Metagenome / Metatranscriptome Family F099262

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099262
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	49 residues
Representative Sequence	KRFRFVFVDAQDIRTWGGTAYDWSNATHVNRANMRRMLRYIVAHSDGALR
Number of Associated Samples	91
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.06 %
% of genes from short scaffolds (< 2000 bps)	97.09 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.146 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.534 % of family members)
Environment Ontology (ENVO)	Unclassified (23.301 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.369 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.92% β-sheet: 0.00% Coil/Unstructured: 73.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF03062	MBOAT	15.53
PF08044	DUF1707	8.74
PF04962	KduI	2.91
PF12681	Glyoxalase_2	1.94
PF07883	Cupin_2	1.94
PF04775	Bile_Hydr_Trans	0.97
PF04998	RNA_pol_Rpb1_5	0.97
PF02230	Abhydrolase_2	0.97
PF07077	DUF1345	0.97
PF01061	ABC2_membrane	0.97
PF00563	EAL	0.97
PF00005	ABC_tran	0.97
PF00211	Guanylate_cyc	0.97
PF03640	Lipoprotein_15	0.97
PF04191	PEMT	0.97
PF02371	Transposase_20	0.97
PF04542	Sigma70_r2	0.97
PF00034	Cytochrom_C	0.97
PF06224	HTH_42	0.97
PF00730	HhH-GPD	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3717	5-keto 4-deoxyuronate isomerase	Carbohydrate transport and metabolism [G]	2.91
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.97
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.97
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.97
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.97
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.97
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.97
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.97
COG0086	DNA-directed RNA polymerase, beta' subunit/160 kD subunit	Transcription [K]	0.97
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.97
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.97
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.97
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.97
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.97
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.97
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.97
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.97
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	68.93 %
Unclassified	root	N/A	4.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51.46 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	15.53 %
Unclassified	root	N/A	4.85 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.81 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	15.53 %
Unclassified	root	N/A	4.85 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.97 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	39.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.53 %
Unclassified	root	N/A	4.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.97 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	39.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.53 %
Unclassified	root	N/A	4.85 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.97 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY01A1QOP	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300000956\|JGI10216J12902_105911652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1225	Open in IMG/M
3300004020\|Ga0055440_10030969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1103	Open in IMG/M
3300004114\|Ga0062593_100147135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1778	Open in IMG/M
3300004153\|Ga0063455_101389120	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300004463\|Ga0063356_103600693	Not Available	667	Open in IMG/M
3300004479\|Ga0062595_101941837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	566	Open in IMG/M
3300005184\|Ga0066671_10501113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	780	Open in IMG/M
3300005332\|Ga0066388_101091353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1350	Open in IMG/M
3300005435\|Ga0070714_101021720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	805	Open in IMG/M
3300005535\|Ga0070684_101891220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300005560\|Ga0066670_10163153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1313	Open in IMG/M
3300005566\|Ga0066693_10226690	Not Available	735	Open in IMG/M
3300005566\|Ga0066693_10352320	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005568\|Ga0066703_10287396	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300005586\|Ga0066691_10124038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1469	Open in IMG/M
3300006034\|Ga0066656_10879501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300006573\|Ga0074055_11657594	All Organisms → cellular organisms → Bacteria → Terrabacteria group	526	Open in IMG/M
3300006797\|Ga0066659_11607214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	546	Open in IMG/M
3300006800\|Ga0066660_11199995	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300006800\|Ga0066660_11360498	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300006806\|Ga0079220_11867356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	532	Open in IMG/M
3300006806\|Ga0079220_11979653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	519	Open in IMG/M
3300006893\|Ga0073928_10380159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1038	Open in IMG/M
3300007076\|Ga0075435_100809600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	816	Open in IMG/M
3300009090\|Ga0099827_11237353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300009098\|Ga0105245_10419066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1342	Open in IMG/M
3300009137\|Ga0066709_103693681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300010046\|Ga0126384_11435400	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300010335\|Ga0134063_10009499	All Organisms → cellular organisms → Bacteria	3763	Open in IMG/M
3300010359\|Ga0126376_10277374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1443	Open in IMG/M
3300010398\|Ga0126383_11413345	All Organisms → cellular organisms → Bacteria → Terrabacteria group	786	Open in IMG/M
3300010868\|Ga0124844_1223619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300010868\|Ga0124844_1225862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300011994\|Ga0120157_1048261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	922	Open in IMG/M
3300012201\|Ga0137365_10740759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	718	Open in IMG/M
3300012951\|Ga0164300_10061385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1527	Open in IMG/M
3300012971\|Ga0126369_11672201	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300012971\|Ga0126369_13543395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300012977\|Ga0134087_10138941	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300012985\|Ga0164308_12131743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	522	Open in IMG/M
3300012986\|Ga0164304_10783964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300012989\|Ga0164305_10746955	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300013297\|Ga0157378_10642572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1076	Open in IMG/M
3300014745\|Ga0157377_10195827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1280	Open in IMG/M
3300015374\|Ga0132255_101392064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1059	Open in IMG/M
3300015374\|Ga0132255_106116573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300016319\|Ga0182033_10767703	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300016319\|Ga0182033_11892874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300016341\|Ga0182035_10743296	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300016387\|Ga0182040_11472694	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300016422\|Ga0182039_11861280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300017947\|Ga0187785_10303592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300017966\|Ga0187776_10912577	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300017966\|Ga0187776_10962146	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300017966\|Ga0187776_11377580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	536	Open in IMG/M
3300017973\|Ga0187780_11158181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	566	Open in IMG/M
3300017974\|Ga0187777_10452517	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300017974\|Ga0187777_10738987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	700	Open in IMG/M
3300018432\|Ga0190275_10465809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1290	Open in IMG/M
3300018433\|Ga0066667_11504940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300019887\|Ga0193729_1261802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	539	Open in IMG/M
3300021445\|Ga0182009_10718063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300025538\|Ga0210132_1069730	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300025551\|Ga0210131_1051821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	667	Open in IMG/M
3300025922\|Ga0207646_10353851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1327	Open in IMG/M
3300025927\|Ga0207687_11400165	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300025929\|Ga0207664_10040051	All Organisms → cellular organisms → Bacteria	3640	Open in IMG/M
3300025939\|Ga0207665_11683320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	502	Open in IMG/M
3300025944\|Ga0207661_11692139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300026317\|Ga0209154_1309004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	520	Open in IMG/M
3300026552\|Ga0209577_10204721	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300026816\|Ga0207509_107211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	573	Open in IMG/M
3300027466\|Ga0207484_107470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	510	Open in IMG/M
3300027560\|Ga0207981_1105947	Not Available	518	Open in IMG/M
3300027821\|Ga0209811_10142670	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300028556\|Ga0265337_1071458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	954	Open in IMG/M
3300028563\|Ga0265319_1041385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1555	Open in IMG/M
3300031546\|Ga0318538_10121959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1361	Open in IMG/M
3300031572\|Ga0318515_10732824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	522	Open in IMG/M
3300031573\|Ga0310915_10738942	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300031744\|Ga0306918_11171374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	594	Open in IMG/M
3300031768\|Ga0318509_10687485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300031771\|Ga0318546_10558817	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300031792\|Ga0318529_10500854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300031793\|Ga0318548_10561091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	556	Open in IMG/M
3300031798\|Ga0318523_10137313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1213	Open in IMG/M
3300031799\|Ga0318565_10578144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	540	Open in IMG/M
3300031941\|Ga0310912_10752544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	754	Open in IMG/M
3300032008\|Ga0318562_10488907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	714	Open in IMG/M
3300032009\|Ga0318563_10595107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300032035\|Ga0310911_10836922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	531	Open in IMG/M
3300032043\|Ga0318556_10493223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	641	Open in IMG/M
3300032043\|Ga0318556_10767011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300032164\|Ga0315283_10496514	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300032205\|Ga0307472_102413316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	534	Open in IMG/M
3300032261\|Ga0306920_101607925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	924	Open in IMG/M
3300032261\|Ga0306920_102790619	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300032770\|Ga0335085_12227934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	550	Open in IMG/M
3300032893\|Ga0335069_12167224	Not Available	582	Open in IMG/M
3300033289\|Ga0310914_10512563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1085	Open in IMG/M
3300033803\|Ga0314862_0053543	All Organisms → cellular organisms → Bacteria → Proteobacteria	876	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.32%
Host-Associated	Host-Associated	10.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.47%
Plants	Host-Associated → Plants	10.68%
Aquatic	Environmental → Aquatic	4.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.77%
Marine	Environmental → Aquatic → Marine	2.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.91%
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.05%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.71%
Loam	Environmental → Terrestrial → Soil → Loam	9.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.94%
Lake	Environmental → Aquatic → Freshwater → Lake	0.97%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.53%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.97%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.97%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.97%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025538	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025551	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026816	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-B (SPAdes)	Environmental	Open in IMG/M
3300027466	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-B (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_02302080	2170459010	Grass Soil	WSLDYLRRLRTRYDFVVVDCENIHTWGGTTTDWKNPGHVDQLNMRRMLRYVVGHSDGVL
JGI10216J12902_1059116522	3300000956	Soil	IHAWGGNDSDWTNARHVDRLNMRRMLRYIVAHSDGVLR*
Ga0055440_100309691	3300004020	Natural And Restored Wetlands	DCEDIRRWGGTASDWFNATHVNRANMRRELRYIVAQSDGALR*
Ga0062593_1001471351	3300004114	Soil	LRALHRRLRFVVVDAEDSRRWGGTSRDWTNATHVNRRNMRRLLRYIVAHSDGVLN*
Ga0063455_1013891202	3300004153	Soil	AEDIHRWGGSAGDWTNATHVNRINMRRLLRYIVANSDGAVG*
Ga0063356_1036006932	3300004463	Arabidopsis Thaliana Rhizosphere	AYLAELRARFQFVLVDGEDIRSWGGRAADFSNATHINGKNMQRLLAYVVAHSQGALR*
Ga0062595_1019418372	3300004479	Soil	TLWKAGQLRRQGYRFVLVNCEDMRTWHGTAYDWSNASHVNRRNMRRELRYIVAHSDGALR
Ga0066671_105011133	3300005184	Soil	AYLRSLRRRYDFAVVDCENIHTWGGTDSDWSNATHVNQINMRRMLGYVVAHSDDALR*
Ga0066388_1010913533	3300005332	Tropical Forest Soil	RYDFVVVDCQDIHKWGGTDYDWTNAGHVDRANMRRMLRYIVSDSGHALN*
Ga0070714_1010217202	3300005435	Agricultural Soil	YDFVVVDCQDIHKWGGTDYDWTNATHVDRANMRRMLRYIATHSDGALN*
Ga0070684_1018912202	3300005535	Corn Rhizosphere	YLRRLRARYDFVVVDCENIRTWGGTMTDWKNPGHVDQLNMRRMLRYVVAHSDGAL*
Ga0066670_101631534	3300005560	Soil	AATSFAYLRSLRRRYDFAVVDCENIHTWGGTDSDWSNATHVNQINMRRMLGYVVAHSDGALR*
Ga0066693_102266903	3300005566	Soil	ATSFAYLRSLRRRYDFAVVDCENIHTWGGTDSDWSNATHVNQINMRRMLGYVVAHSDGALR*
Ga0066693_103523202	3300005566	Soil	RFRFVVVNCEDMRKWHGTKRDWSNASHVNRANMRRELRYIVARSDGLLR*
Ga0066703_102873961	3300005568	Soil	SLGVFRRLHKHYRFVLVDAQDIRKWHGKASDFSNATHVNRQNMRRMLRYIVAHSDGALR*
Ga0066691_101240382	3300005586	Soil	VLVNCEDIRKWHGTKSDWSNASHVSRPNMRRELRYIVAHSDGVLR*
Ga0066656_108795012	3300006034	Soil	EDIRRWGGSPQQFTNATHINRRNMRRLLRYVVAHSDGALR*
Ga0074055_116575941	3300006573	Soil	NSHTWGGTDYDWTNPTHVNRANMRRMLRYIVTHAQGSLN*
Ga0066659_116072141	3300006797	Soil	FVVVNCEDMRKWRGTKRDWSNASHVDRANMSRELRYIVARSDGVLR*
Ga0066660_111999952	3300006800	Soil	RRLHEHYRFVLVDAQDIRKWHGKASDFSNATHVNRRNMRRMLRYIVAHSDGALR*
Ga0066660_113604982	3300006800	Soil	KWHGTKRDWSNASHVNRDNMRRELRYIVAHSDGVLR*
Ga0079220_118673562	3300006806	Agricultural Soil	WGGNDRDWSNATHVNRANMRLELRYIVAHSRGAAALRR*
Ga0079220_119796531	3300006806	Agricultural Soil	GGNDYDWTNATHVNRSNMRLMLRYIVAHSDGALR*
Ga0073928_103801591	3300006893	Iron-Sulfur Acid Spring	LHSLRGRYDFVVVNCENIHACGGNDTDWANPTHVNRLNMQRMLRYVVAHSDGALH*
Ga0075435_1008096001	3300007076	Populus Rhizosphere	AREHYGNPVTAASLDYLRRLRARYDFVVIDCENIHTWGGTTTDWKNPGHVDQLNMRRMLRYIVAHSDGAL*
Ga0099827_112373531	3300009090	Vadose Zone Soil	KRFRFVFVDAQDIRTWGGTAYDWSNATHVNRANMRRMLRYIVAHSDGALR*
Ga0105245_104190665	3300009098	Miscanthus Rhizosphere	VDCENIRTWGGTTTDWKNPGHVDQLNMRRMLRYVVAHSDGAL*
Ga0066709_1036936811	3300009137	Grasslands Soil	QDIHRWGGSPQDFTNATHVNRRNMRRMLRYILANSHGALG*
Ga0126384_114354002	3300010046	Tropical Forest Soil	GGTDYDWANPTHIDRANMRRMLRYVVAHSDGALK*
Ga0134063_100094991	3300010335	Grasslands Soil	RWGGSPQQFTNATHINRRNMRRLLRYVVAHSNGALG*
Ga0126376_102773744	3300010359	Tropical Forest Soil	DFVVVDCENIHNWGGTTTDWRNPGHVDQLNMRRMLRYIVAHSDGAL*
Ga0126383_114133451	3300010398	Tropical Forest Soil	VVVDCEDISKWGGNGSDWDNATHVDELNMRRMLKYVVARSDGALR*
Ga0124844_12236191	3300010868	Tropical Forest Soil	VNCQDIHTWGGTDFDWTNAGHVDRANMRRMLRYIVSHSDGALN*
Ga0124844_12258622	3300010868	Tropical Forest Soil	NCQDIHTWGGTDFDWTNAGHVDRANMRRMLRYIVSHSDGALN*
Ga0120157_10482612	3300011994	Permafrost	CSLDYLHGLQARYQLVVGNCENIHTWGGTTSNWKNATHVDGLNMRRMLRYIVAHSDGALH
Ga0137365_107407592	3300012201	Vadose Zone Soil	QDIRTWGGTAYDWSNATHVNRANMRRLLRYVVAHSAGALR*
Ga0164300_100613852	3300012951	Soil	EKVAQLHKQFRFVLVNCEDVSKWGGTTTDWSNASHVSRVNMRRELRYIVAHAHGVLR*
Ga0126369_116722012	3300012971	Tropical Forest Soil	VVDCEDSRWWGGDNRDWSNATHVNRANMRRELRYIVAHSDGALQ*
Ga0126369_135433951	3300012971	Tropical Forest Soil	PRLDFVVVNCQDIHTWGGTDYDWTNASHIDRANMRRMLRYIVTHSDGALN*
Ga0134087_101389411	3300012977	Grasslands Soil	QLHRRFRFVLVNCEDIRKWHGTKSDWSNASHVSRPNMRRELRYIVAHSDGVLR*
Ga0164308_121317432	3300012985	Soil	LEKIAELQKHYRFVFVDCQDIRKWGGTVYDWSNATHVNRANMRRMLRYIVARSGGALR*
Ga0164304_107839641	3300012986	Soil	QDIHTWGGTDYDWANVTHVDRANMRRMLRYVVTHSDGALN*
Ga0164305_107469552	3300012989	Soil	FVFVDAEDIRTWDGNPRDWSNATHINRGNMRTLLRYVVAHSDGALR*
Ga0157378_106425721	3300013297	Miscanthus Rhizosphere	RYDFVVVDCENIRTWGGTTTDWKNPGHVDQLNMRRMLRYIVAHSDGGL*
Ga0157377_101958271	3300014745	Miscanthus Rhizosphere	LRARYDFVVVDCENIRTWGGTTTDWKNPGHVDQLNMRRMLRYVVAHSDGAL*
Ga0132255_1013920643	3300015374	Arabidopsis Rhizosphere	LTNSLTYLDSLRTRYRFVVVDCENIHVWGGNASDWTNARHVDRLNMRRMLRYILAHSKGALR*
Ga0132255_1061165731	3300015374	Arabidopsis Rhizosphere	YLNTVRTRYKFVVVDCEDIHVWGGNASDWTNAKHVNRLNMRRMLRYIVSHSDGALS*
Ga0182033_107677032	3300016319	Soil	VDAQDIRTWGGNDYDWTNATHINRANMRRLLRYVVAHSDGALR
Ga0182033_118928741	3300016319	Soil	RFVLVDCEGVRKWGGTADDWSNATHVNRSNMRRMLRYIVAHSDGALR
Ga0182035_107432962	3300016341	Soil	EKVAALHERFRFVFVDAQDIRTWGGNDYDWTNATHVNRANMRRLLRYVVAHSQGALR
Ga0182040_114726941	3300016387	Soil	KWGGTDYNWTNPTHVDEANMRRMLRYIVAHSDGALK
Ga0182039_118612802	3300016422	Soil	YHFVVVDCQDIHKWGGTDYDWTNTSHVDRANMRRMLRYIVTHASGALN
Ga0187785_103035922	3300017947	Tropical Peatland	EMVAKLHRRFRFVFVDAEDIRRWGGNARDWTNATHINRANMRTLLRYVVAHSDGALR
Ga0187776_109125771	3300017966	Tropical Peatland	PTLRNSLAYLDGLRTRYRFVVVNCENIHTWGGNASDWMNASHVDRLNMRRMLRYIVAHSDGALS
Ga0187776_109621462	3300017966	Tropical Peatland	PRYDFVVVDCQDIRKWGGTDSDWSNASHVDRANMRRMLRYIVAHSDHALN
Ga0187776_113775802	3300017966	Tropical Peatland	FVLVDCQDISKWGGTTYDWENATHVNRANMRRELTYIVAHSQGVLR
Ga0187780_111581811	3300017973	Tropical Peatland	KIAQLHRRFRFVLVDCEDIHRWGGTTSDWVNATHVSTANMRRELRYIVAHSDGALG
Ga0187777_104525171	3300017974	Tropical Peatland	LEKVAQLHKRFRFVLVDCEDIHRWGGTTSDWVNATHVSTANMRRELRYIVAHSDGALG
Ga0187777_107389872	3300017974	Tropical Peatland	FVVVNAEDSRMWGGTDYNWTNPTHVDGANMRRMLRYIVAHSDGALR
Ga0190275_104658092	3300018432	Soil	YLRRLQQRLDFVFVDGQDIHRWGGTSVDWTNATHVNRANMRRLLRYVVKHSGGALK
Ga0066667_115049402	3300018433	Grasslands Soil	HRRYDFVVVDAQDIRRWDGSAEQFTNATHVNRINMRLLLRYIVAHSDGALR
Ga0193729_12618022	3300019887	Soil	FVLVDAEDIRKWGGNTRDWTNATHINRGNMRTLLRYVVAHSDGALR
Ga0182009_107180632	3300021445	Soil	CENIRAWGGSADEFENATHVDRTNMRRMLRYIVAKSDGALG
Ga0210132_10697301	3300025538	Natural And Restored Wetlands	RRWGGTASDWFNATHVNRANMRRELRYIVAQSDGALR
Ga0210131_10518211	3300025551	Natural And Restored Wetlands	DSLRTRYRFVVVNCEDIRTWGGNASDWMNANHVDRLNMRRMLRYIVAHSDGALS
Ga0207710_104192241	3300025900	Switchgrass Rhizosphere	LERYGNPVTAWSLDYLRRLRARYDFVVVDCENIRTWGGTTTDWKNPGHVDQLNMRRMLRYVVAHSDGAL
Ga0207646_103538511	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	DVSKWGGTTTDWSNASHVSRVNMRRELRYIVAHAHGVLR
Ga0207687_114001652	3300025927	Miscanthus Rhizosphere	LHRQFRFVLVNCEDVSKWGGTTTDWSNASHVSRVNMRRELRYIVAHAHGVLR
Ga0207664_100400519	3300025929	Agricultural Soil	CENIRTWGGTMTDWKNPGHVDQLNMRRMLRYVVAHSDGAL
Ga0207665_116833202	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	HGDPVTATSLDFLRSLRSRYDFVVVDCENIHAWGGTDDNWKNATHVDQFNMRRMLRYVVAQSHGALAP
Ga0207661_116921391	3300025944	Corn Rhizosphere	VDCEDSHAWGGADDDWTNPTHVDRANMRRMLRYIASHADGALS
Ga0209154_13090042	3300026317	Soil	AQLHNRFRFVVVNCEDMRKWHGTKRDWSNASHVNRANMRRELRYIVARSDGVLR
Ga0209577_102047211	3300026552	Soil	QYRFVLVDAQDIRKRHGKASDFSNATHVNRQNMRRMLRYIVAHSDGALR
Ga0207509_1072111	3300026816	Soil	EKVAQLHRQFRFVLVNCEDVSKWGGTTTDWSNASHVSRVNMRRELRYIVAHAHGVLR
Ga0207484_1074702	3300027466	Soil	KIAQLKKRFRFVLVNCEDMRKWHGTSKDWSNASHVNRANMRRELRYIVAHSDGALR
Ga0207981_11059472	3300027560	Soil	DCQNSHTWGGTDYDWTNPTHVNRANMRRMLRYIVTHAQGSLN
Ga0209811_101426701	3300027821	Surface Soil	KQFRFVLVNCEDVSKWGGTTTDWSNASHVSRVNMRRELRYIVAHAHGVLR
Ga0265337_10714582	3300028556	Rhizosphere	SNIHVWGGKARDFNNATHVNRRNMRRMLRYIVAHSDGALTR
Ga0265319_10413851	3300028563	Rhizosphere	VVDCSNIHVWGGKARDFNNATHVNRRNMRRMLRYIVAHSDGALTR
Ga0318538_101219592	3300031546	Soil	KKYRFVFVDAQDIRKWGGTARDWSNATHINRANMRRLLRYIVAHSDGALR
Ga0318515_107328241	3300031572	Soil	VSLEYLKSLHGRYDFVVVNAEDSRKWGGTDYNWTNPTHVDEANMRRMLRYIVAHSDGALK
Ga0310915_107389422	3300031573	Soil	RYRFVFVDAQDIRKWGGTARDWSNATHINRANMRRLLPYIVAHSDGALR
Ga0306918_111713742	3300031744	Soil	QDIHRWGGTDYDWTNVSHVDRANMRRMLRYIVAHANGALG
Ga0318509_106874852	3300031768	Soil	LEKFTQLHKRYRFVLVDCEDVRKWGGTADDWSNATHVNRSNMRRMLRYIVAHSDGALR
Ga0318546_105588171	3300031771	Soil	LKKKYRFVFVDAQDIRTWGGNDYDWSNATHVNRSNMRRLLRYIVAHSQAALR
Ga0318529_105008542	3300031792	Soil	LDYLHSLQPRYHFVVVDCQDIHKWGGTDYDWTNTSHVDRANMRRMLRYIVTHASGALN
Ga0318548_105610911	3300031793	Soil	DAQDIRKWGGTARDWSNATHINRANMRRLLPYIVAHSDGALR
Ga0318523_101373133	3300031798	Soil	IRKWGGTDYDWTNLTHVDRANMRRMLRYIVAHSDGALN
Ga0318565_105781442	3300031799	Soil	CQDIHRWGGTDYDWTNVSHVDRANMRRMLRYIVAHANGALG
Ga0310912_107525441	3300031941	Soil	RYDFVVVNAEDSRKWGGTDYNWTNPTHVDEANMRRMLRYIVAHSDGALK
Ga0318562_104889071	3300032008	Soil	CQDIRTWGGNDYDWTNATHVNRSNMRRMLRYIVAHSQGALR
Ga0318563_105951072	3300032009	Soil	VNAEDSRKWGGTDYNWTNPTHVDEANMRRMLRYIVAHSDGALK
Ga0310911_108369222	3300032035	Soil	VAALHERFRFVFVDAQDIRTWGGNDYDWTNATHINRANMRRLLRYVVAHSDGALR
Ga0318556_104932231	3300032043	Soil	RYHFVVVDCQDIHKWGGTDYDWTNTSHVDRANMRRMLRYIVTHASGALN
Ga0318556_107670111	3300032043	Soil	LLPRYDFVVVNCQDIHAWGGTDSDWTNPTHVDRANMRRMLRYIVSHSDGALN
Ga0315283_104965141	3300032164	Sediment	NCQDIRRWHGTTENFANVTHVDWVNMRRMLRYVAAHSDGALS
Ga0307472_1024133161	3300032205	Hardwood Forest Soil	DSRKWGGTNYGWTNPTHVDGANMRRLLRFIVAHSDGALK
Ga0306920_1016079251	3300032261	Soil	GLHSRYDFVVVDCQDIETWGGTDSDWTNPTHVDRANMRRMLRYIVTHANGALN
Ga0306920_1027906192	3300032261	Soil	VAELHKRFRFVFVDCQDIRTWGGNDYDWTNATHVNRANMRRLLRYVVAHSQGALR
Ga0335085_122279342	3300032770	Soil	SPLATSSLQYLDGLHRRFHFVVVNCEDSRKWGGTDYDWANPTHVGRANMRRMLEYVVAHSDGALR
Ga0335069_121672241	3300032893	Soil	VADGEDVRRRGGSASDFWDATHIDYVNTRRLLRYVVAHADGALR
Ga0310914_105125632	3300033289	Soil	ELHKRFRFVFVDCQDIRTWGGNDYDWTNATHVNRANMRRLLRYVVAHSQGALR
Ga0314862_0053543_3_155	3300033803	Peatland	TRYRFVVVDCENIRSCGGNATDWANATHVDRFNMERMLRYIVAHSDGALR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099262

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences