Sample 3300026829

Overview

Basic Information
IMG/M Taxon OID	3300026829 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0091562 \| Ga0207580
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-11 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	35675874
Sequencing Scaffolds	18
Novel Protein Genes	20
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Serinicoccus → unclassified Serinicoccus → Serinicoccus sp. CUA-874	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
Not Available	6
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003873	Metagenome / Metatranscriptome	464	Y
F007819	Metagenome / Metatranscriptome	344	Y
F011676	Metagenome	288	Y
F013000	Metagenome / Metatranscriptome	275	Y
F016670	Metagenome / Metatranscriptome	245	Y
F017145	Metagenome / Metatranscriptome	242	Y
F021145	Metagenome	220	Y
F026675	Metagenome	197	Y
F033787	Metagenome / Metatranscriptome	176	N
F033892	Metagenome / Metatranscriptome	176	Y
F034239	Metagenome / Metatranscriptome	175	Y
F037445	Metagenome / Metatranscriptome	168	Y
F045439	Metagenome / Metatranscriptome	153	Y
F065174	Metagenome / Metatranscriptome	128	Y
F070184	Metagenome / Metatranscriptome	123	Y
F071480	Metagenome / Metatranscriptome	122	Y
F075167	Metagenome / Metatranscriptome	119	Y
F080668	Metagenome	115	Y
F085659	Metagenome / Metatranscriptome	111	Y
F101241	Metagenome	102	Y

Family

Category

Number of Sequences

3D Structure?

F003873

Metagenome / Metatranscriptome

464

F007819

Metagenome / Metatranscriptome

344

F011676

Metagenome

288

F013000

Metagenome / Metatranscriptome

275

F016670

Metagenome / Metatranscriptome

245

F017145

Metagenome / Metatranscriptome

242

F021145

Metagenome

220

F026675

Metagenome

197

F033787

Metagenome / Metatranscriptome

176

F033892

Metagenome / Metatranscriptome

176

F034239

Metagenome / Metatranscriptome

175

F037445

Metagenome / Metatranscriptome

168

F045439

Metagenome / Metatranscriptome

153

F065174

Metagenome / Metatranscriptome

128

F070184

Metagenome / Metatranscriptome

123

F071480

Metagenome / Metatranscriptome

122

F075167

Metagenome / Metatranscriptome

119

F080668

Metagenome

115

F085659

Metagenome / Metatranscriptome

111

F101241

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207580_1000012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Serinicoccus → unclassified Serinicoccus → Serinicoccus sp. CUA-874	1828	Open in IMG/M
Ga0207580_1000038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1528	Open in IMG/M
Ga0207580_1000302	Not Available	1076	Open in IMG/M
Ga0207580_1001153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	824	Open in IMG/M
Ga0207580_1001253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	804	Open in IMG/M
Ga0207580_1001352	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
Ga0207580_1001570	Not Available	766	Open in IMG/M
Ga0207580_1001889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	732	Open in IMG/M
Ga0207580_1001960	Not Available	727	Open in IMG/M
Ga0207580_1002417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
Ga0207580_1002524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	684	Open in IMG/M
Ga0207580_1002607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	677	Open in IMG/M
Ga0207580_1002916	Not Available	658	Open in IMG/M
Ga0207580_1003551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
Ga0207580_1006092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	544	Open in IMG/M
Ga0207580_1007105	Not Available	521	Open in IMG/M
Ga0207580_1007332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	516	Open in IMG/M
Ga0207580_1008022	Not Available	502	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207580_1000012

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Serinicoccus → unclassified Serinicoccus → Serinicoccus sp. CUA-874

1828

Open in IMG/M

Ga0207580_1000038

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

1528

Open in IMG/M

Ga0207580_1000302

Not Available

1076

Open in IMG/M

Ga0207580_1001153

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

824

Open in IMG/M

Ga0207580_1001253

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

804

Open in IMG/M

Ga0207580_1001352

All Organisms → cellular organisms → Bacteria

791

Open in IMG/M

Ga0207580_1001570

Not Available

766

Open in IMG/M

Ga0207580_1001889

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

732

Open in IMG/M

Ga0207580_1001960

Not Available

727

Open in IMG/M

Ga0207580_1002417

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

691

Open in IMG/M

Ga0207580_1002524

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

684

Open in IMG/M

Ga0207580_1002607

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

677

Open in IMG/M

Ga0207580_1002916

Not Available

658

Open in IMG/M

Ga0207580_1003551

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

627

Open in IMG/M

Ga0207580_1006092

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

544

Open in IMG/M

Ga0207580_1007105

Not Available

521

Open in IMG/M

Ga0207580_1007332

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis

516

Open in IMG/M

Ga0207580_1008022

Not Available

502

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207580_1000012	Ga0207580_10000121	F034239	TSGNGTNPARHKSKRPYRDSALAYAGLGALVFVIAYATGSGLVRSLSGGVAAFLLATAYTWWRIRSREREAERQQP
Ga0207580_1000038	Ga0207580_10000381	F065174	QIRYVPGEQVAAIYPGEVTLKIASAGIGALEPFQAPPPETKWLPGKVPLTTRMSNWLRGR
Ga0207580_1000302	Ga0207580_10003022	F037445	MRVEPQLAFCVREVERAGVEVRVNFGVFAGRRATPAEIDELAKALLPKVGEVAIVAEERHEIGGSSEASLNQVRIEVSP
Ga0207580_1001153	Ga0207580_10011531	F085659	VTYDETWDDAPARRLPLAAIAVVVALGALLTSSYVLYRQSRVVDSERSARRAEIGRLEKQVTLLQSRGAALAGRVGSAEKTLQRRDRGIAPLASRVLKSVFTVETERGLGSGFIAWRDSDASYLL
Ga0207580_1001253	Ga0207580_10012533	F021145	RRFHNNRKRLFSNAPADTASHFAEPFVYRLLAPFWTQIWLRARAG
Ga0207580_1001352	Ga0207580_10013521	F080668	LIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF
Ga0207580_1001570	Ga0207580_10015701	F101241	VALLLLTASVPSASAQNYSFDARRIALGGAGGTPNPASKLAEQQRRYKSILIPVGLVRVLSDLRVFYPNREDFDFSRAVEFATSPLHFVFGRKEDITARSFFRDILNASLQSDPNAYSGFEFPVVTDAEGLLSLTWGKTFML
Ga0207580_1001889	Ga0207580_10018892	F017145	TRTMAARKSSHRHWMLRDIPRTYVLVVWLAFGAALLIYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGVVNCYEAVSRSEKEQRGGMSSLRINAIGKAFNRRDE
Ga0207580_1001960	Ga0207580_10019604	F016670	MFGKQIEFPPAQRHSRNFELLMIGICIACIIVAVVIAKATDWG
Ga0207580_1002417	Ga0207580_10024171	F007819	VSSEDQAVYFNAVPLFVLSGAYLMVAALLAPTLWRERRRVAVTDVALASIFPGIAIPAAIFGAVVLHDRSPIGGHVWPPFVAIVIALIPALIFLRRWSEPAVVVMSGPRAREAEELVSVRDRELDAVAQIVNALARSQDPVEAARTLLDKVESLLGTDFTALALVTADE
Ga0207580_1002524	Ga0207580_10025243	F003873	WMVTRDDSVDLTLKLTAEERDIAHLLPYVRTASHVGRYGWVTAAVTDEESLESALEWLRESYWLKCPAELKAAVEGDD
Ga0207580_1002607	Ga0207580_10026071	F011676	WVAVGATLVASCAVSVGAVSFDHRVAANVRSTFLPPDARWVDHARVGDTTLIQTPATPHARAHEQLFWNRSLTRLAFLDQASPIDAFGHPRVTVADDGRLLLGEKTVRGPLTISNFAVRAQLTGAEMVARGADYELWRPHGTPRMALFVGGLYHTGWLAPAGHLTVWPARSGRVKGTLRVPLSLPAGTKRTVLHLEGPGVDRRVAVSPGQNRVVTIGVDYRGPWT
Ga0207580_1002916	Ga0207580_10029161	F045439	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGK
Ga0207580_1003551	Ga0207580_10035513	F033892	VEQEGAGFRVHVYTTWDTPEQLETFLERGYTFERMLADVAGIETDPPHVMEKIF
Ga0207580_1005137	Ga0207580_10051371	F071480	VTAFKVGSAGPVVLVESADVRTLLLVRRRSVGWQTIRLAKVTAPRFRLGWPGLVLTRAGLPVVAYTRWNGVNLNSQLLVTRVDGKGRLTTRRITDEGFPKSLVPPPAAPVLFGNVVHVVESY
Ga0207580_1006092	Ga0207580_10060921	F075167	ELSPNQALNGMRPLPESVRSIDGVSRLYYIKAKDKVLLIEPNVRTVVGQITAS
Ga0207580_1006459	Ga0207580_10064592	F026675	VRPLAVVGNLSLDRVDGGEPRPGGAPFHAARALRVLGRPALVAVKAADADRRRVLPPLVRLGLPVLWRAGASTATF
Ga0207580_1007105	Ga0207580_10071051	F013000	MKGIRHFLRDFTASAVREHLRSQIEATGGSPDLTRNEIELVRFMCGEGSFDWGFFLAER
Ga0207580_1007332	Ga0207580_10073321	F033787	CALAGVIASSLPAAADWHKPYIYRESNGSWTNVRYDDGVCNYYFSRNSYDNNMHLNKYGDCSHVAIGPDGMARPVYLTPTPYGAVETYGSGLE
Ga0207580_1008022	Ga0207580_10080221	F070184	QVGLRWVSGMSSVDRLEGTGLDTINDNSARWTMPFLTGVRVRF

Scaffold ID

Protein ID

Family

Sequence

Ga0207580_1000012

Ga0207580_10000121

F034239

TSGNGTNPARHKSKRPYRDSALAYAGLGALVFVIAYATGSGLVRSLSGGVAAFLLATAYTWWRIRSREREAERQQP

Ga0207580_1000038

Ga0207580_10000381

F065174

QIRYVPGEQVAAIYPGEVTLKIASAGIGALEPFQAPPPETKWLPGKVPLTTRMSNWLRGR

Ga0207580_1000302

Ga0207580_10003022

F037445

MRVEPQLAFCVREVERAGVEVRVNFGVFAGRRATPAEIDELAKALLPKVGEVAIVAEERHEIGGSSEASLNQVRIEVSP

Ga0207580_1001153

Ga0207580_10011531

F085659

VTYDETWDDAPARRLPLAAIAVVVALGALLTSSYVLYRQSRVVDSERSARRAEIGRLEKQVTLLQSRGAALAGRVGSAEKTLQRRDRGIAPLASRVLKSVFTVETERGLGSGFIAWRDSDASYLL

Ga0207580_1001253

Ga0207580_10012533

F021145

RRFHNNRKRLFSNAPADTASHFAEPFVYRLLAPFWTQIWLRARAG

Ga0207580_1001352

Ga0207580_10013521

F080668

LIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF

Ga0207580_1001570

Ga0207580_10015701

F101241

VALLLLTASVPSASAQNYSFDARRIALGGAGGTPNPASKLAEQQRRYKSILIPVGLVRVLSDLRVFYPNREDFDFSRAVEFATSPLHFVFGRKEDITARSFFRDILNASLQSDPNAYSGFEFPVVTDAEGLLSLTWGKTFML

Ga0207580_1001889

Ga0207580_10018892

F017145

TRTMAARKSSHRHWMLRDIPRTYVLVVWLAFGAALLIYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGVVNCYEAVSRSEKEQRGGMSSLRINAIGKAFNRRDE

Ga0207580_1001960

Ga0207580_10019604

F016670

MFGKQIEFPPAQRHSRNFELLMIGICIACIIVAVVIAKATDWG

Ga0207580_1002417

Ga0207580_10024171

F007819

VSSEDQAVYFNAVPLFVLSGAYLMVAALLAPTLWRERRRVAVTDVALASIFPGIAIPAAIFGAVVLHDRSPIGGHVWPPFVAIVIALIPALIFLRRWSEPAVVVMSGPRAREAEELVSVRDRELDAVAQIVNALARSQDPVEAARTLLDKVESLLGTDFTALALVTADE

Ga0207580_1002524

Ga0207580_10025243

F003873

WMVTRDDSVDLTLKLTAEERDIAHLLPYVRTASHVGRYGWVTAAVTDEESLESALEWLRESYWLKCPAELKAAVEGDD

Ga0207580_1002607

Ga0207580_10026071

F011676

WVAVGATLVASCAVSVGAVSFDHRVAANVRSTFLPPDARWVDHARVGDTTLIQTPATPHARAHEQLFWNRSLTRLAFLDQASPIDAFGHPRVTVADDGRLLLGEKTVRGPLTISNFAVRAQLTGAEMVARGADYELWRPHGTPRMALFVGGLYHTGWLAPAGHLTVWPARSGRVKGTLRVPLSLPAGTKRTVLHLEGPGVDRRVAVSPGQNRVVTIGVDYRGPWT

Ga0207580_1002916

Ga0207580_10029161

F045439

MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGK

Ga0207580_1003551

Ga0207580_10035513

F033892

VEQEGAGFRVHVYTTWDTPEQLETFLERGYTFERMLADVAGIETDPPHVMEKIF

Ga0207580_1005137

Ga0207580_10051371

F071480

VTAFKVGSAGPVVLVESADVRTLLLVRRRSVGWQTIRLAKVTAPRFRLGWPGLVLTRAGLPVVAYTRWNGVNLNSQLLVTRVDGKGRLTTRRITDEGFPKSLVPPPAAPVLFGNVVHVVESY

Ga0207580_1006092

Ga0207580_10060921

F075167

ELSPNQALNGMRPLPESVRSIDGVSRLYYIKAKDKVLLIEPNVRTVVGQITAS

Ga0207580_1006459

Ga0207580_10064592

F026675

VRPLAVVGNLSLDRVDGGEPRPGGAPFHAARALRVLGRPALVAVKAADADRRRVLPPLVRLGLPVLWRAGASTATF

Ga0207580_1007105

Ga0207580_10071051

F013000

MKGIRHFLRDFTASAVREHLRSQIEATGGSPDLTRNEIELVRFMCGEGSFDWGFFLAER

Ga0207580_1007332

Ga0207580_10073321

F033787

CALAGVIASSLPAAADWHKPYIYRESNGSWTNVRYDDGVCNYYFSRNSYDNNMHLNKYGDCSHVAIGPDGMARPVYLTPTPYGAVETYGSGLE

Ga0207580_1008022

Ga0207580_10080221

F070184

QVGLRWVSGMSSVDRLEGTGLDTINDNSARWTMPFLTGVRVRF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026829: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-11 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences