Metagenome Family F063548

Overview

Basic Information

• Family ID: F063548
• Family Type: Metagenome
• Number of Sequences: 129
• Average Sequence Length: 46 residues
• Representative Sequence: MSRRLRQAAVVFIVVFAAAQLVRPQRTNPATDVSRTIQAHVGTA
• Number of Associated Samples: 111
• Number of Associated Scaffolds: 129

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 97.66 %
• % of genes near scaffold ends (potentially truncated): 94.57 %
• % of genes from short scaffolds (< 2000 bps): 94.57 %
• Associated GOLD sequencing projects: 108
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (90.698 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (6.977 % of family members)
• Environment Ontology (ENVO): Unclassified (31.783 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (40.310 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 31.94%
  β-sheet: 0.00%
  Coil/Unstructured: 68.06%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF12674	Zn_ribbon_2	2.33
PF05787	DUF839	2.33
PF02954	HTH_8	2.33
PF13380	CoA_binding_2	1.55
PF07883	Cupin_2	1.55
PF00561	Abhydrolase_1	0.78
PF07396	Porin_O_P	0.78
PF02894	GFO_IDH_MocA_C	0.78
PF13442	Cytochrome_CBB3	0.78
PF08241	Methyltransf_11	0.78

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG3211	Secreted phosphatase, PhoX family	General function prediction only [R]	2.33
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.78
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.78
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.78
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.78
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.78
COG3038	Cytochrome b561	Energy production and conversion [C]	0.78
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.78
COG3746	Phosphate-selective porin	Inorganic ion transport and metabolism [P]	0.78
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.78

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.70 %
Unclassified	root	N/A	9.30 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.70 %
Unclassified	root	N/A	9.30 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.70 %
Unclassified	root	N/A	9.30 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	13.95 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.78 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.55 %
Unclassified	root	N/A	9.30 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.20 %
Thermoanaerobaculia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia	1.55 %
Unclassified	root	N/A	9.30 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.30 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.78 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.20 %
Unclassified	root	N/A	9.30 %
unclassified Firmicutes sensu stricto	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto	0.78 %
unclassified Thermoanaerobaculia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia	1.55 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.78 %
Firmicutes bacterium RBG_13_65_8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium RBG_13_65_8	0.78 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.20 %
Thermoanaerobaculia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	1.55 %
Unclassified	root	N/A	9.30 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.78 %
Firmicutes bacterium RBG_13_65_8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium RBG_13_65_8	0.78 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.20 %
Thermoanaerobaculia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	1.55 %
Unclassified	root	N/A	9.30 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.78 %
Firmicutes bacterium RBG_13_65_8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium RBG_13_65_8	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.20 %
Thermoanaerobaculia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	1.55 %
Unclassified	root	N/A	9.30 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.78 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.78 %
Firmicutes bacterium RBG_13_65_8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium RBG_13_65_8	0.78 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.20 %
Thermoanaerobaculia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	1.55 %
Unclassified	root	N/A	9.30 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000789|JGI1027J11758_12435034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599
3300000789|JGI1027J11758_12444172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550
3300004281|Ga0066397_10145141	All Organisms → cellular organisms → Bacteria	538
3300004480|Ga0062592_100600011	Not Available	935
3300004480|Ga0062592_102310010	All Organisms → cellular organisms → Bacteria	538
3300005294|Ga0065705_10591381	Not Available	712
3300005332|Ga0066388_100293521	All Organisms → cellular organisms → Bacteria	2270
3300005332|Ga0066388_102013130	Not Available	1036
3300005332|Ga0066388_104673571	All Organisms → cellular organisms → Bacteria	697
3300005335|Ga0070666_11273970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.99%
Host-Associated	Host-Associated	31.01%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.53%
Plants	Host-Associated → Plants	31.01%
Terrestrial	Environmental → Terrestrial	60.47%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.78%
Freshwater	Environmental → Aquatic → Freshwater	3.10%
Peat	Environmental → Terrestrial → Peat	0.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.93%
Sediment	Environmental → Aquatic → Sediment	5.43%
Soil	Environmental → Terrestrial → Soil	58.91%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.20%
Loam	Environmental → Terrestrial → Soil → Loam	11.63%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.43%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.10%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.10%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.20%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.43%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.43%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.78%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.33%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.33%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.55%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.33%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.78%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.55%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.20%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.78%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_124350341	3300000789	Soil	MSRRMKQAAIVFVAVFAAAQFVRPERATPATDVSRTIQ
JGI1027J11758_124441721	3300000789	Soil	MSRRMKQAAIVFVAVFAAAQFVRPERATPATDVSRTXXAQ
Ga0066397_101451411	3300004281	Tropical Forest Soil	MSRRLKQAAVVFVVVFAVAQLVRPEHANPATDPTRTIRAHMGDASGLPAVLDRACG
Ga0062592_1006000111	3300004480	Soil	MKRRLRQGALVLVVAFAAAQLVRPQRANPPIDPARTIRAHVSPSSRLPAVLDR
Ga0062592_1023100102	3300004480	Soil	VSTRLKQAAVVFIIVFAAAQFVRPERANPATDARRTIQAHVGTASGLVAV
Ga0065705_105913811	3300005294	Switchgrass Rhizosphere	MSRRLRQAAVVFIVVFAAAQLVRPQRTNPATDVSRTIQAHVGTA
Ga0066388_1002935214	3300005332	Tropical Forest Soil	VGRRLLQVAVVVVVLFAAAQLVRPPHSNPPIDASRTIEAHLGAANGLAAVLNRSC
Ga0066388_1020131301	3300005332	Tropical Forest Soil	MSRRLKQAAVVFVAVLAAAQLIRPEHVNPPTDATRTIQAHETTKGLA
Ga0066388_1046735712	3300005332	Tropical Forest Soil	MNRRLKQGAFVLVVVFAAAQLVRPERANPPTDVSRTIEAHVGTTSGLGAVLNRACSD
Ga0070666_112739702	3300005335	Switchgrass Rhizosphere	MSRRMKQAATVFVAVFAAAQFVRPERAPPTTDVSRTIQAQIGTANGLAAVLD
Ga0070687_1006084432	3300005343	Switchgrass Rhizosphere	VSRRLKQAAIALVAVFAAAQLVRPERANPPTGAHRTIQAHMPTGSGLVA
Ga0070692_105679771	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VSRRPKQAAVVFIIVFAAAQFVRPERANPATDARRTIQAHVG
Ga0070675_1004193711	3300005354	Miscanthus Rhizosphere	VSRQLKRAAVVFIVVFAAAQLVRPERANPATDERRTIQAHVGTANGLVAVLDRACR
Ga0070709_107327672	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MGRRLKNAAIILIILFAAAQLVRPSHANPPTDASRAIQAHVSTHGLATILD
Ga0066686_108709641	3300005446	Soil	MRRLKQAAVVFVVVFAAAQFVRPERANPATDPNRTIRAHMGTA
Ga0070678_1015582892	3300005456	Miscanthus Rhizosphere	MRRRLKQAAVVFVVIFAAAQLVRPERTNPATDASHTIQAHVG
Ga0068867_1009466402	3300005459	Miscanthus Rhizosphere	LKQAAVVFIIVFAAAQFVRPERANPATDVHRTIQAHVETASAR*
Ga0073909_100389063	3300005526	Surface Soil	VRRRLKQAAVIFVVVFAAAQLVRPGRANPATDPSRTIQAHVGTASGLVAVLD
Ga0070697_1016848011	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRLQLAAIVVAAVFAAAQLIRPDRANPPTDAGRTIQAHPGTASGLVAVLDRACR
Ga0070664_1008651412	3300005564	Corn Rhizosphere	MSRRMKQAATVFVAVFAAAQFVRPERAPPTTDVSRTIQA
Ga0068859_1029439951	3300005617	Switchgrass Rhizosphere	MPKRLKQGAVVFIVVGAAAQLVRPDRANPATDDSRTIHAYLGAAAGLTAVLDRSCRD
Ga0068864_1011424341	3300005618	Switchgrass Rhizosphere	MSRGVKQAAVVFVIVLAAAQLVRPEHANPATDATRTIQAHAGTTSELVAVLDRS
Ga0066903_1012135821	3300005764	Tropical Forest Soil	MNRRTKQVAVVFVVLLAAAQLIRPDSTNPATDASHTIEAVVGTHDGLVAVLDRSC
Ga0066903_1048877262	3300005764	Tropical Forest Soil	MRTRLKQAAIVFVVVFAAAQLVRPGRTNPTIDPSRTIQAHEGTTSELVAVLDR
Ga0066903_1076433341	3300005764	Tropical Forest Soil	MSKRLKQAAVIFIVVLAAAQLVRPERANPPTDASRTIQAHVGTASGLAAVL
Ga0066903_1089106811	3300005764	Tropical Forest Soil	VRTRVKRAAVVLTVVIVAAQLVRPGRANPATDASRTFAAHAG
Ga0074470_101378501	3300005836	Sediment (Intertidal)	MKKRLKQATVAFLAVFALAQLVRPERANPPIDAGRTIRAH
Ga0068862_1017969351	3300005844	Switchgrass Rhizosphere	MRRRLTQAVVIFGVVFAAAQLVRPDRTNPPIDPSRTIQAH
Ga0066653_106505161	3300006791	Soil	VSRRLKQAVVVLVVVFAAAQLVRPGRGNPPTNPSRTIQAHVPTTSGLAAV
Ga0066659_109423431	3300006797	Soil	MNRRLKQAVLVFIVVFAAAQLIRPERANPATDVSRTIEAHV
Ga0075421_1018033231	3300006845	Populus Rhizosphere	VSRRLKQSVVVFVVVFAAAQLVRPERANPATDATRAIQAHAGTTSELVA
Ga0075433_101751783	3300006852	Populus Rhizosphere	VSRRLKQAAVVFIIVFAAAQFVRPERANPATDARRTIQARVGTASGES*
Ga0075425_1017894571	3300006854	Populus Rhizosphere	VSRAPRRIAVSRRLKQAAVVFIIVFAAAQFVRPERANPATDARRTIQARVGTASGES*
Ga0075425_1027509571	3300006854	Populus Rhizosphere	MTRAKQAAVVLILVLAAAQLVRPERANPPIDPSRTIQAQLGTASE
Ga0075434_1017745221	3300006871	Populus Rhizosphere	VNRRVKQAVIVIVVVVAAAQLVRPERANPPTDADRTIQ
Ga0079217_101878912	3300006876	Agricultural Soil	VSTRLKQAAVVFIIVFAAAQFVRPERANPATDARRTIQAHV
Ga0079218_121262051	3300007004	Agricultural Soil	VSGRLKQAAVVFIIVLAAAQFVRPERANPATDARRTIQAHVGTASGLVAV
Ga0105240_127703701	3300009093	Corn Rhizosphere	VSRRLKQAAIVILAVFAAAQLVRPARTNPATDSSRT
Ga0111539_106070683	3300009094	Populus Rhizosphere	VSTRLKQAAVVFIVVFAAAQLVRPERANPATDATRTIQAHTGTT
Ga0105245_131681992	3300009098	Miscanthus Rhizosphere	MNRRLKQAAVVFVFVFAAAQFVRPERANPATDVGRTIQAHGGTTSGLVAV
Ga0075418_101791504	3300009100	Populus Rhizosphere	MSRRLTLVAVTVVLAFAVAQLVRPARANPPTDPSRTIQAHLGTAPE
Ga0075418_105113781	3300009100	Populus Rhizosphere	MTRRLRQAAILFVVVFAAAQLIRPERANPPTDPSHTFQAQAGTA
Ga0075418_130173122	3300009100	Populus Rhizosphere	MIRRLKQAAVVLVIVLAAAQLVRPDRENPATNATRTIRAHAGTT
Ga0113563_112754643	3300009167	Freshwater Wetlands	MSRRMKQAGVVFVVVFAAAQLVRPDRRNPATDATRTI*
Ga0126380_111073891	3300010043	Tropical Forest Soil	MSRRLKQAAVVFVVVFAAAQLVRPEHANPATDPTRTIRAHMGEASGLPAVLDRACREC
Ga0126382_115410381	3300010047	Tropical Forest Soil	MARRLKQAAVLFVVVFATAQLVRPERANPSTDESRTIQAHVKNAGGMV
Ga0126370_108451551	3300010358	Tropical Forest Soil	MGRRLKQAAIVFVVLFAAAQLVRPSRANPPTDPGRTIQAHETTRGL
Ga0126372_110065941	3300010360	Tropical Forest Soil	MSRRLKRVAVVFVVVLAAAQLVRPERTNPATDAGR
Ga0126372_112261041	3300010360	Tropical Forest Soil	MRRRLTQAVVVFLVLFAAAQLVRPGRTNPPTDPSRTIR
Ga0126379_128578132	3300010366	Tropical Forest Soil	MTKRLAYAAIIVVVVLAGAQLIRPNRANPPTDPSRTIQAHLGA
Ga0105239_115716072	3300010375	Corn Rhizosphere	MSRRLKQVAGVFFIVFAAAQFVRPERANPPTDVSRAIQAQVGTGSALVAVLDRACSD*
Ga0126383_129185522	3300010398	Tropical Forest Soil	MSRRLKQGAIVLVVVLAVAQLIRPSRANPPIDPARTIQAHET
Ga0134121_121981971	3300010401	Terrestrial Soil	MPKRLKKGAVVFVVVVAAAQLVRPDRANPATDASRSI
Ga0134123_119924841	3300010403	Terrestrial Soil	MRRRLVQASVLFVVVFAAAQLVRPERTNPVTDPTRTIRAHVAETSQLPV
Ga0137463_12505161	3300011444	Soil	MSRRLKQIAIVFIVVFAAAQLIRPERTNPPTDPSRTIEAQMKTASGLVAVL
Ga0137330_10429472	3300012134	Soil	VSRRLKQAAVVFIIVLAAAQFVRPGRANPASDARRTIQAQVGTASGLVAVLDRAC
Ga0137380_112266162	3300012206	Vadose Zone Soil	MPISRRLKQAAVVFVVVFAAAQLVRPERANPATDVSRTIQ
Ga0137381_108302561	3300012207	Vadose Zone Soil	MPISRRLKQAAVVFVVVFAAAQLVRPERANPATDVSRTIQAHAG
Ga0150985_1216176312	3300012212	Avena Fatua Rhizosphere	VSKRLKQAAIVIVVLFAAAQLLRPDQTNPPTDPGRTIQAQVGTA
Ga0137366_100261915	3300012354	Vadose Zone Soil	MSRRLKLAAVVFVVFAAAQLVRPERANPATNASHTIQAEAGTAIGLVAV
Ga0137385_109836831	3300012359	Vadose Zone Soil	MPISRRLKQAAVVFVVVFAAAQLVRPERANPATDVSRTIQAHAGTATELVAVLDRACRD
Ga0137375_105983893	3300012360	Vadose Zone Soil	MSRRLKLAAIVFVVFAAAQLVRPERANPATDASRTIQAH
Ga0150984_1106490131	3300012469	Avena Fatua Rhizosphere	LTQAAILIAVVVVAAQLVRPERATPVTDANRTIQAQMPTGSELVAVLDRSC
Ga0157313_10406412	3300012503	Arabidopsis Rhizosphere	MRRRLVQATVLFVVVFAAAQLVRPERTNPATDPTRTIRAHVAEASQLPAVL
Ga0137317_10312952	3300012672	Soil	VSTRLKQAAVVFIIVFAAAQFVRPERANPATDARRTIQA
Ga0153915_101959361	3300012931	Freshwater Wetlands	MSRRLKRAAVVLLVVFAAAQLVRPNRANPPTDVSRTMQAQV
Ga0153915_116806621	3300012931	Freshwater Wetlands	MSRRLKQVAIVFVVVVVAAQLVRPGRANPATDASRTIQAHMGTASGLVAVLDR
Ga0153915_123647491	3300012931	Freshwater Wetlands	MSRRLKQAAVVLVVVFAAAQLVRPNRANPPTDVSRT
Ga0157378_100484346	3300013297	Miscanthus Rhizosphere	MRRRLKQAAVVFVVIFAAAQLVRPERTDPAPDASHTIQAH
Ga0075301_10482821	3300014262	Natural And Restored Wetlands	MTRRLKWVAVVFVVVFAAAQLVRPDRSNPATDANRTIQ
Ga0075351_11492271	3300014318	Natural And Restored Wetlands	MSRRVKQAAVVFVVVFAAAQLIRPERAKPPTDVSRTIQAHVGAASG
Ga0157380_109321912	3300014326	Switchgrass Rhizosphere	VSRRLKSAAVVFVAVFAAAQLVRPERANPATDVSRTIQAQVGTANG
Ga0157380_123708602	3300014326	Switchgrass Rhizosphere	MAVSRRLKQATIVIIVVFAAAQLVRPERTNPTTDVGRALQAQMPTGSGLVAVLDR
Ga0132256_1030041182	3300015372	Arabidopsis Rhizosphere	MSRRLMQAAVVFLIAFAGAQLVRPGPANLPVDDSRTIAAHVGTASGLAGGGPRREQRK
Ga0132256_1037909672	3300015372	Arabidopsis Rhizosphere	MRRRHQAVVVFVAVFAAAQLIRPGRTNPPTDGSRTIEAHVGTTSGLA
Ga0132257_1038710872	3300015373	Arabidopsis Rhizosphere	MRTRLKQAAVVFVIVVAAAQLIRPGRANPAIDVNRTIQAHAGTASGLV
Ga0132255_1031076653	3300015374	Arabidopsis Rhizosphere	MRRLKQALLVFVILFAAAQLVRPERANPAIETSRTIAAHLGAANGLT
Ga0182039_108143693	3300016422	Soil	MSRRLKWAAVAVVAVLAAAQLIRPERTNPPTDEGRTIQAHAGTAS
Ga0187776_103582752	3300017966	Tropical Peatland	MSKRVKQIVIGVVAVFAAAQLIRPARTNPPVDSSRTIQAHVATASGLGAVLDRAC
Ga0184629_101718892	3300018084	Groundwater Sediment	VVFVVIVAAAQLFRPERANPAIDASRTIQAHPGTASGLVA
Ga0184629_104877041	3300018084	Groundwater Sediment	MSRRVKQAAAVFGSVSAAAQFVRPERANPATDATRTIQAHVGTTRELVAVLDRSCRD
Ga0187774_108635671	3300018089	Tropical Peatland	MSRRLTQATVVFVVIFAGAQLVRPDRANPPTDPSRTIQAHTGAS
Ga0190270_110415133	3300018469	Soil	VSRRLKQAAVIFIIVLAAAQLVRPERANPATDARRTIQAHVGTARGLVAVL
Ga0190271_117804432	3300018481	Soil	MRRRLKQVGVVFVVAFAAAQLVRPERANPPTDPSRTIQAHIGSASG
Ga0173482_101840371	3300019361	Soil	MKRLKRAALVFIVVFAAAQLVRPERANPPIDPALTIQTYVGTESGL
Ga0173479_101111251	3300019362	Soil	MGRRLKQAAVVFVVIVAAAQLIRPERANPPTDVSRTIQAQVGTASGLVAVLDRSCRD
Ga0126371_107777862	3300021560	Tropical Forest Soil	MSRRLKWAAVVIVAVLAAAQLIRPERTNPPTDEGRTIQAH
Ga0247667_11130522	3300024290	Soil	MKRRVKQAAVVFVVVLAAAQLVRPERANPPIDTSRTIQAHMGTSS
Ga0207699_110492712	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRMKHVAIVFAAVFSAAQFVRPERGTPQTDVSRTIQAQVGT
Ga0207699_114429771	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRMKQAATVFVAVFAAAQFVRPERAPPTTDVSRT
Ga0207701_110428521	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRLVQATVLFVVVFAAAQLVRPERTNPATDPTRTI
Ga0207709_114457292	3300025935	Miscanthus Rhizosphere	MSKRIKQAAMVFVAVFAAAQFVRPERTQPPTDVSRAIQAQIGTASGLAAVLDRACSD
Ga0207712_117435591	3300025961	Switchgrass Rhizosphere	VSRRLKQAAIALVAVFAAAQLVRPERANPPTGAHRTIQAHMPTGSGL
Ga0207678_104947041	3300026067	Corn Rhizosphere	VSRRSKQAAVVFVIVFAAAQLVRPERANPAIDARRTIQAHVGTASGLVADLDRACSD
Ga0207676_113272621	3300026095	Switchgrass Rhizosphere	MSRGVKQAAVVFVIVLAAAQLVRPEHANPATDATRTIQAHAGTTSELVAVLD
Ga0207683_108352193	3300026121	Miscanthus Rhizosphere	MRRRLKQAAVVFVVIFAAAQLVRPERTNPATDASHTIQAHVGTANGLVAI
Ga0209155_10906142	3300026316	Soil	MRRLKQAAVVFVVVFAAAQFVRPERANPATDPNRTIRAHMGTASTLTAV
Ga0208126_10026162	3300026843	Soil	MSRRLKQAAVVFIVVLVAAQFVRPDRTNPATDASRSIDAQAGTGSEFVA
Ga0207982_10063263	3300026886	Soil	MAKRLKLAAVVFIVLLVAAQFVRPDRTNPATDASRSIEAQVGTGS
Ga0209970_10487853	3300027614	Arabidopsis Thaliana Rhizosphere	VSRRLTQAAVVFIIVFAAAQFVRPERANPATDARRTIQAHVGTASGLVAVLDRACS
Ga0209073_103594632	3300027765	Agricultural Soil	MSRRLKQAAVVLVVVFAAAQLIRPERANPATDVHHTIQSQ
Ga0209069_102493423	3300027915	Watersheds	MSRRVKQAAVVFVIVFAAAQLVRPERANPTTDATRTIQAHVGTTGELAAV
Ga0268264_118128611	3300028381	Switchgrass Rhizosphere	MRRRLKQAAVVFVVIFAAAQLVRPERTNPATDASHTIQAHVGTANGLVA
Ga0307281_100794204	3300028803	Soil	MGRRFWLVAGVFVVAFAAAQLIRPDGANPATDASRTIRAHM
Ga0318561_103930622	3300031679	Soil	MSRRLEQAAVVFVVALAAAQLIRPGRANPPTDATRTIHAHETTR
Ga0310813_116278162	3300031716	Soil	VRRRFQQAVVAFVVLIAAAQLVRPAHTNPTTDPSRAIQAAPGTN
Ga0307469_120851402	3300031720	Hardwood Forest Soil	MSRRLKQAAVVFVIVFAAAQLVRPERANPTIDPSRTIRAHVAESSQLPAV
Ga0310917_102577012	3300031833	Soil	MSRRLKWAAVAVVAVLAAAQLIRPERTNPPTDEGRTIQAHAGTASAL
Ga0307410_115287201	3300031852	Rhizosphere	VIRRLKQAAIVIVAVFAAAQLVRPDRTNPATDVSRPIQA
Ga0306925_101617341	3300031890	Soil	MGRRLKWAAVAVVAVLAAAQLIRPERTNPPTDEGRTIQAHAGTAS
Ga0318551_105917501	3300031896	Soil	MSRRLKWAAVAVVAVLAAAQLIRPERTNPPTDEGRTIQAHAGTASALAAVLDRS
Ga0318520_106913693	3300031897	Soil	MHKRLTQAAVVFIVVLAAAQFVRPVRANPAIDVSRTIQAQASELGAVLD
Ga0310900_111019612	3300031908	Soil	MGRRLKQAAVVFVVIVAAAQLIRPERANPPTDVSRTIQAQVGGRADCPPS
Ga0306923_105862151	3300031910	Soil	MRTRLKQAAVLVVVAVAAAQLVRPSRANPPIDASRTIGAHVEPSSGLAPILD
Ga0307412_117782082	3300031911	Rhizosphere	MRRLKYVAVAFVILLATAQFVRPERANPVTNPDRTIKAHVG
Ga0306921_103119161	3300031912	Soil	MSRRLKWAAVAVVAVLAAAQLIRPERTNPPTDEGR
Ga0310913_113190542	3300031945	Soil	MRKRLKQAAVALLGVFAAAQFVRPARANPPTDVTRTIQSR
Ga0306926_111716991	3300031954	Soil	MSGVSGGWRRLKQAAVVVVVVFAAAQLVRPERTNPPVDPGRTIQAHAGTPSGLP
Ga0307409_1011991462	3300031995	Rhizosphere	VSRRLKQAALVIVSVFAAAQLVRPERTNPTTDVSRTIQAHMPTGSGLVAV
Ga0318504_101760543	3300032063	Soil	VSRRLTRIAVVFVGAFAAAQIVRPDLANPATDPTRSIQA
Ga0318540_105353472	3300032094	Soil	MSRRLKWAAVAVVAVLAAAQLIRPERTNPPTDEGRTIQAHAGTASALAAVLD
Ga0310889_104770021	3300032179	Soil	VSTRLKQAAVVFIIVFAAAQFVRPERANPATDARRTIQAHVGTASGLVAVLDRACS
Ga0310896_103450661	3300032211	Soil	VSRRLKEAAVVFIIVVAAAQFVRPERVSPATDACRTTQAHVGTA
Ga0326726_121634641	3300033433	Peat Soil	MRSRLKQAAVVFAVIIAAAQFVRPDRSNPATEASRTIRAH
Ga0316620_121271661	3300033480	Soil	MNKRLKQAAVAFAVAFAAAQLVRPERANPPIDAGRTIQARVGTASGLSAVLNRACGQCH
Ga0316628_1027948401	3300033513	Soil	VSRRLKRAAVVFVVVFSAAQLVRPERANPPTDARRTIQA
Ga0316628_1036295112	3300033513	Soil	VSRRLKQTAVVLVLAFAAAQLVRPDFANPATDVDRTIQA
Ga0247830_107406343	3300033551	Soil	MSRRLKQGAVAFVVVIAAAQLVRPERSNPATDVKRTIQAHAGTASGLVAV
Ga0364935_0145944_3_116	3300034151	Sediment	MSTRLKQAAVVFIIVFAAAQFVRPERANPATDARRTIQ