300005659	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Kit	Engineered	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009032	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-05	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009448	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011406	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2	Environmental	Open in IMG/M
3300011408	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT723_2	Environmental	Open in IMG/M
3300011421	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT769_2	Environmental	Open in IMG/M
3300011424	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT200_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012227	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT436_2	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300014862	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_1Da	Environmental	Open in IMG/M
3300014870	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10D	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015251	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_10D	Environmental	Open in IMG/M
3300015253	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT590_16_10D	Environmental	Open in IMG/M
3300015254	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D	Environmental	Open in IMG/M
3300015360	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019212	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT25_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019232	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT530_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027724	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Kit (SPAdes)	Engineered	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027959	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant (SPAdes)	Engineered	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032420	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (spades assembly)	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034126	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_16	Environmental	Open in IMG/M
3300034127	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_16	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034194	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_17	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
CNB_01380320	2088090001	Quercus Rhizosphere	MKTLIATATLTIMFLSAGAFAGNGIQMATLAKSQISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
KansclcFeb2_06863720	2124908045	Soil	MKTLIATATLTIMFLSAGAFAGNDTKMETVAKSPISNVTVIIKNGQWPVKGQTSLDACSVRRCLDA
JGI10216J12902_1068107854	3300000956	Soil	MKTVLATATLTIMFLSAGAFAGNDTRTAPVAESQVANVTVIAKNGQWPVKGQISLDACSVRRCLDA*
Ga0062593_1029553751	3300004114	Soil	EETKMKTVLATATLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA*
Ga0063356_1000755585	3300004463	Arabidopsis Thaliana Rhizosphere	MKTLIATATLTIMFLSAGAFAGNDTKMETIAKSPISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA*
Ga0062595_1003767881	3300004479	Soil	MKTVLATATLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA*
Ga0070668_1000488813	3300005347	Switchgrass Rhizosphere	MKTVLATATLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACLVRRCLDA*
Ga0070703_104614021	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	TLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA*
Ga0073905_100356043	3300005655	Activated Sludge	MKTLIATATLTIMFLSAGAFAGNDIKMASGAKPQVSNVTVILKNGQWPVKGQTSFDACSVRRCLDA*
Ga0073900_101228131	3300005659	Activated Sludge	MKTLIATATLTIMFLSVGAFAGNDIKMASGAKPQVSNVTVILKNGQWPVKGQTSFDACSVRRCLDA*
Ga0068862_1018457001	3300005844	Switchgrass Rhizosphere	IMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACLVRRCLDA*
Ga0066652_1003211172	3300006046	Soil	MKTLIATTTLTIMFLSAGAFAGNDIQMATVAKSPISNVTVITKNGQWPAKGQTSFDACSVKRCLDA*
Ga0075366_106182251	3300006195	Populus Endosphere	MKTLIATATLTIMFLSAGAFAGNDIQMATLAKSPISNVTVIIKNGQWPVKGQTSLDACSI
Ga0068865_1016198421	3300006881	Miscanthus Rhizosphere	KMKTVLATATLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACLVRRCLDA*
Ga0105048_101450973	3300009032	Freshwater	MKTLIATATLTIMFLSAGAFAGNDTHMATVAKAPISNVTVITKNGQWPVKGQTSFDACSVRRCLDA*
Ga0105095_104156621	3300009053	Freshwater Sediment	MKTVLATATLTIMFLSAGAFAGNDTRTAPVAKSQVTNVTVIAKNGQWPVKGQISLDACSVRRCLDA*
Ga0114129_112363071	3300009147	Populus Rhizosphere	MKTLIATATLTVMFLSAGAFAGNDMTAATVAKSQISNVTVIAKNGQWPVKGQTSFDACSVRRCLDA*
Ga0114940_102023102	3300009448	Groundwater	MKTLIATATLTIMFLSAGAFAGNDTQMATVAKSQISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA*
Ga0105249_103157323	3300009553	Switchgrass Rhizosphere	MKTVLATASLTIMFLSAGAFAGIETKIAAVATPPVTNVTVIAKNGQWPVKGQISLDACLVRRCLDA*
Ga0105249_126171201	3300009553	Switchgrass Rhizosphere	MKTLIATATLTIMFLSAGAFAGNDIQMATLAKSPISNVTVIIKNGQWPVKGQTSLDACSIRRCLDA*
Ga0105065_10428792	3300009803	Groundwater Sand	MKTALATAALTIMFLSAGAFAGNDTQTTPVAKSQITNVTVIAKNGQWPVKGQTSLDACSVRRCLDA*
Ga0131077_100284633	3300009873	Wastewater	MKTLIATATLTIMFLSAGAFAGNDIKMASGAKHQVSNVTVILKNGQWPVKGQTSFDACSVRRCLDA*
Ga0126311_114723531	3300010045	Serpentine Soil	MKTLIATATLTIMFLSAGAFAGNDNQMATLAKTPISNVTVITKNGQWPMKGQTSLDACSVRRCLDA*
Ga0134122_102093991	3300010400	Terrestrial Soil	MKTVLATASLTIMFLSAGAFAGIETKIAAVATPPVTNVTVIAKNGQWPVKGQISLDACSVRRCLDA*
Ga0137454_10353362	3300011406	Soil	MKTVIATATLTIMFLSAGAFAGNDTRTAPVAKSEITNVTVIIKNGQWPVKGQISVDACSLRRCMDA*
Ga0137460_10134723	3300011408	Soil	MKTVIATATLAIMFLSAGAFAGNDTRTAPVAKSEITNVTVITKNGQWPVKGQISFDACSLRRCMDA*
Ga0137462_11928511	3300011421	Soil	MKTLIATATLTIMFLSAGAFAGNDTRTAPVAKSEITNVTVIIKNGQWPVKGQLSVDACSLRRCMDA*
Ga0137439_10531222	3300011424	Soil	MKTLIATATLTIMFLSAGAFAGNDIQMATVAKTPISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA*
Ga0137458_10167033	3300011436	Soil	MKTVIATATLAIMFLSAGAFAGNDTRTAPVAKSEITNVTVIIKNGQWPVKGQISVDACSLRRCMDA*
Ga0137461_12076631	3300012040	Soil	TATLTIMFLSAGAFAGNDLPSAPVAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA
Ga0137434_10065612	3300012225	Soil	MKTLLATATLTIMFLSAGAFAGNDLPSAPVVNSHITNVTVISKNGQWPVIGQISLDACSVRRCLDA*
Ga0137447_10130011	3300012226	Soil	MKTVLATATLTIMFLSAGAFAGNDLPSAPVAKSQITNVTVITKNGQWPVKGQTSFDACSVRRCLDA*
Ga0137449_10989392	3300012227	Soil	MKTVIATATLTIMFLSAGAFAGNDTRTAPVAKSEITNVTVITKNGQWPVKGQISFDACSLRRCMDA*
Ga0137449_11357251	3300012227	Soil	MKTVIATATLTIMFLSAGAFAGNDTQTAPVAKSHITNVTVIAKNGQWPVKGQISFDACSVRRCLDA*
Ga0137465_11951432	3300012231	Soil	MKTLIVTATLTIMFLSAGAFAGNDIQMATAAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCVDA*
Ga0157216_101752483	3300012668	Glacier Forefield Soil	MKTLIATATLTIMFLSAGAFAGNDIQMATVANTQISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA*
Ga0180096_10024832	3300014862	Soil	MKTLLATATLTIMFLSAGAFAGNDTRTAPVAKSEITNVTVIIKNGQWPVKGQISVDACSLRRCMDA*
Ga0180080_10864292	3300014870	Soil	MKTVIATATLAIMFLSAGAFAGNDTRTAPVAKSEITNVTVIIKNGQWPVKGQISFDACSLRRCMDA*
Ga0173478_108447531	3300015201	Soil	LTIMFLSAGAFAGNDTKMETVAKSPISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA*
Ga0180070_10166941	3300015251	Soil	MKTLLATATLTIMFLSAGAFAGNETLTAPVAKSQITNVTVIAKNGQWPVKVHESLDACSVRRCLDA*
Ga0180081_10327322	3300015253	Soil	MKTLIATATLTIMFLSAGAFAGNDTQMATAAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCLDA*
Ga0180089_10359753	3300015254	Soil	MKTVLATATLTIMFLSAGAFAGNDMTAATTARSQISNVTVIAKNGHWPVKGQTSFDACSVRRCLDA*
Ga0163144_116493301	3300015360	Freshwater Microbial Mat	MKTLIATATLTIMFLSAGAFAGNDTQMATVAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCLDA*
Ga0184610_11601522	3300017997	Groundwater Sediment	MKTVLATATLTIMFLSAGAFAGNDMPSAPVAKSQITNVTVIAKNGQSPVKGQISLDACSLRRCLDA
Ga0184608_101337431	3300018028	Groundwater Sediment	MKTALATATLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACSLRRCLDA
Ga0184615_102552032	3300018059	Groundwater Sediment	MKTLIATATLTIMFLSAGAFAGNDTQTAPVAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA
Ga0184637_101010252	3300018063	Groundwater Sediment	MKTVLATATLAIMFLSAGAFAGNDTQTASVAKSQITNVTVISKNGQWPVNGQISFDACSIRRCLDA
Ga0184617_10075802	3300018066	Groundwater Sediment	MKTLIATATLTIMFLSAGAFAGNDIQMATLAKSAISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0184612_104247432	3300018078	Groundwater Sediment	MKTLIATATLTIMFLSAGAFAGNDTQMATVAKSQISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0184627_101568923	3300018079	Groundwater Sediment	MKTVLATATLAIMFLSAGAFAGNDTQTASVTKSQITNVTVISKNGQWPVKGQISFDACSLRRCLDA
Ga0190272_110373292	3300018429	Soil	MKTVLATATLTIMFLSAGAFAGNDTQTAPVAKSQVTNVTVIAKNGQWPVKGQISLDACSVRRCLDA
Ga0190272_119651211	3300018429	Soil	MKTLIATATLTIMFLSAGAFAGNDIQMATVAKTPISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0190270_113237922	3300018469	Soil	MKTLIATATLTIMFLSAGAFAGNDNQMATVAKSPISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Ga0190274_114976461	3300018476	Soil	MKTLIATATLTIMFLSAGAFAGNDMPMATLAKAPISNMTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0190271_130593021	3300018481	Soil	MKTLIATATLTIMFLSAGAFAGNDIQMATLVKSPISNVTVITKNGQWPVKGQTSLDACSVRRCLDA
Ga0180106_11327461	3300019212	Groundwater Sediment	PLSLEETKMKTVLATAALTIMFLSAGAFAGNDTQKAPVAKSHITNVTVISKNGQWPVKGQISLDACSVRRCLDA
Ga0180114_13834122	3300019232	Groundwater Sediment	SLKETKMKTLIATATLTVMFLSAGAFAGNDMTAATSAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Ga0180112_12685141	3300019238	Groundwater Sediment	KMKTLIATATLTIMFLSAGAFAGNDIQMATVAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Ga0180111_11285201	3300019244	Groundwater Sediment	RLWRRHKMKTVIATATLTIMFLSAGAFAGNDTRTAPVAKSEITNVTVIIKNGQWPVKDQISVDACSLRRCMDA
Ga0180111_13876621	3300019244	Groundwater Sediment	MKTLIATATLTIMFLSAGAFAGNDIQMATAAKSQISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0184644_10998261	3300019269	Groundwater Sediment	HSLWRRHKMKTLIATATLTIMFLSVGAFAGNDIQMAKVAKSQISNVTVITKNGQWPVKGQTSFNACSVRRCLDA
Ga0190264_118999722	3300019377	Soil	MKTLIATATLTIMFLSAGAFAGSDIQMATLAKSPISKVTIITKNGQWPVKGQTSFDACSVRRCLDA
Ga0187893_103217942	3300019487	Microbial Mat On Rocks	MKTLIATATLTIMFLSAGAFAGNDIPMATLVKSPISKVTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0180118_12169591	3300020063	Groundwater Sediment	MKTLLATATLTIMFLSAGAFAGNDTRTAPVAKSEITNVTVIIKNGQWPVKGQISVDACSLRRCMDA
Ga0180113_10335911	3300020065	Groundwater Sediment	KMKTLIATATLTIMFLSAGAFAGNDIQMATVAKTPISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0180109_13498092	3300020067	Groundwater Sediment	PQSLEETKMKTVLATATLTIMFLSAGAFAGNDLPSAPVAKSQITNVTVISKNGQWPVKGQISLDACSVRRCLDA
Ga0184649_10830901	3300020068	Groundwater Sediment	TLTIMFLSAGAFAGNDTRTAPVAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA
Ga0210377_107749101	3300021090	Groundwater Sediment	MKTLLATATLTIMFLSAGAFAGNDTQTAPVAKFQITNVTVIAKNGQWPVKGQISFDACSIRRCMDA
Ga0193706_11230912	3300021339	Soil	MKTLIATATLTIMFLSAGAFAGNDLQMATLAKSQISNVTVITKNGQWPVKGQISFDACSVRRCLDA
Ga0222622_114134092	3300022756	Groundwater Sediment	MKTLIATATLTIMFLSAGAFAANDIKMATVAKSQISNVTVITKNGQWPMKGQTSLDACSVRRCLDA
Ga0209431_101927783	3300025313	Soil	MKTVIATATLTIMFLSAGAFAGNDTRTAPLAKSEITNVTVISKNGQWPVKGQISVDACSLRRCMDA
Ga0209341_101640301	3300025325	Soil	FLSAGAFAGNDTLTAPLAKSEITNVTVISKNGQWPVKGQISVDACSLRRCMDA
Ga0207709_111706841	3300025935	Miscanthus Rhizosphere	VLATATLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA
Ga0207689_118285601	3300025942	Miscanthus Rhizosphere	MKTVLATATLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA
Ga0207668_101398732	3300025972	Switchgrass Rhizosphere	MKTVLATATLTIMFLSAGAFAGNDTHTAPVAKSQITNVTVIAKNGQWPVKGQISLDACLVRRCLDA
Ga0209152_103912961	3300026325	Soil	MKTLIATATLTIMFLSAGAFAANDIQMATVAKSSISNVTVITKNGQWPMKGQTSLDACSVRRCLDA
Ga0209582_12686901	3300027724	Activated Sludge	MKTLIATATLTIMFLSVGAFAGNDIKMASGAKPQVSNVTVILKNGQWPVKGQTSFDACSVRRCLDA
Ga0209262_103975552	3300027841	Freshwater	MKTLIATATLTIMFLSAGAFAGNDIRMATVAKPQVTNVTVILKNGQWPVKGQTSFDACSVRRCLDA
Ga0209254_108006292	3300027897	Freshwater Lake Sediment	MKTLIATATLTVMFLSAGAFAGNDTRTATVAKPQVTNVTVIVKNGQWPVKGQISFDACALRRCLDA
Ga0209477_10918221	3300027959	Activated Sludge	HKMKTLIATATLTIMFLSAGAFAGNDIKMASGAKPQVSNVTVILKNGQWPVKGQTSFDACSVRRCLDA
Ga0308193_10406712	3300031096	Soil	MKTLIATATLTIMFLSVGAFAGNDIQMATVAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Ga0307501_102550201	3300031152	Soil	TLIATATLTIMFLSAGAFAGNDLQMATLAKSQISNVTVITKNGQWPMKGQTSLDACSVRRCLDA
Ga0307408_1017535651	3300031548	Rhizosphere	MKTLIATATLTIMFLSAGAFAGNDSKMETVAKSPISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Ga0307516_100826193	3300031730	Ectomycorrhiza	MKTLIATTTLTIMFLSAGAFAGNDIQMATVAKSQISNVTVITKNGQWPVKGQTSFDACSIRRCLDA
Ga0307405_101941863	3300031731	Rhizosphere	MKTLIATATLTIMFLSAGAFAGNDMPMATLAKSPISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Ga0315290_102637843	3300031834	Sediment	MSPKMKTLIATATLTIMFLSAGAFAGSDRNITQVAQTPISNITIITKNSQWPVATQISRDACNLRRCIAI
Ga0307412_106811382	3300031911	Rhizosphere	MKTLIATATLTVMFLSAGAFAGNDMTAAITAKSQISNVTVIAKNGHWPVKGQISFDACSVRRCLDA
Ga0315278_108808412	3300031997	Sediment	MSPKMKTLIATATLTIMFLSAGAFAGSDRNITQVAQTPISNITIITKSSQWPVATQISRDACNLRRCIAI
Ga0307416_1010988793	3300032002	Rhizosphere	LIATATLTIMFLSAGAFAGNDTKMETIAKSPISNVTVIIKNGQWPVKGQTSLDACSVRRCLDA
Ga0310902_103360801	3300032012	Soil	RWGNLFLTLKHRLWRRHKMKTLIATATLTIMFLSAGAFAGNDTKMETVAKSPISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0315292_100146403	3300032143	Sediment	MSPKMKTLITTATLTIMFLSAGAFAGSDRNITQVAQTPISNVTIITKNSQWPVATQISRDACNLRRCIAI
Ga0315287_100584032	3300032397	Sediment	MKTLIATATLTIMFLSAGAFAGSDRNITQVAQTPISNITIITKNSQWPVATQISRDACNLRRCIAI
Ga0315275_126000821	3300032401	Sediment	MSPKMKTLIATATLTIMFLSAGAFAGSDRNITQVAQTPISNITIITKNSQWPVATQISRDACNLRRCI
Ga0335397_100481313	3300032420	Freshwater	MKTLIATATLTIMFLSAGAFAGNDTHMATVAKAPISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Ga0364930_0091525_126_326	3300033814	Sediment	MKTVIATATLAVMFLSAGAFAGNDTQTASVAKSQITNVTVISKNGQWPVKGQISFDACSLRRCLDA
Ga0370486_191664_343_507	3300034126	Untreated Peat Soil	MFLSAGAFAGSDAQMATVAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCLDA
Ga0370489_0047951_433_645	3300034127	Untreated Peat Soil	MRLKMKTLIATATLTIMFLSAGAFAGSDTHSSQTVANPVVNVTVISKNSQWPVVGQMTTDACSIRRCIAI
Ga0370498_048851_229_429	3300034155	Untreated Peat Soil	MKTVIATATLTIMFLSAGAFAGNDTRTAPVAKSEITNVTVIIKNGQWPVKGQISVDACSLRRCMDA
Ga0364934_0063705_439_681	3300034178	Sediment	LFLTLNTMSLEETKMKTVIATATLAVMFLSAGAFAGNDTQTAPVAKSQITNVTVISKNGQWPVKGQISFDACSLRRCLDA
Ga0370499_0019500_371_571	3300034194	Untreated Peat Soil	MKTLIATATLTIMFLSAGAFAGNDIQMATVAKPQVTNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
Ga0370545_020037_382_582	3300034643	Soil	MKTLLATATLTIMFLSAGAFAGNNTQTAPMAKSQITNVTVIAKNGQWPVKGQISLDACSVRRCLDA
Ga0370545_088031_1_195	3300034643	Soil	TLIATATLTIMFLSVGAFAGNDTQMATVAKSQISNVTVITKNGQWPVKGQTSFDACSVRRCLDA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101471

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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