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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026886 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0099864 | Gp0111021 | Ga0207982 |
| Sample Name | Soil and rhizosphere microbial communities from Laval, Canada - mgHAB (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 49131848 |
| Sequencing Scaffolds | 30 |
| Novel Protein Genes | 31 |
| Associated Families | 31 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2 |
| Not Available | 13 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangdongense | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. KB5 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Laval, Canada | |||||||
| Coordinates | Lat. (o) | 45.54 | Long. (o) | -73.72 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001436 | Metagenome / Metatranscriptome | 695 | Y |
| F003565 | Metagenome / Metatranscriptome | 479 | Y |
| F004188 | Metagenome / Metatranscriptome | 449 | Y |
| F005549 | Metagenome / Metatranscriptome | 397 | Y |
| F006476 | Metagenome / Metatranscriptome | 372 | Y |
| F008166 | Metagenome / Metatranscriptome | 338 | Y |
| F014274 | Metagenome | 264 | Y |
| F014308 | Metagenome / Metatranscriptome | 264 | Y |
| F015418 | Metagenome / Metatranscriptome | 255 | Y |
| F017054 | Metagenome / Metatranscriptome | 243 | Y |
| F017405 | Metagenome / Metatranscriptome | 241 | Y |
| F023841 | Metagenome / Metatranscriptome | 208 | Y |
| F026662 | Metagenome | 197 | Y |
| F044600 | Metagenome / Metatranscriptome | 154 | Y |
| F044676 | Metagenome / Metatranscriptome | 154 | Y |
| F048976 | Metagenome / Metatranscriptome | 147 | Y |
| F056104 | Metagenome / Metatranscriptome | 138 | N |
| F057554 | Metagenome / Metatranscriptome | 136 | Y |
| F059194 | Metagenome / Metatranscriptome | 134 | N |
| F060758 | Metagenome / Metatranscriptome | 132 | Y |
| F063548 | Metagenome | 129 | Y |
| F064121 | Metagenome / Metatranscriptome | 129 | Y |
| F065761 | Metagenome / Metatranscriptome | 127 | N |
| F081551 | Metagenome | 114 | N |
| F081571 | Metagenome / Metatranscriptome | 114 | Y |
| F083846 | Metagenome / Metatranscriptome | 112 | Y |
| F096122 | Metagenome / Metatranscriptome | 105 | Y |
| F096937 | Metagenome | 104 | Y |
| F097649 | Metagenome / Metatranscriptome | 104 | Y |
| F097797 | Metagenome / Metatranscriptome | 104 | Y |
| F105132 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207982_1000414 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2120 | Open in IMG/M |
| Ga0207982_1001998 | All Organisms → cellular organisms → Bacteria | 910 | Open in IMG/M |
| Ga0207982_1002368 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 848 | Open in IMG/M |
| Ga0207982_1002823 | All Organisms → cellular organisms → Bacteria | 787 | Open in IMG/M |
| Ga0207982_1003346 | Not Available | 736 | Open in IMG/M |
| Ga0207982_1003977 | Not Available | 689 | Open in IMG/M |
| Ga0207982_1004384 | Not Available | 666 | Open in IMG/M |
| Ga0207982_1004535 | Not Available | 658 | Open in IMG/M |
| Ga0207982_1004815 | Not Available | 645 | Open in IMG/M |
| Ga0207982_1004856 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 642 | Open in IMG/M |
| Ga0207982_1004945 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 639 | Open in IMG/M |
| Ga0207982_1005675 | Not Available | 608 | Open in IMG/M |
| Ga0207982_1006253 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 | 587 | Open in IMG/M |
| Ga0207982_1006326 | All Organisms → cellular organisms → Bacteria | 585 | Open in IMG/M |
| Ga0207982_1006338 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 584 | Open in IMG/M |
| Ga0207982_1006756 | Not Available | 570 | Open in IMG/M |
| Ga0207982_1006781 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 569 | Open in IMG/M |
| Ga0207982_1007042 | Not Available | 562 | Open in IMG/M |
| Ga0207982_1007357 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 553 | Open in IMG/M |
| Ga0207982_1007370 | Not Available | 553 | Open in IMG/M |
| Ga0207982_1007605 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 546 | Open in IMG/M |
| Ga0207982_1007808 | Not Available | 541 | Open in IMG/M |
| Ga0207982_1007987 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 537 | Open in IMG/M |
| Ga0207982_1008097 | Not Available | 534 | Open in IMG/M |
| Ga0207982_1008321 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangdongense | 528 | Open in IMG/M |
| Ga0207982_1008417 | Not Available | 526 | Open in IMG/M |
| Ga0207982_1008693 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 520 | Open in IMG/M |
| Ga0207982_1008802 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans | 517 | Open in IMG/M |
| Ga0207982_1009082 | Not Available | 512 | Open in IMG/M |
| Ga0207982_1009677 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. KB5 | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207982_1000414 | Ga0207982_10004143 | F003565 | MAFLLHCMSPVMAVRPEGANHQWRRNPPGELSIDPVADERLVWVTARVGAS |
| Ga0207982_1001998 | Ga0207982_10019982 | F044676 | GLLGRVDEAKDALAHTLTLQPDLSSAHVEINTVYANPEDRARFLEGLRKAGLKN |
| Ga0207982_1002368 | Ga0207982_10023681 | F083846 | AVGKIGSHVLDWVVCRETPLDQVGYTLGWSSRPQAYAAAVERMKTALDELSKLWGLVR |
| Ga0207982_1002823 | Ga0207982_10028232 | F001436 | MDTHKQDVATLIELLKMAAERWPRSEADQVSQSDLLREDHSLLEMWPEACRRTGIGRREFPPGVIKLWKQRLGRAN |
| Ga0207982_1003346 | Ga0207982_10033462 | F096122 | VHAGCVEPIFEAVLANDPSRITPATAAQRMDEDLLLPELHWLYRGDTPLH |
| Ga0207982_1003977 | Ga0207982_10039771 | F097797 | ALAILTASLPASSVYALGYGGTHSGSQQQRAQPYKAIDGVKNDHNRFHAQVDPPQEPEQTKMITN |
| Ga0207982_1004384 | Ga0207982_10043841 | F017405 | MPDGYDDEAREALLAKAVQAWEPDPALDPRAIGDGSGGDSVACFLRAYYQRVVTEDLAPPSRLATVAQAH |
| Ga0207982_1004535 | Ga0207982_10045352 | F014308 | LIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGTGKIVDKIA |
| Ga0207982_1004815 | Ga0207982_10048152 | F081551 | DRSVEGVMTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK |
| Ga0207982_1004856 | Ga0207982_10048562 | F017054 | ERRRQQRRRELIRWGIRVLIVVLVFLLGIALGQAIQDNPKTGRTVTSDRTIHLPTAGNPGSTITP |
| Ga0207982_1004945 | Ga0207982_10049452 | F057554 | KRHHQTAAERAQMENQFSEVALNIGNITRGSGPADETAMEQYTNDYIDLTRKYADDLGGAAVKKRLTDEVTQVQPWCLQCGVLLLRERAKY |
| Ga0207982_1005675 | Ga0207982_10056752 | F004188 | AYLAHFPDDPAYDLSDGVGGSGQLKSAALMDALAALENEFRTILRQSEASPE |
| Ga0207982_1006253 | Ga0207982_10062531 | F065761 | MKPSAFRIERLLAKVEAEVERRWLRARRYVFHPDEVAEAEAQGLPYALVPRVLSKQEWLERYATPGAEAEFYARLSGGPVAFTRPGQPVAPAAPKPSE |
| Ga0207982_1006253 | Ga0207982_10062532 | F059194 | DVGPPRRGRAPTARERPFKLGPLGTLNQVIVALGKTIRAMADGTLDSQVGARICNGLGIMRACLETRKLEQLESRMDEIADRVANERIAAARERTSTHEAQRLSY |
| Ga0207982_1006326 | Ga0207982_10063263 | F063548 | MAKRLKLAAVVFIVLLVAAQFVRPDRTNPATDASRSIEAQVGTGS |
| Ga0207982_1006338 | Ga0207982_10063381 | F023841 | MRKKLLPLAIVTVLLACVTAATGLAAGSTQVTQFSFTTPRHQLCGIWGTAVVHGTSVVRDTGNGTSFMSETFRGVFTADNGKSTTLSFAGPIKQTSPLVIDE |
| Ga0207982_1006756 | Ga0207982_10067562 | F048976 | FFVGIAFTAIKAGGSAIVIGIAAAVLALWIGTLGLRALLASRPR |
| Ga0207982_1006781 | Ga0207982_10067811 | F008166 | RQLHNPKLRVYYYTAGNSQIRVALTSLMMRLKGAKIPPKIVFPIQLQSEAKRTECVKGYPQEASATSLVPLKLLHRMYP |
| Ga0207982_1007042 | Ga0207982_10070423 | F044600 | MHDEMPGFFPGRPGGEHDEPLLDMILERRPIPPGAPPEIHGLARMLAAAAGPAE |
| Ga0207982_1007357 | Ga0207982_10073571 | F096937 | MRNYRLTIIILAMVFLLFGTVQLGRALQDFHRNYFWTPTTRQEPVEKGKDTFEIYVHGKLLNSRLLAGELALKNGESWSPLQEGDVTVRLNHIQEVTRVPLLLGVGFMSAALAWLIALPGMRSGRESLGSQPPKL |
| Ga0207982_1007370 | Ga0207982_10073701 | F014274 | SEAMNVLTCDHAQPLDCTAPSVNVTIGVLLAAVAVADPSAASIAEAAGLQPRVTKAGVIIITGGLGALSQVTVLEVVVELPQPSMAVNILVCEEEQLLVDTAPSVNVIVAVLHPSVADAEPSAAVIAEEAGLQPSGTSA |
| Ga0207982_1007605 | Ga0207982_10076051 | F026662 | ADSNKSEIVVVFDTEDTKRAKEFAASADLKEAMMAAGVIDTPTIYFLESID |
| Ga0207982_1007808 | Ga0207982_10078081 | F015418 | MSIVSRRTFTKGLLASTLVPGHSAIGQPNDPASIAIIDTPNNAAKVASKLAAQNVKVVVRFFARKPQPGLREKVMASDGNMIDGVREPTILI |
| Ga0207982_1007987 | Ga0207982_10079872 | F056104 | KVVIMTPFLGPQPWEAPDPLPVMRRELKLLLIEMNLLRIEVEQSRSIREEAQAREAFFSASVKQLTEGRDKWRREAERLRDLIEQDPPWSLFWRRLVDSFAASRRSASEWHRA |
| Ga0207982_1008097 | Ga0207982_10080971 | F064121 | IPPKAPVIDPHNGRPVAQSAWAKSIEKVNNKEAELKQRAAATTEWGSVVEKLSVRLKQQAVAARAEALARTVEKLRSLHTGLLVRMADSEFDRVWYGHCPGEAHKPVASGPELVQDGGESSPQRSSVLSE |
| Ga0207982_1008321 | Ga0207982_10083211 | F005549 | ALAQLKKCTAIPAVKYSLIAVAAFLWLFGFADQLPDTVQTAKYVGISLLMVAVAAIA |
| Ga0207982_1008417 | Ga0207982_10084172 | F105132 | DDRKSIIDRITGATEDTVARVQQEMSQSTVVNATRERATSMRQRAQQAAVSQLQVATREDVARLQASLDRIEAALNDLTKRLPETKPRARTRAPKPPTPSD |
| Ga0207982_1008693 | Ga0207982_10086932 | F006476 | EIRTILDSPPLGEDAPSIDAIEHTLTAGYARALALEAERWRLERRIAEVAVELGAKSQNDEHDELTQLGQRLSSADGDLTMLRELLASLRSRADEVRATD |
| Ga0207982_1008802 | Ga0207982_10088021 | F081571 | HCLGILHYGWGSNLASMVDGTTIEAKPAAWGYVFVPWFSTGADGARHFR |
| Ga0207982_1009082 | Ga0207982_10090821 | F097649 | MINAEAMNSVTEKKQRRRSILTRDVMAGIPVLVQQGLKAEAIAARLGCTVGTLKVRCSQAQISLRTPKVVKVVPLVPLVPAPTPSKPPQSKRCFAFAIP |
| Ga0207982_1009677 | Ga0207982_10096771 | F060758 | VTVRFSVTVRRVREDGSEAPLDGELAAALAAPAEQFAGLAAWAADEARFCDHGEREKVIGQEGRELQRRLLQASFDVDAAREERASGVTSAAGIPHGSVEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |