Metagenome / Metatranscriptome Family F045439

Basic Information
Family ID	F045439
Family Type	Metagenome / Metatranscriptome
Number of Sequences	153
Average Sequence Length	50 residues
Representative Sequence	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGK
Number of Associated Samples	137
Number of Associated Scaffolds	153

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.73 %
% of genes near scaffold ends (potentially truncated)	97.39 %
% of genes from short scaffolds (< 2000 bps)	91.50 %
Associated GOLD sequencing projects	130
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Most Common Taxonomy
Group	Bacteria (55.556 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (7.843 % of family members)
Environment Ontology (ENVO)	Unclassified (30.065 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.137 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 37.66% β-sheet: 0.00% Coil/Unstructured: 62.34%
Feature Viewer

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Pfam ID	Name	% Frequency in 153 Family Scaffolds
PF00248	Aldo_ket_red	29.41
PF01380	SIS	2.61
PF13531	SBP_bac_11	1.31
PF04430	DUF498	1.31
PF13417	GST_N_3	0.65
PF09084	NMT1	0.65
PF04780	DUF629	0.65
PF13416	SBP_bac_8	0.65
PF01436	NHL	0.65
PF00557	Peptidase_M24	0.65
PF01547	SBP_bac_1	0.65
PF10518	TAT_signal	0.65
PF00005	ABC_tran	0.65
PF00528	BPD_transp_1	0.65

COG ID	Name	Functional Category	% Frequency in 153 Family Scaffolds
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	1.31
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	1.31
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.65
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.65

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.56 %
Unclassified	root	N/A	44.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.11 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.11 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.11 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.61 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.11 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.61 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0433722	Not Available	825	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104923462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1007354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2109	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1013231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1571	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10042199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1039	Open in IMG/M
3300000881\|JGI10215J12807_1483304	Not Available	667	Open in IMG/M
3300000890\|JGI11643J12802_10807368	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300001412\|JGI20173J14856_1012937	All Organisms → cellular organisms → Bacteria	1527	Open in IMG/M
3300001538\|A10PFW1_10778378	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300002503\|C687J35164_10156308	Not Available	658	Open in IMG/M
3300003321\|soilH1_10359226	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300003995\|Ga0055438_10052202	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300004020\|Ga0055440_10020085	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300004114\|Ga0062593_103353132	Not Available	514	Open in IMG/M
3300004633\|Ga0066395_10682412	Not Available	608	Open in IMG/M
3300004633\|Ga0066395_10853760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300005093\|Ga0062594_101859801	Not Available	637	Open in IMG/M
3300005093\|Ga0062594_103380166	Not Available	502	Open in IMG/M
3300005168\|Ga0066809_10035157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1076	Open in IMG/M
3300005187\|Ga0066675_10886352	Not Available	674	Open in IMG/M
3300005238\|Ga0073692_1019463	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300005334\|Ga0068869_101266194	Not Available	650	Open in IMG/M
3300005334\|Ga0068869_101720218	Not Available	560	Open in IMG/M
3300005338\|Ga0068868_100002400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12967	Open in IMG/M
3300005339\|Ga0070660_101563553	Not Available	561	Open in IMG/M
3300005354\|Ga0070675_100592894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1005	Open in IMG/M
3300005366\|Ga0070659_101325252	Not Available	639	Open in IMG/M
3300005367\|Ga0070667_100104615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2449	Open in IMG/M
3300005436\|Ga0070713_102455741	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005440\|Ga0070705_100186459	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300005456\|Ga0070678_100917265	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300005458\|Ga0070681_10312130	All Organisms → cellular organisms → Bacteria	1482	Open in IMG/M
3300005459\|Ga0068867_101925646	Not Available	558	Open in IMG/M
3300005471\|Ga0070698_101764100	Not Available	572	Open in IMG/M
3300005539\|Ga0068853_101159764	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300005540\|Ga0066697_10721122	Not Available	545	Open in IMG/M
3300005544\|Ga0070686_100120918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1798	Open in IMG/M
3300005545\|Ga0070695_100983232	Not Available	685	Open in IMG/M
3300005547\|Ga0070693_100565946	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300005563\|Ga0068855_100870109	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300005563\|Ga0068855_101786170	Not Available	625	Open in IMG/M
3300005564\|Ga0070664_100055168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3372	Open in IMG/M
3300005718\|Ga0068866_10135751	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300005764\|Ga0066903_102582630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	984	Open in IMG/M
3300006041\|Ga0075023_100629533	Not Available	503	Open in IMG/M
3300006058\|Ga0075432_10014661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2668	Open in IMG/M
3300006755\|Ga0079222_11034391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	711	Open in IMG/M
3300006804\|Ga0079221_10214341	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300006804\|Ga0079221_10551465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	763	Open in IMG/M
3300006804\|Ga0079221_10600144	Not Available	742	Open in IMG/M
3300006844\|Ga0075428_101546959	Not Available	694	Open in IMG/M
3300006871\|Ga0075434_100583708	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300006871\|Ga0075434_101160815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300006871\|Ga0075434_102241817	Not Available	550	Open in IMG/M
3300006904\|Ga0075424_100985672	Not Available	899	Open in IMG/M
3300006904\|Ga0075424_101457842	All Organisms → cellular organisms → Bacteria → Proteobacteria	727	Open in IMG/M
3300009029\|Ga0066793_10600853	Not Available	627	Open in IMG/M
3300009553\|Ga0105249_13245269	Not Available	523	Open in IMG/M
3300010043\|Ga0126380_11964337	Not Available	534	Open in IMG/M
3300010046\|Ga0126384_10344829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1239	Open in IMG/M
3300010046\|Ga0126384_10881210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	807	Open in IMG/M
3300010359\|Ga0126376_12037629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
3300010359\|Ga0126376_12415562	Not Available	573	Open in IMG/M
3300010360\|Ga0126372_12692270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300010366\|Ga0126379_12640008	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300010375\|Ga0105239_11281452	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300010398\|Ga0126383_11010576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	920	Open in IMG/M
3300012019\|Ga0120139_1221288	Not Available	504	Open in IMG/M
3300012907\|Ga0157283_10275922	Not Available	571	Open in IMG/M
3300012914\|Ga0157297_10000880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5952	Open in IMG/M
3300012931\|Ga0153915_13425042	Not Available	514	Open in IMG/M
3300012957\|Ga0164303_10408453	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300012957\|Ga0164303_10833982	Not Available	638	Open in IMG/M
3300012960\|Ga0164301_10945104	Not Available	673	Open in IMG/M
3300012984\|Ga0164309_10905940	All Organisms → cellular organisms → Bacteria → Proteobacteria	719	Open in IMG/M
3300012986\|Ga0164304_10492915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300012988\|Ga0164306_11214678	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300013102\|Ga0157371_11082326	Not Available	614	Open in IMG/M
3300013104\|Ga0157370_11063958	Not Available	731	Open in IMG/M
3300013307\|Ga0157372_10708205	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300013503\|Ga0120127_10003317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2553	Open in IMG/M
3300014270\|Ga0075325_1041193	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300015051\|Ga0137414_1175011	Not Available	6154	Open in IMG/M
3300015371\|Ga0132258_12173468	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300016341\|Ga0182035_10422770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1124	Open in IMG/M
3300016371\|Ga0182034_11021829	Not Available	715	Open in IMG/M
3300017994\|Ga0187822_10074621	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300020082\|Ga0206353_11586307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1012	Open in IMG/M
3300022737\|Ga0247747_1012345	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300022883\|Ga0247786_1001997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3825	Open in IMG/M
3300023064\|Ga0247801_1064830	Not Available	577	Open in IMG/M
3300025457\|Ga0208850_1046854	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300025888\|Ga0209540_10655216	Not Available	520	Open in IMG/M
3300025898\|Ga0207692_10275494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1016	Open in IMG/M
3300025921\|Ga0207652_10607137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	981	Open in IMG/M
3300025924\|Ga0207694_10359911	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300025932\|Ga0207690_10389509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1109	Open in IMG/M
3300025941\|Ga0207711_11207002	Not Available	698	Open in IMG/M
3300025942\|Ga0207689_10820462	Not Available	785	Open in IMG/M
3300025949\|Ga0207667_10882666	All Organisms → cellular organisms → Bacteria → Proteobacteria	887	Open in IMG/M
3300025949\|Ga0207667_12132821	Not Available	518	Open in IMG/M
3300026041\|Ga0207639_10564862	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300026067\|Ga0207678_11253049	Not Available	656	Open in IMG/M
3300026121\|Ga0207683_10034094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4423	Open in IMG/M
3300026272\|Ga0209913_1030451	All Organisms → cellular organisms → Bacteria	1376	Open in IMG/M
3300026711\|Ga0207489_100585	Not Available	721	Open in IMG/M
3300026733\|Ga0207550_100960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	814	Open in IMG/M
3300026741\|Ga0207510_101209	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300026829\|Ga0207580_1002916	Not Available	658	Open in IMG/M
3300026903\|Ga0207462_1000291	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300026927\|Ga0207744_1014895	Not Available	737	Open in IMG/M
3300027364\|Ga0209967_1051725	Not Available	631	Open in IMG/M
3300027437\|Ga0207476_106892	Not Available	560	Open in IMG/M
3300027445\|Ga0207554_101639	Not Available	729	Open in IMG/M
3300027448\|Ga0207446_100722	Not Available	698	Open in IMG/M
3300027479\|Ga0207636_1001356	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300027674\|Ga0209118_1050281	Not Available	1234	Open in IMG/M
3300027787\|Ga0209074_10255795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	682	Open in IMG/M
3300028379\|Ga0268266_10138740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2180	Open in IMG/M
3300028556\|Ga0265337_1227478	Not Available	507	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1000784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5334	Open in IMG/M
3300031249\|Ga0265339_10345046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	703	Open in IMG/M
3300031573\|Ga0310915_10245822	All Organisms → cellular organisms → Bacteria → Proteobacteria	1258	Open in IMG/M
3300031713\|Ga0318496_10542595	Not Available	643	Open in IMG/M
3300031744\|Ga0306918_10284193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1271	Open in IMG/M
3300031748\|Ga0318492_10292488	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300031781\|Ga0318547_10369454	Not Available	878	Open in IMG/M
3300031833\|Ga0310917_11006866	Not Available	558	Open in IMG/M
3300031835\|Ga0318517_10235735	Not Available	826	Open in IMG/M
3300031852\|Ga0307410_11722648	Not Available	556	Open in IMG/M
3300031858\|Ga0310892_10778251	Not Available	662	Open in IMG/M
3300031860\|Ga0318495_10538503	Not Available	508	Open in IMG/M
3300031910\|Ga0306923_10172544	Not Available	2469	Open in IMG/M
3300031939\|Ga0308174_11098272	Not Available	677	Open in IMG/M
3300031947\|Ga0310909_10360211	Not Available	1221	Open in IMG/M
3300031949\|Ga0214473_11546625	Not Available	667	Open in IMG/M
3300031954\|Ga0306926_10802402	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300031995\|Ga0307409_100316017	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300031995\|Ga0307409_101002746	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300031995\|Ga0307409_102230023	Not Available	577	Open in IMG/M
3300031996\|Ga0308176_10614161	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300032055\|Ga0318575_10662413	Not Available	528	Open in IMG/M
3300032074\|Ga0308173_11875769	Not Available	565	Open in IMG/M
3300032090\|Ga0318518_10396374	Not Available	708	Open in IMG/M
3300032094\|Ga0318540_10507875	Not Available	582	Open in IMG/M
3300032261\|Ga0306920_100733352	Not Available	1454	Open in IMG/M
3300032421\|Ga0310812_10051516	All Organisms → cellular organisms → Bacteria	1586	Open in IMG/M
3300033412\|Ga0310810_10578391	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300033433\|Ga0326726_12424886	Not Available	509	Open in IMG/M
3300033475\|Ga0310811_10430848	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300034125\|Ga0370484_0114502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300034195\|Ga0370501_0103134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	961	Open in IMG/M
3300034818\|Ga0373950_0007223	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.93%
Host-Associated	Host-Associated	29.41%
Engineered	Engineered	0.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Plants	Host-Associated → Plants	29.41%
Aquatic	Environmental → Aquatic	3.27%
Solid Waste	Engineered → Solid Waste	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.46%
Freshwater	Environmental → Aquatic → Freshwater	1.31%
Marine	Environmental → Aquatic → Marine	1.31%
Sediment	Environmental → Aquatic → Sediment	0.65%
Peat	Environmental → Terrestrial → Peat	0.65%
Grass	Engineered → Solid Waste → Grass	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.31%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.31%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.65%
Sand	Environmental → Terrestrial → Soil → Sand	0.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.65%
Composting	Engineered → Solid Waste → Grass → Composting	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	13.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.27%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.65%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.65%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.65%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.65%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.23%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.31%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.31%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.31%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.65%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.65%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.65%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.65%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.65%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.65%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.65%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.65%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.65%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001412	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002503	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005238	Microbial communities on the surface of aged kaolinite enhanced biochar from soil in Sydney, Australia	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014270	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026272	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 (SPAdes)	Environmental	Open in IMG/M
3300026711	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-10 (SPAdes)	Environmental	Open in IMG/M
3300026733	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-12 (SPAdes)	Environmental	Open in IMG/M
3300026741	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-C (SPAdes)	Environmental	Open in IMG/M
3300026829	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-11 (SPAdes)	Environmental	Open in IMG/M
3300026903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-11 (SPAdes)	Environmental	Open in IMG/M
3300026927	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes)	Environmental	Open in IMG/M
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated	Open in IMG/M
3300027437	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K2-12 (SPAdes)	Environmental	Open in IMG/M
3300027445	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K3-12 (SPAdes)	Environmental	Open in IMG/M
3300027448	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K5-12 (SPAdes)	Environmental	Open in IMG/M
3300027479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-11 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_04337221	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MSKSGLSRRTFVQGSVGLTVANFAPDTTPVAFAATTMEEQ
INPhiseqgaiiFebDRAFT_1049234622	3300000364	Soil	MTRRSISRRRFIEAGAGLTVANFLPGTTPFARAATMEEQTIAAAKK
AF_2010_repII_A100DRAFT_10073544	3300000655	Forest Soil	MSKLGLSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVSG
AF_2010_repII_A100DRAFT_10132315	3300000655	Forest Soil	MSKSGLSRRTFVQGSVGLTVANFAPDTTPVAFAATTMEEQTVA
AF_2010_repII_A001DRAFT_100421991	3300000793	Forest Soil	MSKSGLSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQT
JGI10215J12807_14833041	3300000881	Soil	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMIWSPYLVP
JGI11643J12802_108073681	3300000890	Soil	MSRSSFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAA
JGI20173J14856_10129373	3300001412	Arctic Peat Soil	MTKFSVSRRTFVEGGLGLTVANFLPGTMPFANAATMEESTIEAASG*
A10PFW1_107783781	3300001538	Permafrost	MTKFNVSRRTFVEGGLGLTVANFLPGTMPLASAATMEESTIVAAK
C687J35164_101563081	3300002503	Soil	MTKFSISRRTFMEGGVGLTVANFLPGTTPLAFAATMEERTIAAAKAVG
soilH1_103592261	3300003321	Sugarcane Root And Bulk Soil	MSRFEVSRRGFFSRGLGLTPGNFAPRSAPFAQAATMEEQTIAAAKKVGAANV
Ga0055438_100522021	3300003995	Natural And Restored Wetlands	MTKLDISRRNFVQGGVGLTVANFLPGTTPLAFGATMEEQTIAAAKK
Ga0055440_100200852	3300004020	Natural And Restored Wetlands	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGK
Ga0062593_1033531321	3300004114	Soil	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNG
Ga0066395_106824122	3300004633	Tropical Forest Soil	MSRSGFSRRTLLQGGVGLTVANFVPGTTPFALAATMEEQTIAAAKAVGKA
Ga0066395_108537601	3300004633	Tropical Forest Soil	MSKSGLSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVA
Ga0062594_1018598011	3300005093	Soil	MSRSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVN
Ga0062594_1033801661	3300005093	Soil	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVN
Ga0066809_100351571	3300005168	Soil	MYGSGFSRRTFLQSSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMIWSPYLVPMKPVIA
Ga0066675_108863522	3300005187	Soil	MSKSGLSRRTFVQGSVGLTVANFVPGTTPLAFAASMEEQTVAAAKTVGK
Ga0073692_10194631	3300005238	Soil	MSKLDISRRGFVQGGLGLTIANFVPGTAPLAQAATMEENTIAAAKTAGPAAVNGMI
Ga0068869_1012661941	3300005334	Miscanthus Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMI
Ga0068869_1017202182	3300005334	Miscanthus Rhizosphere	MSRSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAK
Ga0068868_10000240013	3300005338	Miscanthus Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAK
Ga0070660_1015635532	3300005339	Corn Rhizosphere	MSKFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKTVGKADVNGMIWSPYLVPM
Ga0070675_1005928941	3300005354	Miscanthus Rhizosphere	MSRSSFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIWSP
Ga0070659_1013252522	3300005366	Corn Rhizosphere	MSRFEVSRRGFIESGLGLTVANFLPGSAPFANAATMEEQTIAAAKKVGAANVNGMIWSPY
Ga0070667_1001046153	3300005367	Switchgrass Rhizosphere	MSRSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGK
Ga0070713_1024557412	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTKRSISRRGFIGAGAGLTVANFLPGTTPFAFGATMEEQTIAAAKK
Ga0070705_1001864591	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIA
Ga0070678_1009172652	3300005456	Miscanthus Rhizosphere	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIW
Ga0070681_103121301	3300005458	Corn Rhizosphere	MGKFDISRRSFVGGGLGLTVANFVPGTTPLALAATMEEQTIAAAKKVGTAKVNGMIWSPYFV
Ga0068867_1019256461	3300005459	Miscanthus Rhizosphere	MSRSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIW
Ga0070698_1017641001	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIW
Ga0068853_1011597642	3300005539	Corn Rhizosphere	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGK
Ga0066697_107211221	3300005540	Soil	MSKSGLSRRTFVQGSVGLTVANFVPGTTPLAFAASMEEQ
Ga0070686_1001209181	3300005544	Switchgrass Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQT
Ga0070695_1009832321	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMIWSPYLVPMKPVI
Ga0070693_1005659461	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSGFSRRTFLQGGVGLTVANFVPGTTPFAHAATMEEQTI
Ga0068855_1008701092	3300005563	Corn Rhizosphere	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAK
Ga0068855_1017861701	3300005563	Corn Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAGTMEEQTIAAAKAVGKADVNGMIW
Ga0070664_1000551681	3300005564	Corn Rhizosphere	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQ
Ga0068866_101357511	3300005718	Miscanthus Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKA
Ga0066903_1025826301	3300005764	Tropical Forest Soil	MSKSGLSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVG
Ga0075023_1006295332	3300006041	Watersheds	MTKFSVSRRTFVEGGLGLTVANFLPGTMPFASAATMEESTIAAAKSAGPAAVNGMIWS
Ga0075432_100146611	3300006058	Populus Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQPIAAAKAVGKADVNGMIWSPY
Ga0079222_110343912	3300006755	Agricultural Soil	MTKRSMSRRHFIEAGAGLTVANFLPGTTPLARAATMEEQTIAAAKKAGAAQVNG
Ga0079221_102143411	3300006804	Agricultural Soil	MGKFDVSRRAFVEGGLGLTVANFIPGTAPFAEAATMEESTI
Ga0079221_105514651	3300006804	Agricultural Soil	MTKRSMSRRHFIEAGAGLTVANFLPGTTPFARAATMEEQTIAAAKKAGVAQVNGMIWSPY
Ga0079221_106001441	3300006804	Agricultural Soil	MSKFELSRRGFIEGGLGLTVANFMPGSAPFASAATMEEQTIAAAKKV
Ga0075428_1015469591	3300006844	Populus Rhizosphere	MSRSGFSRRMFLQGSVGLTVANFVPGTAPFAHAATMEEQTIAAAKAVG
Ga0075434_1005837082	3300006871	Populus Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQ
Ga0075434_1011608152	3300006871	Populus Rhizosphere	MTMRSMSRRHFVGAGAGLTIANFLPGTSPLAHAAGMEEQTIAAAKK
Ga0075434_1022418171	3300006871	Populus Rhizosphere	MTKRSMSRRRFIEAGAGLTIANFLPGTTPLAFAATMEEQTIAAAKKAGAAQVNGMI
Ga0075424_1009856722	3300006904	Populus Rhizosphere	MTKSTLSRRGFIEGSVGLTVANFLPGTTPLAFAATMEER
Ga0075424_1014578421	3300006904	Populus Rhizosphere	MTMRSMSRRRFIEAGAGLTVANFLPGTAPFAHAATMEEQTIAAAKKAGAAQVNGMIWSP
Ga0066793_106008531	3300009029	Prmafrost Soil	MTKFSVSRRTFVEGGLGLTVANFLPGTMPFANAATMEESTIAAAKSA
Ga0105249_132452692	3300009553	Switchgrass Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFASAATMEEQTITAAKAAGKADVN
Ga0126380_119643371	3300010043	Tropical Forest Soil	MSRSGFSRRTLLQGGIGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADV
Ga0126384_103448291	3300010046	Tropical Forest Soil	VQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVSGMIWSPYFVPMQPVIA
Ga0126384_108812102	3300010046	Tropical Forest Soil	MTRRSISRRRFIEAGAGLTVANFLPGATPFARAATMEEQTIAAAKKAGAAQVNGMI*
Ga0126376_120376291	3300010359	Tropical Forest Soil	MTMRSMSRRRFIEAGAGLTVANFLPGTTPFAHAATMEEQTIAAAKKAGAAQVNGMIWSP
Ga0126376_124155621	3300010359	Tropical Forest Soil	MSKSGFSRRTFLQGSVGITVANFVPGTTPFAHAATMEEQTIAAAK
Ga0126372_126922701	3300010360	Tropical Forest Soil	MTWSISRRNFIEGGVGLTVANFLPGTAPLAFAATMEEQTVTAAKSV
Ga0126379_126400082	3300010366	Tropical Forest Soil	MKQRISRRTFVHGSIGLTVANFLPFGSKRAFAATLEERVVDAA
Ga0105239_112814522	3300010375	Corn Rhizosphere	MSRSSFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKA
Ga0126383_110105761	3300010398	Tropical Forest Soil	VQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVSGMIWSPY
Ga0120139_12212881	3300012019	Permafrost	MTKFGISRRTFVEGGLGLTVANFLPGTTPFAAAATMEESTVAAAMSV
Ga0157283_102759221	3300012907	Soil	MYKANTGEEEIMSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIWS
Ga0157297_100008801	3300012914	Soil	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIA
Ga0153915_134250421	3300012931	Freshwater Wetlands	VEGGLGLTVANFLPGTAPFASAATMEESTVAAAKSAGPAAVNGMIWSPYLVPM
Ga0164303_104084532	3300012957	Soil	MSSSGFSRRTFLHGSVGLTVANFLPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIWS
Ga0164303_108339821	3300012957	Soil	MKTNTREEPIMSKFSRRTFLQGSVGLTVANFVPGTSPFAHAATMEEQTIAAAKTVGKADVNGMIWSPYLVPM
Ga0164301_109451041	3300012960	Soil	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAV
Ga0164309_109059402	3300012984	Soil	MSMSGFSRRTFLQGSVGLTVANFVPGTTPFASAATMEEQTITAAK
Ga0164304_104929153	3300012986	Soil	MSKFSRRTFLQGSVGLTVANFVPGTMPFAQAATMEEQTITAAKTAGKA
Ga0164306_112146782	3300012988	Soil	AASNRGRERPQREDVMSKFGVSRRGFIEGGLGLTVANFLPGSAPFANAATMEEQTIAAAKKVGAANVNGMIWSPY*
Ga0157371_110823261	3300013102	Corn Rhizosphere	MSRSGFSRRTFLQGSVRLTVANFVPGTTPFAHAATMEEQTIAA
Ga0157370_110639582	3300013104	Corn Rhizosphere	MSRFEVSRRGFIEGGLGLTVANFMPGSAPFASAATMEEQTIA
Ga0157372_107082052	3300013307	Corn Rhizosphere	MSKFEISRRGFIEGGLGLTVANFMPGSAPFANAATME
Ga0120127_100033171	3300013503	Permafrost	MTKFSISRRTFVEGGLGLTVANFLPGTTPFAAAATMEESTVA
Ga0075325_10411932	3300014270	Natural And Restored Wetlands	MTKSKISRRTFVQGGVGLTVANFVPGTTPLAFAATLEERVVAAAKPLGKTG
Ga0137414_11750117	3300015051	Vadose Zone Soil	MTKLDISATDLLQGSAGLAVTSLLPGTTPFANAATMEESIIAAAEAAGPAAVTA*
Ga0132258_121734681	3300015371	Arabidopsis Rhizosphere	MSRSGFSRRTLLQGGVGLTVANFVPGTTPFAHAATMEEQTIAAAKA
Ga0182035_104227703	3300016341	Soil	MSKSGLSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVS
Ga0182034_110218291	3300016371	Soil	MSKSGLSRRTFVQGSLGLTIANFVPDTTPLAFAATMEEQTVAAAKTVGKADVSGMIWSPY
Ga0187822_100746212	3300017994	Freshwater Sediment	MSRSGFSRRTFLQSSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIWS
Ga0206353_115863071	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MSKFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKTV
Ga0247747_10123452	3300022737	Soil	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMIWSPYLV
Ga0247786_10019971	3300022883	Soil	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMIWSPY
Ga0247801_10648301	3300023064	Soil	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAA
Ga0208850_10468541	3300025457	Arctic Peat Soil	MTKFSVSRRTFVEGGLGLTVANFLPGTMPFANAATME
Ga0209540_106552161	3300025888	Arctic Peat Soil	MTKFSVSRRTFVEGGLGLTVANFLPGTMPFANAATMEES
Ga0207692_102754942	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFASAATMEEQTITAAKA
Ga0207652_106071373	3300025921	Corn Rhizosphere	MSKFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKTVGKADVNGMI
Ga0207694_103599113	3300025924	Corn Rhizosphere	MSKFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKTVGKADVNGMIWSP
Ga0207690_103895092	3300025932	Corn Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIWS
Ga0207711_112070021	3300025941	Switchgrass Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMIWSPY
Ga0207689_108204622	3300025942	Miscanthus Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMIW
Ga0207667_108826662	3300025949	Corn Rhizosphere	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADV
Ga0207667_121328211	3300025949	Corn Rhizosphere	MGKFDISRRAFVEGGLGLTVANFVPGTTPFAQAATMEENTIATQA
Ga0207639_105648622	3300026041	Corn Rhizosphere	MSKLDISRRGFVQGGLGLTVANFVPGAEPFAQAATMEEDTIAA
Ga0207678_112530492	3300026067	Corn Rhizosphere	MGKFDVSRRSFVGGGLGLTVANFVPGTTPLALAATMEE
Ga0207683_100340946	3300026121	Miscanthus Rhizosphere	MSSSGFSRRTFLHGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIWSPY
Ga0209913_10304511	3300026272	Soil	MTKFSVSRRTFVEGGLGLTVANFLPGTMPFANAATMEESTIAAAKSAGPAAVNGMIWSPYLVPM
Ga0207489_1005852	3300026711	Soil	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVN
Ga0207550_1009601	3300026733	Soil	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNG
Ga0207510_1012092	3300026741	Soil	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAV
Ga0207580_10029161	3300026829	Soil	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGK
Ga0207462_10002911	3300026903	Soil	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGKADVNGMIW
Ga0207744_10148951	3300026927	Tropical Forest Soil	MTRFKISRRTFVEGGLGLTVANFLPGTTPFASAATMEESTIAAAK
Ga0209967_10517252	3300027364	Arabidopsis Thaliana Rhizosphere	MSGSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATM
Ga0207476_1068921	3300027437	Soil	MSRSSFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAK
Ga0207554_1016391	3300027445	Soil	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATM
Ga0207446_1007221	3300027448	Soil	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNGMIW
Ga0207636_10013561	3300027479	Soil	MHKDNTGEEEVMSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGK
Ga0209118_10502813	3300027674	Forest Soil	MTKPTMSRRTFIEGGLGLTVANFVPGSTPLAFAATPEERVIAAAKPLGGGEVSGMIW
Ga0209074_102557951	3300027787	Agricultural Soil	MTKRSMSRRHFIEAGAGLTVANFLPGTTPLARAATMEEQTIAAAKKAGAAQV
Ga0268266_101387401	3300028379	Switchgrass Rhizosphere	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAA
Ga0265337_12274781	3300028556	Rhizosphere	MAKLDISRRNFVQGGVGLTVANFLPGTTPFAHAATMEESTIAAAKAAGPAAVNGMIWSPY
(restricted) Ga0255311_10007841	3300031150	Sandy Soil	MSRSSFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAVGK
Ga0265339_103450461	3300031249	Rhizosphere	MTKFSVSRRTFVEGGLGLTVANFLPGTMPFASAATMEESTVAAAKSAGPAAVN
Ga0310915_102458223	3300031573	Soil	MSKLGLSRRTFVQGSVGLAVANFVRGTTPLAFAATMEEQTVAAAKTVGKADVSG
Ga0318496_105425951	3300031713	Soil	MSKLGLSRRTFVQSSVGLTVANFVPGTTPLAFAATM
Ga0306918_102841931	3300031744	Soil	MSKSGLSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVSGMIWSPYFV
Ga0318492_102924882	3300031748	Soil	MSKLGLSRRTFVQSSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVSGMIW
Ga0318547_103694542	3300031781	Soil	MSKLGFSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKT
Ga0310917_110068661	3300031833	Soil	MSKSGLSRRTFVQGSLGLTIANFVPDTTPLAFAATMEEQTVAAAKTVGKAD
Ga0318517_102357351	3300031835	Soil	MSKLGLSRRTFVQGSVGLAVANFVRGTTPLAFAAT
Ga0307410_117226481	3300031852	Rhizosphere	MSKFDVSRRTLVKGGLGLTVANFVPGTTPFAAAATMEESTIAAAKGLAP
Ga0310892_107782511	3300031858	Soil	MYGSGFSRRTFLQSSVGLTVANFVPGTTPFAHAATMEEQTIAAA
Ga0318495_105385031	3300031860	Soil	MSKLGLSRRTFVQGSVGLAVANFVRGTTPLAFAATMEEQTVAAAKTVGKAD
Ga0306923_101725441	3300031910	Soil	MSKLGLSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTV
Ga0308174_110982721	3300031939	Soil	MSKFEVSRRGFVEGGLGLTVVNLLPGSASLALAATMEEQTIAAGKKAGAANVNGMIW
Ga0310909_103602111	3300031947	Soil	MSKSGLSRRTFVQGSLGLTIANFVPDTTPLAFAATMEEQT
Ga0214473_115466251	3300031949	Soil	MRTGLITRRYLVQGGLGFTVASFVPWGGFPRAFAATPEERIAAAAKPLGKTDVR
Ga0306926_108024023	3300031954	Soil	MSKSGLSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVSGMIWS
Ga0307409_1003160171	3300031995	Rhizosphere	MSNFNVSRRTFVNSGLGLTVANFIPGTTPFAAAATMEES
Ga0307409_1010027462	3300031995	Rhizosphere	MSKFNVSRRTLVKGGLGLSIANFVPGTTPFAAAASMEESTIAAAKGVTPAAVNGM
Ga0307409_1022300232	3300031995	Rhizosphere	MSKFNVSRRTLVKGGLGLSIANFVPGTTPFAAAATMEESTIAAAKSVTPAA
Ga0308176_106141612	3300031996	Soil	MGKFDISRRAFVEGGLGLTVANFVPGTAPFAEAATMEENTIAAAKKVGAANVNGMIW
Ga0318575_106624131	3300032055	Soil	MSKLGLSRRTFVQGSVGLAVANFVRGTTPLAFAATME
Ga0308173_118757692	3300032074	Soil	MGKFDFSRRAFVEGGLGLTMANFIPGTAPFAEAATMEENTIAAAKKVGAAKVNGMIWSPY
Ga0318518_103963742	3300032090	Soil	MSKLGFSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVSGMIWSPYFVPMQ
Ga0318540_105078751	3300032094	Soil	MSKLGFSRRTFVQGSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKADVSGMIW
Ga0306920_1007333523	3300032261	Soil	VSKLGLSRRTFVQSSVGLTVANFVPGTTPLAFAATMEEQTVAAAKTVGKAD
Ga0310812_100515161	3300032421	Soil	MSKFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAA
Ga0310810_105783912	3300033412	Soil	MSKLDISRRGFVQGGLGLTVANFVPGAAPFAQAATMEEDTIAAAKTAG
Ga0326726_124248861	3300033433	Peat Soil	MTKFSVSRRTFVEGGLGLTVANFLPGSTPFASAATIEEGTIAAAKKVGAAQV
Ga0310811_104308481	3300033475	Soil	MSRSGFSRRTFLQGSAGLTVANFVPGTTPFAHAATMEEQTIAAAKA
Ga0370484_0114502_569_709	3300034125	Untreated Peat Soil	MTKFSVSRRTFVEGGLGLTVANFLPGTMPFASAATMEESTVAAAKTA
Ga0370501_0103134_1_126	3300034195	Untreated Peat Soil	MKNLDLSRRTLLQGSAGFAAANLLPGTTPFAHAATMEESTIA
Ga0373950_0007223_1_111	3300034818	Rhizosphere Soil	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATME

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters