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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F095768 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 105 |
| Average Sequence Length | 55 residues |
| Representative Sequence | AQVSWKPCICAAAREGAERGRGMGHVWVTCRTCHDQLRQTTFYEPPHDIRHPKAGA |
| Number of Associated Samples | 102 |
| Number of Associated Scaffolds | 105 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 101 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.31 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (99.048 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.238 % of family members) |
| Environment Ontology (ENVO) | Unclassified (20.952 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.524 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 28.57% β-sheet: 0.00% Coil/Unstructured: 71.43% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 105 Family Scaffolds |
|---|---|---|
| PF08240 | ADH_N | 68.57 |
| PF07728 | AAA_5 | 9.52 |
| PF12697 | Abhydrolase_6 | 1.90 |
| PF00067 | p450 | 1.90 |
| PF04149 | DUF397 | 0.95 |
| PF08044 | DUF1707 | 0.95 |
| PF07690 | MFS_1 | 0.95 |
| PF00004 | AAA | 0.95 |
| PF13519 | VWA_2 | 0.95 |
| PF03403 | PAF-AH_p_II | 0.95 |
| PF05221 | AdoHcyase | 0.95 |
| PF02880 | PGM_PMM_III | 0.95 |
| PF13193 | AMP-binding_C | 0.95 |
| PF13462 | Thioredoxin_4 | 0.95 |
| PF02545 | Maf | 0.95 |
| PF00561 | Abhydrolase_1 | 0.95 |
| COG ID | Name | Functional Category | % Frequency in 105 Family Scaffolds |
|---|---|---|---|
| COG2124 | Cytochrome P450 | Defense mechanisms [V] | 1.90 |
| COG0033 | Phosphoglucomutase/phosphomannomutase | Carbohydrate transport and metabolism [G] | 0.95 |
| COG0424 | 7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily | Secondary metabolites biosynthesis, transport and catabolism [Q] | 0.95 |
| COG0499 | S-adenosylhomocysteine hydrolase | Coenzyme transport and metabolism [H] | 0.95 |
| COG1109 | Phosphomannomutase | Carbohydrate transport and metabolism [G] | 0.95 |
| COG4188 | Predicted dienelactone hydrolase | General function prediction only [R] | 0.95 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 99.05 % |
| All Organisms | root | All Organisms | 0.95 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300014492|Ga0182013_10000044 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 132583 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 15.24% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 9.52% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 6.67% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 5.71% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 4.76% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.76% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.76% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 3.81% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 2.86% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 2.86% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 2.86% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 1.90% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.90% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 1.90% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 1.90% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 1.90% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.90% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 1.90% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.95% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 0.95% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.95% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.95% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.95% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.95% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.95% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.95% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.95% |
| Permafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil | 0.95% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.95% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.95% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.95% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.95% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.95% |
| Exposed Rock | Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock | 0.95% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.95% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.95% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.95% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.95% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.95% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2166559006 | Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled | Environmental | Open in IMG/M |
| 2170459012 | Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass | Environmental | Open in IMG/M |
| 2199352025 | Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL | Environmental | Open in IMG/M |
| 3300001356 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 | Environmental | Open in IMG/M |
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300001989 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 | Host-Associated | Open in IMG/M |
| 3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
| 3300003659 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Host-Associated | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004153 | Grasslands soil microbial communities from Hopland, California, USA (version 2) | Environmental | Open in IMG/M |
| 3300005165 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMC | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
| 3300005560 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119 | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005598 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Host-Associated | Open in IMG/M |
| 3300005952 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 | Environmental | Open in IMG/M |
| 3300005995 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 | Environmental | Open in IMG/M |
| 3300006052 | Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006606 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300006953 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
| 3300011106 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2) | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012210 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012476 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610 | Host-Associated | Open in IMG/M |
| 3300012481 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610 | Host-Associated | Open in IMG/M |
| 3300012503 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R | Host-Associated | Open in IMG/M |
| 3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012925 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012987 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG | Environmental | Open in IMG/M |
| 3300014150 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300014166 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015 | Environmental | Open in IMG/M |
| 3300014492 | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG | Environmental | Open in IMG/M |
| 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Host-Associated | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300018035 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10 | Environmental | Open in IMG/M |
| 3300018046 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10 | Environmental | Open in IMG/M |
| 3300018064 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG | Environmental | Open in IMG/M |
| 3300019361 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) | Environmental | Open in IMG/M |
| 3300021374 | Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08 | Environmental | Open in IMG/M |
| 3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300024249 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17 | Environmental | Open in IMG/M |
| 3300024275 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15 | Environmental | Open in IMG/M |
| 3300024286 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28 | Environmental | Open in IMG/M |
| 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026322 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes) | Environmental | Open in IMG/M |
| 3300026345 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A | Environmental | Open in IMG/M |
| 3300026552 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes) | Environmental | Open in IMG/M |
| 3300027119 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027478 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-E (SPAdes) | Environmental | Open in IMG/M |
| 3300027523 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes) | Environmental | Open in IMG/M |
| 3300027817 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300028789 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3 | Environmental | Open in IMG/M |
| 3300028801 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3 | Environmental | Open in IMG/M |
| 3300028877 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3 | Environmental | Open in IMG/M |
| 3300028879 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3 | Environmental | Open in IMG/M |
| 3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030057 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1 | Environmental | Open in IMG/M |
| 3300030677 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3 | Environmental | Open in IMG/M |
| 3300030739 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3 | Environmental | Open in IMG/M |
| 3300031198 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031549 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24 | Environmental | Open in IMG/M |
| 3300031572 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031779 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22 | Environmental | Open in IMG/M |
| 3300031945 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
| 3300032065 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20 | Environmental | Open in IMG/M |
| 3300032090 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22 | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
| 3300033818 | Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M | Environmental | Open in IMG/M |
| 3300034163 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| FI_00096810 | 2166559006 | Grass Soil | VAGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRRSKAGA |
| N56_00616600 | 2170459012 | Grass Soil | APAREGAERGRGMGHVWVTCRACHDQLRQTMFYEPPHDIRRSKAGA |
| deepsgr_01947680 | 2199352025 | Soil | LARGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRRSKAGA |
| JGI12269J14319_100992262 | 3300001356 | Peatlands Soil | MGQVGWRPCICAPALEASERGRGMGHLWVSCNACHEVSRRTTFYEPPHDAGRGPRREQDG |
| JGI12635J15846_104713762 | 3300001593 | Forest Soil | MARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQFRDTTFYEPPHDIRDPQAGTQGPSGI* |
| JGI24739J22299_101295351 | 3300001989 | Corn Rhizosphere | CICAAAREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA* |
| JGIcombinedJ51221_101350811 | 3300003505 | Forest Soil | CICAPARERAEHGRGMGXVWVSCEACHEQLRDTTFXEPPHDIRHPQAGP* |
| JGI25404J52841_100076413 | 3300003659 | Tabebuia Heterophylla Rhizosphere | WPGGAQVSWKPCICAAAREGAEQGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRRSKAGA |
| Ga0062389_1002517141 | 3300004092 | Bog Forest Soil | ARVSWKPCVCAAARERAELGRGMGHVWVSCETCHEQLWDTTFYEPPHDVRHEQTRR* |
| Ga0062389_1009315601 | 3300004092 | Bog Forest Soil | MARVSWKPCICAAARERAELGRGMGHVWVSCETCHEQLWETTFYEPPH |
| Ga0063455_1000868592 | 3300004153 | Soil | PGGAQVSWKPCICAPAREGAERGRGLGHVWVSCRACRDQRRQTMFYEPPHDIRHHQAGV* |
| Ga0066869_100901412 | 3300005165 | Soil | GAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTMFYEPPHDIRRSKAGA* |
| Ga0070690_1005879771 | 3300005330 | Switchgrass Rhizosphere | ICAAAREGAGRGRGMGHVWVTCRACHDQLRQTTFYEPPHDITRSKAGA* |
| Ga0070682_1008056621 | 3300005337 | Corn Rhizosphere | HRLWPGGAQVSWKPCICAAAREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA* |
| Ga0070668_1006749962 | 3300005347 | Switchgrass Rhizosphere | CPFGHRLWPGGAQVSWKPCICAAAREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA* |
| Ga0070733_101208023 | 3300005541 | Surface Soil | MGQVGWRPCICAPAREAGERGRGMGHLWVSCNACHDQSRRTTFYEPPHDAGHGPRRAQDG |
| Ga0066670_107811171 | 3300005560 | Soil | PGGAQVSWKPCICTAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRQPKAGA* |
| Ga0068855_1011586792 | 3300005563 | Corn Rhizosphere | GAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQFRQTTFYEPPHDIRHPKAGA* |
| Ga0066706_100395881 | 3300005598 | Soil | KPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRPPKAGA* |
| Ga0070762_101500802 | 3300005602 | Soil | MARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHPQAGP* |
| Ga0070763_108504641 | 3300005610 | Soil | KPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRHPKAGA* |
| Ga0066903_1057065581 | 3300005764 | Tropical Forest Soil | CPFGHQLWPGGAQVSWKPCICAPAREGAERGRGMGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV* |
| Ga0081455_105682991 | 3300005937 | Tabebuia Heterophylla Rhizosphere | EGAEQGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRRSKAGA* |
| Ga0080026_102738341 | 3300005952 | Permafrost Soil | MARVSWKPCICAAAKERAGLGRGMGHIWVSCETCHQQFRDTTFYEPPHD |
| Ga0066790_100093763 | 3300005995 | Soil | MARVSWKPCICAAARERAGLGRGMGHVWVSCETCHQQLWDTAFYEPPHDIRHS* |
| Ga0075029_1008943811 | 3300006052 | Watersheds | GRAQVSWKPCVCAPAREGAERGRGMGHVWVSCRTCHDQLRQTTFYEPPHDIRHRQACP* |
| Ga0070765_1021976642 | 3300006176 | Soil | RVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQFRDTTFYEPPHDTRDPQAGTQGPSGI* |
| Ga0074062_100254081 | 3300006606 | Soil | VSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDITRSKAGA* |
| Ga0066659_116325811 | 3300006797 | Soil | GAQVSWKPCICAAAREGAERGRGMGHVWVTCRTCHDQLRQTTFYEPPHDIRHPKAGA* |
| Ga0075434_1008310231 | 3300006871 | Populus Rhizosphere | LWPGGAQVSWKPCICGPAREGAERGRGLGHVQVSCRTCHDQLRQTAFYEPPHDIRHHQAGV* |
| Ga0073928_101684163 | 3300006893 | Iron-Sulfur Acid Spring | WPGQARVGWKPCICAAAREGAERGRGMGHLLVSCQTCHAQLRDATFYEPPHDIRCRQAGPWLC* |
| Ga0074063_100638291 | 3300006953 | Soil | AQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDITRSKAGA* |
| Ga0105242_102369853 | 3300009176 | Miscanthus Rhizosphere | WPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRRSKAGA |
| Ga0116214_13597601 | 3300009520 | Peatlands Soil | MGQVGWRPCICAPALEASERGRGMGHIWVSCNACHDESRRTTFYEPPHDAGR |
| Ga0105249_100149901 | 3300009553 | Switchgrass Rhizosphere | AREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA* |
| Ga0126370_120787051 | 3300010358 | Tropical Forest Soil | GAQVIWKRCLCSPARVSAERDRGMGDVWVSCRACHEQLRQTTFYEPPHDIRHPQAGA* |
| Ga0151489_16810872 | 3300011106 | Soil | KPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRHSQAGA* |
| Ga0150983_166928381 | 3300011120 | Forest Soil | HRLWPGMARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRPPSQAGP* |
| Ga0137388_104762052 | 3300012189 | Vadose Zone Soil | REGAERGRGMGHVWVSCRTCHDQLRQTTFYEPPHDIRHSQACP* |
| Ga0137378_114058882 | 3300012210 | Vadose Zone Soil | AQVSWKPCICAAAREGAERGRGMGHVWVSCRTCHDQLRQTTFYEPPHDIRHHQACP* |
| Ga0137384_107702552 | 3300012357 | Vadose Zone Soil | AQVSWKPCICAAAREGAEQGRGMGHVWVTCRACHDQFRQTMFYEPPHDIRRSEAGA* |
| Ga0137360_101237923 | 3300012361 | Vadose Zone Soil | AQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQFRQTTFYEPPHDIRHPKAGA* |
| Ga0157344_10251211 | 3300012476 | Arabidopsis Rhizosphere | RGRGMGHVRVTCRACHDQLRQTTFYEPPHDVTRSKAGA* |
| Ga0157320_10007581 | 3300012481 | Arabidopsis Rhizosphere | AQVSWKPCICAAAREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA* |
| Ga0157313_10310621 | 3300012503 | Arabidopsis Rhizosphere | GAERGRGMGHVWVTCRACHDQLRQTMFYEPPHDIRRSKAGA* |
| Ga0137398_102008391 | 3300012683 | Vadose Zone Soil | ERGRGMGHVWVTCRACHDQLRQTMFYEPPHDIRRSKAGA* |
| Ga0137359_112165752 | 3300012923 | Vadose Zone Soil | PGMAQVSWKPCICAPAREGAERGRGMGHVWVSCGTCHDLLWQTTFYEPPHDIRHVQAGPWRA* |
| Ga0137419_107891101 | 3300012925 | Vadose Zone Soil | ICAAAREGAERGRGMGHVWVSCRTCHDQLRQTTFYEPPHDIRHPKAGA* |
| Ga0164307_115884022 | 3300012987 | Soil | AAREGAERGRGMGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV* |
| Ga0134081_100604972 | 3300014150 | Grasslands Soil | ELWPGGAQVSWKPCICTAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIGHHQAGA* |
| Ga0134079_102948272 | 3300014166 | Grasslands Soil | AQVSWKPGICTAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRHSKAGA* |
| Ga0182013_1000004470 | 3300014492 | Bog | MARVSWQPCVCAAARERAELGRGMGHVWVSCETCHSQLWETTFYEPPHDIRHAKQI* |
| Ga0182008_108218932 | 3300014497 | Rhizosphere | GAERGRGMGHVWVTCRACHDHLRQTMFYEPPHDIRRFKAGA* |
| Ga0182036_117880241 | 3300016270 | Soil | MAQVGWKPCICTPAREAAERGRGMGHLLVFCNTCHEQLWQTTFYQPPHDINHH |
| Ga0182038_103379622 | 3300016445 | Soil | LWPGGAQVSWKPCICAAAREGAERGRGLGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAG |
| Ga0187817_100094951 | 3300017955 | Freshwater Sediment | MGQVGWRPCICAPALEASERGRGMGHLWVSCNACHDQSRRTTFYEPPHDAGRG |
| Ga0187875_101017263 | 3300018035 | Peatland | MARVSWQPCVCAPAREAAAGEKAGLGRGLGHVGVSCETCHQQFWDTTFYEPPH |
| Ga0187851_104986641 | 3300018046 | Peatland | GRARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHPRAGP |
| Ga0187773_106924592 | 3300018064 | Tropical Peatland | GAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0173482_101046291 | 3300019361 | Soil | CAAAREGAEQGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRRSKAGA |
| Ga0213881_102046581 | 3300021374 | Exposed Rock | APAREGAERGRGMGHVRVSCRTCHDQLRQTTFYEPPHDIRHHQAGV |
| Ga0210398_101731391 | 3300021477 | Soil | GMGQVGWRPCICAPAREASERGRGMGHLWVSCNACHDQARRTTFYEPPHDDGGGCQNVAR |
| Ga0210409_114593282 | 3300021559 | Soil | AQVSWKPCICAAAREGAERGRGMGHVWVTCRTCHDQLRQTTFYEPPHDIRHPKAGA |
| Ga0224712_106748132 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | CPFGHRLWPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRTCHDQLRQTTFYEPPHDIRRSKAGA |
| Ga0247676_10034544 | 3300024249 | Soil | CAAAREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA |
| Ga0247674_10504122 | 3300024275 | Soil | ICAAAREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA |
| Ga0247687_10322082 | 3300024286 | Soil | GHRLWPGGAQVSWKPCICAAAREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA |
| Ga0207647_100620441 | 3300025904 | Corn Rhizosphere | QVSWKPCICAAAREGAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA |
| Ga0209687_11001382 | 3300026322 | Soil | WPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIGHHQAGA |
| Ga0257148_10060971 | 3300026345 | Soil | CPFGHVLWPGGAQVSWKPCICTAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDITRSKAGA |
| Ga0209577_107854021 | 3300026552 | Soil | AAAREGAERGRGMGHVWVTCRACHDQFRQTTFYEPPHDIRHPKAGA |
| Ga0209522_10044792 | 3300027119 | Forest Soil | GAERGRGMGHVRVTCRACHDQLRQTTFYEPPHDITRSKAGA |
| Ga0207448_1022212 | 3300027478 | Soil | PFGHRLWPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTMFYEPPHDIRRSKAGA |
| Ga0208890_10845262 | 3300027523 | Soil | HRLWPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTMFYEPPHDIRRSKAGA |
| Ga0209112_100107182 | 3300027817 | Forest Soil | MAQVSWKPCICAAAREGAERGRGMGHVWLTCRACHEEFRQTAFYEPPHDISHQPTRP |
| Ga0302232_100717911 | 3300028789 | Palsa | CPFGHRLWPGMARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHPQAGP |
| Ga0302226_101854222 | 3300028801 | Palsa | FGHQLWPGMAQVSWKPCICGPARERAEAGRGMGHVWVSCEACHEQFRDTTFYEPPHDIRHEQASF |
| Ga0302235_102580922 | 3300028877 | Palsa | RLWPGMARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHPQAGP |
| Ga0302229_100406414 | 3300028879 | Palsa | MARVSWKPCICTPAREGAGHGRGMGHVWVSCETCHEQFWDTTFYQPPHD |
| Ga0311340_109341261 | 3300029943 | Palsa | FGHWLWPGRARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHPRAGP |
| Ga0311338_118109921 | 3300030007 | Palsa | PGMARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHPRAGP |
| Ga0302176_101925962 | 3300030057 | Palsa | MARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPP |
| Ga0302317_100703843 | 3300030677 | Palsa | ICAPARERAGHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHSQAGP |
| Ga0302311_100134972 | 3300030739 | Palsa | MARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHPQAGL |
| Ga0307500_102317881 | 3300031198 | Soil | ICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDITRSKAGA |
| Ga0302325_105355781 | 3300031234 | Palsa | RVSWKPCICAPARERAGHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHSQAGP |
| Ga0318534_104267601 | 3300031544 | Soil | ICAAAREGAERGRGMGHVWVTCRTCHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0318571_102471341 | 3300031549 | Soil | YRAAAREGAERGRGLGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0318515_105737382 | 3300031572 | Soil | KPCICAAAREGAERGRGLGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0310686_1119807041 | 3300031708 | Soil | LWPGRALVGWKPCLCAGAREGAERGRGMGHLWVSCQSCHDQFWDTTFYEPPHDIRHRPDSPW |
| Ga0310686_1178616673 | 3300031708 | Soil | WKPCVCAAAREGAERGRGMGHVWVSCRTCHDQLRQTTFYEPPHDIRHRPAGPQAPGHVKI |
| Ga0318546_107740302 | 3300031771 | Soil | QVSWKPCICPAAREGAERGRGMGHVRVSCRACHDQLRQTTFYEPPHDIRHRPAGPGDPGHVKI |
| Ga0318566_100809283 | 3300031779 | Soil | ICAPAREGAERGRGMGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0318566_105146412 | 3300031779 | Soil | VCPFGHRLWPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRTCHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0310913_104102591 | 3300031945 | Soil | HRLWPGGAQVSWKPCICAAAREGAERGRGLGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0310910_104721011 | 3300031946 | Soil | AREGAERGRGLGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0307479_111451672 | 3300031962 | Hardwood Forest Soil | PFGHELWPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRACHDQLRQTTFYEPPHDIRPPKAGA |
| Ga0318513_106550102 | 3300032065 | Soil | CPFGHRLWPGGAQVSWKPCICAAAREGAERGRGMGHVWVTCRTCHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0318518_100138691 | 3300032090 | Soil | WPGLALVGWKPCICAPAREGAARGRGMGHLWVSCQTCHAQLCDATFYEPPHDIRCHQTGPWPG |
| Ga0335085_116563441 | 3300032770 | Soil | VSWKPCICGPAREAAARGRGMGHAMITCTACHDQLRQTTFYEPAHDSG |
| Ga0335079_103963181 | 3300032783 | Soil | CPAAREGAERGRGMGHVWVTCRACHDQLRQTAFYEPPHDIRHHQAGV |
| Ga0335078_100454075 | 3300032805 | Soil | VGWKPCLCAGAREGAERGRGMGHLWVSCQSCHDQFWDTTFYEPPHDIGHRPDSPW |
| Ga0335075_101105312 | 3300032896 | Soil | MAQVSWKPCICAAAREGAEQGRGMGHVWLTCRACHEQFRQTAFYEPPHDISHRPTRP |
| Ga0334804_000393_10418_10588 | 3300033818 | Soil | MARVSWQPCVCAAARERAELGRGMGHVWVSCETCHSQLWETTFYEPPHDIRHAKQI |
| Ga0370515_0024582_2560_2748 | 3300034163 | Untreated Peat Soil | RLWPGMARVSWKPCICAPARERAEHGRGMGHVWVSCEACHEQLRDTTFYEPPHDIRHPQAGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |