3300027466: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-B (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027466
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091527 | Ga0207484
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-B (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30662075
• Sequencing Scaffolds: 28
• Novel Protein Genes: 33
• Associated Families: 33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1
All Organisms → cellular organisms → Bacteria	4
Not Available	7
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium → Roseimicrobium gellanilyticum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000072	Metagenome / Metatranscriptome	2651	Y
F000174	Metagenome / Metatranscriptome	1764	Y
F000192	Metagenome / Metatranscriptome	1666	Y
F002464	Metagenome / Metatranscriptome	557	Y
F002713	Metagenome / Metatranscriptome	535	Y
F003878	Metagenome / Metatranscriptome	464	Y
F004533	Metagenome / Metatranscriptome	434	Y
F005548	Metagenome / Metatranscriptome	397	Y
F005794	Metagenome / Metatranscriptome	390	Y
F006089	Metagenome / Metatranscriptome	382	Y
F016792	Metagenome / Metatranscriptome	244	Y
F017035	Metagenome / Metatranscriptome	243	Y
F019694	Metagenome / Metatranscriptome	228	Y
F022301	Metagenome / Metatranscriptome	215	Y
F023432	Metagenome / Metatranscriptome	210	Y
F025086	Metagenome / Metatranscriptome	203	Y
F029183	Metagenome / Metatranscriptome	189	Y
F038699	Metagenome / Metatranscriptome	165	Y
F041464	Metagenome / Metatranscriptome	160	Y
F048215	Metagenome	148	Y
F051778	Metagenome / Metatranscriptome	143	Y
F052151	Metagenome / Metatranscriptome	143	Y
F052174	Metagenome / Metatranscriptome	143	Y
F052781	Metagenome / Metatranscriptome	142	Y
F060367	Metagenome / Metatranscriptome	133	Y
F070591	Metagenome / Metatranscriptome	123	Y
F071570	Metagenome / Metatranscriptome	122	N
F072149	Metagenome / Metatranscriptome	121	Y
F075361	Metagenome / Metatranscriptome	119	Y
F084801	Metagenome / Metatranscriptome	112	Y
F095660	Metagenome	105	Y
F099262	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207484_100287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1629
Ga0207484_100394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1491
Ga0207484_100427	All Organisms → cellular organisms → Bacteria	1466
Ga0207484_100849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1188
Ga0207484_100958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1142
Ga0207484_101134	All Organisms → cellular organisms → Bacteria	1075
Ga0207484_101380	Not Available	1000
Ga0207484_101492	All Organisms → cellular organisms → Bacteria	970
Ga0207484_101733	Not Available	918
Ga0207484_102754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Roseimicrobium → Roseimicrobium gellanilyticum	762
Ga0207484_103140	Not Available	721
Ga0207484_103166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	718
Ga0207484_103273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709
Ga0207484_103746	All Organisms → cellular organisms → Bacteria	672
Ga0207484_104953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598
Ga0207484_105449	Not Available	576
Ga0207484_105655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568
Ga0207484_105900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558
Ga0207484_106399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540
Ga0207484_106425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540
Ga0207484_106829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528
Ga0207484_106920	Not Available	525
Ga0207484_107213	Not Available	517
Ga0207484_107470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	510
Ga0207484_107489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	509
Ga0207484_107722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504
Ga0207484_107746	Not Available	503
Ga0207484_107866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207484_100287	Ga0207484_1002874	F075361	MRLVTFESSAKQSRIGAITANDRIIDLNSACALYLRDVESESAFYRLADA
Ga0207484_100394	Ga0207484_1003941	F002713	MVEIHVAVTDPTRVHGLMRRLGRLFDRSAVSYDGARREVRVRSEWESRSVVEVIDAVQSWLEADGLGSARLSVGQRSYT
Ga0207484_100427	Ga0207484_1004271	F017035	MNELESGLNKVLEEHQHESGLHVIGGRRRLVDRLMQFFEEFKPEAPE
Ga0207484_100849	Ga0207484_1008491	F052781	VNPIRTCFCFTIFCALSVSALAQARPLPGPDVQQIYDRLLPQIEKIPAFDHHAHPGFAEDSDVDAMAAPPGSVPFRERDSNPELVAAAKALFDYPYNDLSPEHSKWL
Ga0207484_100958	Ga0207484_1009581	F006089	MQYSRTHIYIAVAAGALIVLTFFGYLFWLNNQGPVLAKSDDHDPLSGTPNSISLNPLRDRTSEHAASKFIRGMRDGQCKEQLAAWSKDYRRKYAAFIC
Ga0207484_101134	Ga0207484_1011342	F016792	MEYPVREPCPPKCCYPDMPRSNPTCEASGTTASIWKHQSGSGPAEDGRLNARERPWLRSVIRNRPKVLTGRSQKGTRVGSSAATTDDGGPKTRRTIGRNLPIRLSTLDNRVSPIRPTVATRWYPDRKEGHDGGGRGTAEQAKAAL
Ga0207484_101380	Ga0207484_1013801	F023432	MTRSAKILICGGIALAAFGMLYGLHYAVFIEHQTLD
Ga0207484_101492	Ga0207484_1014921	F002464	ILLVSAALGYSLTFALIARVEPDAWVAASFGVIPFAIGLGFFVDSALVRRDARA
Ga0207484_101733	Ga0207484_1017331	F052174	MKATVFLGGGRITTALIAGLRLAHYPTPIVVHDRHPELLRRLRRQYS
Ga0207484_101865	Ga0207484_1018652	F000036	MACDSTEQMRAEYGPFHTRMEAEIEARKLGFEYLLRYEHIVGKNDEIQEVRSIFIELQEGSQTPRLPVKLHTRCASCGESATHDEPWRAEVWADIHEFEHSRHRVRLFEQTRAAGLKEIADWRSQ
Ga0207484_102754	Ga0207484_1027541	F025086	MKTPLYAALDLHSRYSVLGSMDHEGNTQPKMRFATSALLLRQNIQALRQKKRPVYLTMEAGAFTRWASALVRPLVERLIICEPRHNRLINSNPTKSDEADVDGMCLLLRLSKLKEVWMGQDRTREIYRALVYELLNWRDAQRELKALIKARYRGWGVLRLHGIKVFSAKGR
Ga0207484_103140	Ga0207484_1031402	F084801	VATACLASLAILAGGLAALYGLDWYKNRKHNRKSTRDVKEGYTDKEPLAERLA
Ga0207484_103166	Ga0207484_1031661	F041464	LQAGYVPAEIAPELTGDEQAVSLWEFRGEDGRRIGLRILLAPAEAWVQEPR
Ga0207484_103273	Ga0207484_1032731	F022301	LLDQPVLTPIQITNGPDFDAAQPEKTRFAYFTDADNIACYFRPHYAFVKVPGDSMKFQCWHMASNHAFYSSTGETIPVEDVKVEVTKKKSGEKEAKLFPREDGQNQHPIKAEHFKVKYLKPPYPGHDPRFNEVFTTVAASRIMWLLGFPADHVYSAASASCIGCGDDPFGKKLADNTASLKDAPVIFKVVSAERELPWDEINPEDDETWSWTDAAKFYSDGEWTHQQKVEYDAYRL
Ga0207484_103380	Ga0207484_1033801	F000174	FPNGILLSGGQKMKNVYEVLRQKELELARLEKEVEALRVAAPLLSDESSAELSASKPTLTTNTPAQQPIRIPQPAATATPAVQTARAAGWEDSAKRWP
Ga0207484_103746	Ga0207484_1037461	F071570	MRTCAGYPPDRCPGQTVTLPVELAAVPATRTFRPGVSPALPFPYAAEDGPVSTRPVGVGVGGKEHGASRYRGTARQLIRRGLVR
Ga0207484_104953	Ga0207484_1049532	F003878	VMTTLAVIAGLVFSIAISLLVEEFIFGEVFRLFFAQQAVERVRARYAAR
Ga0207484_105377	Ga0207484_1053771	F000072	MDAEQTIAEIEWLERIFAAPDSRPLNQSDLSAANRRHDEMNAQSPWFRLWQRYGICCRS
Ga0207484_105449	Ga0207484_1054492	F004533	MTGFAGGEAPEGAAELGYEQMLEALLTLLGRPVLVLFSGSGGLPFIAGIVSGRLDRGELDERLQDVLLRGDDAEVETLFFHVGTRESGFVIRPDEFERSFWHSDGHLVVHLGSCAVSVLARGELGQALER
Ga0207484_105602	Ga0207484_1056021	F038699	MGVGYSRRAVTATTPDLDAEREIDLARWRRAVVRLWWLPVAGLIVGAIGGGIYSLRGSSEYKAAALISLGQPVSPGGSLVNGFYTNPRAIALITSSASAQSDAEEQA
Ga0207484_105655	Ga0207484_1056552	F019694	HRVSEKLGVFAFAIAILVVIVGGAFAAGYLIGRILL
Ga0207484_105666	Ga0207484_1056661	F000192	LYFDKQEDALLFTLAASSVMSAEGPLRGTKAADKVADEICKATRITTEGVLS
Ga0207484_105900	Ga0207484_1059001	F072149	MAGKADFTAQEWESLQQGVTGAGLLVSLSDRGFFDTFKEAGALGKHTAQAKQSNSSQLVRELADIHGTGFGLTSSPGAVETETLAALRSAKTALASKAPDELDSYRQFVVEVAQSVADAA
Ga0207484_106399	Ga0207484_1063991	F029183	TMLEQIEELLGAEEPTLARMEDTLTEGYAQALALEAERWRLERRIGEVARNGQTDVEELRSLGTRLSHADGELEELRTLLGRLHERARLVRKAS
Ga0207484_106425	Ga0207484_1064251	F048215	MVAPSQYGPPLLAVGVAGVGLTTTLVVPAAEVQPFTVTVTEYVPASAVVALAFVGFCSAELKPFGPVHAYVAPETVGVESVIVAPAQYGPVFDAVGVAGIALTTTEVVPAAEGQLLTVTVTEYVPPSAVVAFAFVGFCNADEKPFGPVHAYVAPLTVGVESVIVAPAQYGPVFDA
Ga0207484_106829	Ga0207484_1068292	F005794	GPRGYSGNCLIVLDDRKERLERLFEWVEYVGSSDNPYALEREIPVYICRGAKFGSLATLWPRLKKWR
Ga0207484_106920	Ga0207484_1069201	F070591	MWVRVATFEGVDAKKATEIVNDRMASGEMPLPEGMQSVLVLDDTASKKRKFFAFF
Ga0207484_107213	Ga0207484_1072131	F052151	MIPPDNRASPEACDADKQCLHGPCFQVQLDGTRPRQAHQRANACAYHVADVIEALRRWAAEHGVVDGALTILAIEPAAGGRQP
Ga0207484_107470	Ga0207484_1074702	F099262	KIAQLKKRFRFVLVNCEDMRKWHGTSKDWSNASHVNRANMRRELRYIVAHSDGALR
Ga0207484_107489	Ga0207484_1074891	F060367	GGFINSGIYASVTHNAGATWSAPRLISGALDEAFVSVPTVTSDGRIFVSFMNTDDLTTGRDTYYTVEVDPATGARIAGPFPVGLVIDGSTDFPFAFGRPTYQDSVFRTWSAGNITADPTNPAHLAVVWADMRNSELPAPTDPYAAVTNSDVVVSESTDYGRTWSDPLAI
Ga0207484_107722	Ga0207484_1077221	F095660	VNPGDCDVHMEISQVASKTAPRVVIETPIDSEYCSARRTLQSQLKQKGFQLDIQHGGDLAQPLPVSVLGLPFEDFEHGRGSPQVSTVWEIHPAIVTLL
Ga0207484_107746	Ga0207484_1077461	F051778	PGPQCGGTLWKVMTLSDTAKQSVTWAPTATSIPGISKLTAPARITTARSNSFLKHVWSLDKTVIERYRMASNGEIVLELFDINTQTYMNAYLEASSCLPTAARGRGQMLTARNNFLSGCPAPTKDWQMLGAQANIAGVGFFNPVKTTMGALKNGAELRPLVSMNITQ
Ga0207484_107866	Ga0207484_1078661	F005548	LRWFLSLFGRRPQREASPIREADAYARSYGERSGEIVSVARMEPQRIPRRTGDMGGELLRRAFESKLDARGKAAT