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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026857 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0099864 | Gp0111024 | Ga0208893 |
| Sample Name | Soil and rhizosphere microbial communities from Laval, Canada - mgLMB (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 38452579 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 34 |
| Associated Families | 34 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetococcus → Magnetococcus marinus | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 3 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Laval, Canada | |||||||
| Coordinates | Lat. (o) | 45.54 | Long. (o) | -73.72 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002592 | Metagenome / Metatranscriptome | 545 | Y |
| F002945 | Metagenome / Metatranscriptome | 518 | Y |
| F003142 | Metagenome / Metatranscriptome | 505 | Y |
| F005996 | Metagenome / Metatranscriptome | 384 | N |
| F006127 | Metagenome / Metatranscriptome | 381 | Y |
| F006189 | Metagenome / Metatranscriptome | 379 | Y |
| F008463 | Metagenome / Metatranscriptome | 333 | Y |
| F009040 | Metagenome / Metatranscriptome | 324 | Y |
| F015861 | Metagenome / Metatranscriptome | 251 | Y |
| F016190 | Metagenome / Metatranscriptome | 249 | Y |
| F016834 | Metagenome / Metatranscriptome | 244 | Y |
| F020806 | Metagenome / Metatranscriptome | 222 | Y |
| F027582 | Metagenome / Metatranscriptome | 194 | Y |
| F028957 | Metagenome / Metatranscriptome | 190 | N |
| F030923 | Metagenome / Metatranscriptome | 184 | N |
| F033114 | Metagenome / Metatranscriptome | 178 | N |
| F035359 | Metagenome / Metatranscriptome | 172 | Y |
| F036743 | Metagenome / Metatranscriptome | 169 | N |
| F036786 | Metagenome / Metatranscriptome | 169 | N |
| F037791 | Metagenome / Metatranscriptome | 167 | Y |
| F040043 | Metagenome | 162 | Y |
| F046730 | Metagenome / Metatranscriptome | 151 | Y |
| F056104 | Metagenome / Metatranscriptome | 138 | N |
| F060002 | Metagenome / Metatranscriptome | 133 | Y |
| F067511 | Metagenome / Metatranscriptome | 125 | N |
| F070195 | Metagenome / Metatranscriptome | 123 | Y |
| F070443 | Metagenome / Metatranscriptome | 123 | N |
| F075088 | Metagenome / Metatranscriptome | 119 | N |
| F081670 | Metagenome / Metatranscriptome | 114 | N |
| F084326 | Metagenome / Metatranscriptome | 112 | N |
| F084687 | Metagenome / Metatranscriptome | 112 | Y |
| F092605 | Metagenome / Metatranscriptome | 107 | N |
| F094595 | Metagenome | 106 | Y |
| F097681 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208893_1000028 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 2206 | Open in IMG/M |
| Ga0208893_1000042 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1923 | Open in IMG/M |
| Ga0208893_1000052 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetococcus → Magnetococcus marinus | 1840 | Open in IMG/M |
| Ga0208893_1000431 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1076 | Open in IMG/M |
| Ga0208893_1000549 | Not Available | 991 | Open in IMG/M |
| Ga0208893_1000586 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 973 | Open in IMG/M |
| Ga0208893_1000673 | Not Available | 937 | Open in IMG/M |
| Ga0208893_1001143 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 795 | Open in IMG/M |
| Ga0208893_1001194 | Not Available | 786 | Open in IMG/M |
| Ga0208893_1001480 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 737 | Open in IMG/M |
| Ga0208893_1002015 | Not Available | 673 | Open in IMG/M |
| Ga0208893_1002083 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 668 | Open in IMG/M |
| Ga0208893_1002391 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 642 | Open in IMG/M |
| Ga0208893_1002475 | Not Available | 634 | Open in IMG/M |
| Ga0208893_1002686 | Not Available | 620 | Open in IMG/M |
| Ga0208893_1002998 | All Organisms → cellular organisms → Bacteria | 603 | Open in IMG/M |
| Ga0208893_1003000 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 603 | Open in IMG/M |
| Ga0208893_1003030 | All Organisms → cellular organisms → Bacteria | 601 | Open in IMG/M |
| Ga0208893_1003162 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 593 | Open in IMG/M |
| Ga0208893_1003213 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 590 | Open in IMG/M |
| Ga0208893_1003456 | Not Available | 577 | Open in IMG/M |
| Ga0208893_1003671 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 568 | Open in IMG/M |
| Ga0208893_1003737 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 565 | Open in IMG/M |
| Ga0208893_1004224 | Not Available | 546 | Open in IMG/M |
| Ga0208893_1004348 | Not Available | 541 | Open in IMG/M |
| Ga0208893_1004460 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 537 | Open in IMG/M |
| Ga0208893_1004772 | Not Available | 526 | Open in IMG/M |
| Ga0208893_1004915 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 522 | Open in IMG/M |
| Ga0208893_1004979 | All Organisms → cellular organisms → Bacteria | 520 | Open in IMG/M |
| Ga0208893_1005056 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 518 | Open in IMG/M |
| Ga0208893_1005255 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 512 | Open in IMG/M |
| Ga0208893_1005279 | Not Available | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208893_1000028 | Ga0208893_10000282 | F030923 | MLPAGEIPASERGTSRPTGNRALGSWRQRHELSVGTSDERAVTQVKRLSLVMIVTRRPTESYWLEGNSRSPQEAMVTGDCGGVGEHGTFGNGSIEEPERSTVVSARSGNERSMLDEWNIPEKGKRCSGSRIRW |
| Ga0208893_1000042 | Ga0208893_10000422 | F070195 | MTFPLTPTMIVLGLSPADSDACAGTARPINRSNLECRPFLPRRLTQLRRIALDHRSRAQTTCFPLARRNPSSTSNANKPLPQSP |
| Ga0208893_1000052 | Ga0208893_10000523 | F070443 | MIGLEGATCNTALIPEMEEIGANILLAEHIGRALVVGSEPADRLDVDVPGPLGKAGKPHVVDHTLTQRGHGRSPFGFKRQDLCPGTDQIPQHAVL |
| Ga0208893_1000431 | Ga0208893_10004312 | F008463 | MTRDGTVGRSDATERSLPSHWDIDPARVMRPRFADSIRASSPSGLREQAGHMTASDFCAARYIFSCQAGAIHT |
| Ga0208893_1000549 | Ga0208893_10005492 | F027582 | MLHKFKIGTVVNYRPKDRMLSTARGTYTVTGLMPAIKAKPPEYRIKHFSEGLERVAFENELTAGESEHGQR |
| Ga0208893_1000586 | Ga0208893_10005862 | F097681 | RFQVTNISVGFLRSEAGGQVQMTFSGNISSLGYSTSEEPKLNVIVRTKGGASLHSWNLGFSVKCGDNNQPLTPVTHEVPRDLAANLFTNVGAVEIAEFNEPNSSGVKVQPCS |
| Ga0208893_1000673 | Ga0208893_10006731 | F003142 | MVSNFQDSSPLDNCPDASGDDLEGDSKMNSSQVPSRGRPIKFTPGRIQQITNLVERGKSREEIAELIEVTIDSLQVTCSRLGISLRRPRLDNGIRLLPRGKPVPSDGRTTPDLSCDVSVPLQPIAERRQDSQPGPEQTQYTTPHQAGSKAKEMDFANLALTMRYKGEERTTELALTQLAI |
| Ga0208893_1001143 | Ga0208893_10011431 | F056104 | MTPFLGPQPWEAPDPLPVMRRELKLLLIEMNLLRIEVEQSRSIREEAQAREAFFSASVKQLTEGRDKWRREAERLRDLIEQGPPWTLFWRRLVDSFAASRRS |
| Ga0208893_1001194 | Ga0208893_10011942 | F084326 | VFWLVRWHARWRPARSTRQCPMIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA |
| Ga0208893_1001480 | Ga0208893_10014802 | F081670 | LIVAFLLVATLGHVLLAAAIYKCLREDYVNGRGRRATARNTSAAGSDVGRAAAPGGFIETVCATKS |
| Ga0208893_1002015 | Ga0208893_10020151 | F075088 | YCQAQAAECARRARLASSPDIAEDRRNLGLRWLKLAEKARAASRPLTQASKPSVAVPARA |
| Ga0208893_1002083 | Ga0208893_10020832 | F067511 | LPGTRIVTVDRELGSAALLLLQQSQPFPAPDHVGLRDTRFRILVPIRFNEIPPQQAAGLQDLERRKLLECYEADREELDYQRRKAAYRKAEPPTEVYRMPEGCLEAKRQGAERERREADALGSR |
| Ga0208893_1002391 | Ga0208893_10023911 | F002945 | AIVGGLVAMFMITRYSQPERVKPGSPEYVEYIEHYIGECLRNPQAFDRTHSESLSEAEREAACRVTVQQADRLNPENRPLKHP |
| Ga0208893_1002475 | Ga0208893_10024751 | F016190 | DNALRFRVISELPGIEGTLDERVRKGLGTRSANVWEADADGQNYFVAVGRMSNIDWPWQLVVTVPRARQLEPASGSTIILIGVIGLAALFACAVGYAMSRAVGAPMAQLLTNAQLARNGNIELMEDVNTGSREIGEIDEILKEFAMLRRRKGPLAATAFSSERTNNSG |
| Ga0208893_1002686 | Ga0208893_10026861 | F036743 | IGGWGLLTPRQPCGVTLPSRATDGEYQLGGCARVALVSLTLSAGFGLTGCAAIDDLKVSIFQWLDPVNFTGEGEELLGYAPETRLIPPAEIPKQAAKAPSKRIKPATRKLQLPQTVVLPPKKPPISDSPETATPGETEGQSAWPHSMRSRTPNPEAPPSFDERFCAECWRLPAKGE |
| Ga0208893_1002998 | Ga0208893_10029981 | F046730 | MGLENVFLSVLPIVESLARSTIWSSTTFFSNSRSVQRARPLGGLE |
| Ga0208893_1003000 | Ga0208893_10030002 | F060002 | SIEGAKSVLEQLEAIGTDIGSRNVNDYLDLSIIDQLKQEGYFAQLEKAYPVK |
| Ga0208893_1003030 | Ga0208893_10030301 | F036786 | IWRQREPTLKEILSDSIVTALMSADGGDTLELEAMLTQINRKSKSSRQTGRWGTWSCRPAPTHDAPVP |
| Ga0208893_1003162 | Ga0208893_10031621 | F009040 | HRKLLWVKSHGGERCGNAGTMIPAGTVERGERKRTVSEVSKAD |
| Ga0208893_1003213 | Ga0208893_10032132 | F015861 | SKETTHGEQATAPPGEWNVYADAAGLWKMWGNGLLRARDGQVFHGGPTFDLRLPRGRPWRVFVFTRECDFGSLGNADGAAHAMTPCPRSSEFGTFDGDDVPGISVAHFRSPAAALGLHRLRPQRLGSTCPAVNRLGCYELELRVDRVQG |
| Ga0208893_1003456 | Ga0208893_10034561 | F005996 | ATRREALLKLLNRALLLAMTLTLPLSAADPLYGVWKTRPSGKPGDTSKQTMTIEPVADGIRFTTDIDFGSGAGGMSTTYVTKLDGAEVPVYSAGKVVMTLRGKRIGPNTYEGSVAGPGGTGTSKTTLSADGKTMTVDGMMGSIASHLVFDRVK |
| Ga0208893_1003671 | Ga0208893_10036711 | F002592 | MTENPEASVLTAKRAAQHIRLSRANDAYEHLCILTLLPSLAPLHLMLADTSSPRGSDATLANVGPLSEGFERSVASPLQPRRLCAMGRTV |
| Ga0208893_1003737 | Ga0208893_10037371 | F092605 | DRKPILFTDGLVDVTYMCDWCGTETKRAVREPGRAGRVRNGERRGLIA |
| Ga0208893_1004224 | Ga0208893_10042242 | F094595 | LLQEEFATMATSPTPMKKAKQVNRAPQKRTFHFFIRVVDEAGNVIPGAKLKVERIITDARKVIEFMDTPNYSELGLTRVKHEIISTKRGTEEDGATQVG |
| Ga0208893_1004348 | Ga0208893_10043481 | F037791 | VSAYLVLLRMEVTAFHPPPFDRRRLVSVALFLAFIGRANGDL |
| Ga0208893_1004460 | Ga0208893_10044601 | F016834 | GKVFDLSPYSMLAGMGSMYFPNLPWLNPGALALALPLGDAARSIASYAIYAAELAVSIVLLARVIGFSWLMATAAAQLYLYLLFPPFSEVFRIYGWYSLAPYYAHLQAVLNGAAAVLLVCGRLRDWRGNAILAAGFVALFISGLLSAPFTFVFATPAYIAICAALVLTRRPSRAEWAW |
| Ga0208893_1004772 | Ga0208893_10047721 | F033114 | LLAEPAQAETWCIRDAGSPPPGACVFPSSHDCGMAARMNPFGGICEREPLGSGTDNKGTSGRRSAKRKTAGR |
| Ga0208893_1004915 | Ga0208893_10049152 | F006127 | AAVLVCVGTTAWILRAWTRRRYWHKSPSDLHYVVAGTALLLSAGIGVAIASQIVVALGYPPAP |
| Ga0208893_1004979 | Ga0208893_10049791 | F035359 | RLVETASGASVWSNSGWVRRQVGRLNVSEQGISGSMTKSDPREEMVPALVYQLTHDFRPTTERQPAK |
| Ga0208893_1005056 | Ga0208893_10050561 | F040043 | PGARDLTAKRSPIPLGSPKVGKDKKWTEVEQSLRDAGVHASIVAPHSSVQGLLYFDLRSQFDLLNTAHLYVPEIVAIEKNRGLMYFEIDLSRSAER |
| Ga0208893_1005122 | Ga0208893_10051222 | F084687 | MKLVRYRSATGEKPGLILDGEVFDLSAGFAALNHRAP |
| Ga0208893_1005255 | Ga0208893_10052551 | F006189 | RILAISAGSFPDVVAYPEHGYAWVATRDPDPELLARGGDPGVIARFEIPKE |
| Ga0208893_1005279 | Ga0208893_10052791 | F020806 | MLLGFAKLGTILGPMIIEAAMKFQTTSRALIAAAFLAALGVAPVAQAFTIQGSGSSGGQGFMDLDKPAAPPDRLGTGSRLDSESGMSTMKQGNTTFQFGSQRSFDQ |
| Ga0208893_1005612 | Ga0208893_10056121 | F028957 | MTRSIRYPAMNGASRLLALVVGVLILSAVLPAHAPYACTTNYCIRSQSLSVQTPPEWPAVAVEPCCQTHWGALPGGIDWTNAAPVMICTANAEYATAFPNCGGPNNLSQAFPLDYWQPKIGIGVAWPNPKDYRYEMQSVPLIDGPDGTC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |