Sample 3300027478

Overview

Basic Information
IMG/M Taxon OID	3300027478 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0091530 \| Ga0207448
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-E (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	26320862
Sequencing Scaffolds	12
Novel Protein Genes	15
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga ossetica	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007280	Metagenome / Metatranscriptome	354	Y
F007380	Metagenome / Metatranscriptome	352	Y
F017713	Metagenome / Metatranscriptome	239	Y
F020065	Metagenome	226	Y
F029843	Metagenome / Metatranscriptome	187	Y
F032298	Metagenome / Metatranscriptome	180	Y
F041998	Metagenome / Metatranscriptome	159	Y
F043572	Metagenome / Metatranscriptome	156	N
F050433	Metagenome / Metatranscriptome	145	Y
F062991	Metagenome	130	Y
F063562	Metagenome	129	Y
F080311	Metagenome	115	Y
F090133	Metagenome	108	Y
F095768	Metagenome / Metatranscriptome	105	Y
F099596	Metagenome / Metatranscriptome	103	Y

Family

Category

Number of Sequences

3D Structure?

F007280

Metagenome / Metatranscriptome

354

F007380

Metagenome / Metatranscriptome

352

F017713

Metagenome / Metatranscriptome

239

F020065

Metagenome

226

F029843

Metagenome / Metatranscriptome

187

F032298

Metagenome / Metatranscriptome

180

F041998

Metagenome / Metatranscriptome

159

F043572

Metagenome / Metatranscriptome

156

F050433

Metagenome / Metatranscriptome

145

F062991

Metagenome

130

F063562

Metagenome

129

F080311

Metagenome

115

F090133

Metagenome

108

F095768

Metagenome / Metatranscriptome

105

F099596

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207448_100210	Not Available	1078	Open in IMG/M
Ga0207448_101239	Not Available	707	Open in IMG/M
Ga0207448_101260	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
Ga0207448_101552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	667	Open in IMG/M
Ga0207448_101740	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
Ga0207448_101777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga ossetica	643	Open in IMG/M
Ga0207448_101862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
Ga0207448_103527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
Ga0207448_103713	Not Available	530	Open in IMG/M
Ga0207448_104057	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
Ga0207448_104140	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
Ga0207448_104209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	512	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207448_100210

Not Available

1078

Open in IMG/M

Ga0207448_101239

Not Available

707

Open in IMG/M

Ga0207448_101260

All Organisms → cellular organisms → Bacteria

704

Open in IMG/M

Ga0207448_101552

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium

667

Open in IMG/M

Ga0207448_101740

All Organisms → cellular organisms → Bacteria

647

Open in IMG/M

Ga0207448_101777

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga ossetica

643

Open in IMG/M

Ga0207448_101862

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

635

Open in IMG/M

Ga0207448_103527

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

537

Open in IMG/M

Ga0207448_103713

Not Available

530

Open in IMG/M

Ga0207448_104057

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

517

Open in IMG/M

Ga0207448_104140

All Organisms → cellular organisms → Bacteria

514

Open in IMG/M

Ga0207448_104209

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

512

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207448_100210	Ga0207448_1002102	F099596	TKTDGMRRPVSGRDAIRSQVIDVLEAQKIKETGNEEG
Ga0207448_101239	Ga0207448_1012392	F062991	MRQTPTLLPPRLQPERDPLATIGVSAAPVVLEGRYRLLMRALWELRHSRRTRWGLGLGSAAVMLVLAFLAVRH
Ga0207448_101260	Ga0207448_1012601	F029843	MQVFHIHYRNTQGTLMRILNAISRRGIDMPYVQAEPLEHAHK
Ga0207448_101552	Ga0207448_1015521	F032298	MLADQLDYIVGVDPHRDSHSLAVVQIVSGAVVFESTI
Ga0207448_101552	Ga0207448_1015522	F050433	VPQLPSPPVAEGVVIRPERDADRRVIGDVVRAAFVGHPDEVASFVERIRASEHFI
Ga0207448_101740	Ga0207448_1017402	F063562	MNGNGELASFLQKLSEDRELQEAYIRDPAGTLRQAGLSEETIRAVLSRDLEQVKSVLEKEAPGIVYMMFMTIFEPPA
Ga0207448_101777	Ga0207448_1017772	F041998	LGARQHALELFDKGLPPLRVSPAEQFLGFLPRQRAAVQNSPDRLATAHQAEALAHPADQAAQRPARGWIRPFYGAGGRRALGGADHLAEFGFAARAKKGRRPPVRRNASASGPWAL
Ga0207448_101862	Ga0207448_1018621	F007380	AAVEAAAPDDPPRGYSAVFLGHPHPRVDESERIREKIPSLEVVFTKTPAGAAELDGLDLNEGEIAVYNTIDGRLNVRELTGRSELTEFEVTRILFQLLSARLIEPVHEEKSFRPIFLDVEDSPELLKVISTYNDMFGRLFEALERSVGEDQARDIFMTILQNAETDELWSGVFFDQFGRFDENMLIANISELPFEKRKAVLDEGLNTLLSV
Ga0207448_102085	Ga0207448_1020851	F007280	LTSPDTLDPLVVNYPARLPQQFGDLAIAVAAVLPGKLDNIGRETLLVVTTARDLALCRAMLPERRTGATLGDMQLRSDLLNAGTATRGA
Ga0207448_102221	Ga0207448_1022212	F095768	PFGHRLWPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTMFYEPPHDIRRSKAGA
Ga0207448_103527	Ga0207448_1035272	F020065	MKKSQIQQIKEGRAMHERTWSGRLQPLGPMVQLKTKNAVNLSTVPASSKEKYNGGNE
Ga0207448_103713	Ga0207448_1037131	F043572	ATVNAIDVENRVLTVTGPDGNTIVIKATPEILGRVRINEQITIRYADELATALRTINDAPPVNKANAIEREETGGMGMNAPTVAEQTWVEAAPQGETELNTVEVTATVANVEYGRRIVTFYGPNGTMRNVRIAPGVQGLDAIQQGDRVVMLLTRATAIDVKPL
Ga0207448_104057	Ga0207448_1040572	F090133	NLKTLVISYRYACDSTYSNCKDKEEFHVAKPYGLVKWQHQKLQADGTYAAPDNVSLFNRVVSGQTQVITTCF
Ga0207448_104140	Ga0207448_1041402	F017713	MKATDLQSEPNGDSAPLFGSWPKAYCVALGIFAFEIVLFYAFTVVFS
Ga0207448_104209	Ga0207448_1042092	F080311	GWNKAPAYMYHVGDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP

Scaffold ID

Protein ID

Family

Sequence

Ga0207448_100210

Ga0207448_1002102

F099596

TKTDGMRRPVSGRDAIRSQVIDVLEAQKIKETGNEEG

Ga0207448_101239

Ga0207448_1012392

F062991

MRQTPTLLPPRLQPERDPLATIGVSAAPVVLEGRYRLLMRALWELRHSRRTRWGLGLGSAAVMLVLAFLAVRH

Ga0207448_101260

Ga0207448_1012601

F029843

MQVFHIHYRNTQGTLMRILNAISRRGIDMPYVQAEPLEHAHK

Ga0207448_101552

Ga0207448_1015521

F032298

MLADQLDYIVGVDPHRDSHSLAVVQIVSGAVVFESTI

Ga0207448_101552

Ga0207448_1015522

F050433

VPQLPSPPVAEGVVIRPERDADRRVIGDVVRAAFVGHPDEVASFVERIRASEHFI

Ga0207448_101740

Ga0207448_1017402

F063562

MNGNGELASFLQKLSEDRELQEAYIRDPAGTLRQAGLSEETIRAVLSRDLEQVKSVLEKEAPGIVYMMFMTIFEPPA

Ga0207448_101777

Ga0207448_1017772

F041998

LGARQHALELFDKGLPPLRVSPAEQFLGFLPRQRAAVQNSPDRLATAHQAEALAHPADQAAQRPARGWIRPFYGAGGRRALGGADHLAEFGFAARAKKGRRPPVRRNASASGPWAL

Ga0207448_101862

Ga0207448_1018621

F007380

AAVEAAAPDDPPRGYSAVFLGHPHPRVDESERIREKIPSLEVVFTKTPAGAAELDGLDLNEGEIAVYNTIDGRLNVRELTGRSELTEFEVTRILFQLLSARLIEPVHEEKSFRPIFLDVEDSPELLKVISTYNDMFGRLFEALERSVGEDQARDIFMTILQNAETDELWSGVFFDQFGRFDENMLIANISELPFEKRKAVLDEGLNTLLSV

Ga0207448_102085

Ga0207448_1020851

F007280

LTSPDTLDPLVVNYPARLPQQFGDLAIAVAAVLPGKLDNIGRETLLVVTTARDLALCRAMLPERRTGATLGDMQLRSDLLNAGTATRGA

Ga0207448_102221

Ga0207448_1022212

F095768

PFGHRLWPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTMFYEPPHDIRRSKAGA

Ga0207448_103527

Ga0207448_1035272

F020065

MKKSQIQQIKEGRAMHERTWSGRLQPLGPMVQLKTKNAVNLSTVPASSKEKYNGGNE

Ga0207448_103713

Ga0207448_1037131

F043572

ATVNAIDVENRVLTVTGPDGNTIVIKATPEILGRVRINEQITIRYADELATALRTINDAPPVNKANAIEREETGGMGMNAPTVAEQTWVEAAPQGETELNTVEVTATVANVEYGRRIVTFYGPNGTMRNVRIAPGVQGLDAIQQGDRVVMLLTRATAIDVKPL

Ga0207448_104057

Ga0207448_1040572

F090133

NLKTLVISYRYACDSTYSNCKDKEEFHVAKPYGLVKWQHQKLQADGTYAAPDNVSLFNRVVSGQTQVITTCF

Ga0207448_104140

Ga0207448_1041402

F017713

MKATDLQSEPNGDSAPLFGSWPKAYCVALGIFAFEIVLFYAFTVVFS

Ga0207448_104209

Ga0207448_1042092

F080311

GWNKAPAYMYHVGDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027478: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-E (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences