3300026820: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-A (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026820
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091534 | Ga0207603
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-A (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32821786
• Sequencing Scaffolds: 48
• Novel Protein Genes: 51
• Associated Families: 50

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	12
All Organisms → cellular organisms → Bacteria	13
Not Available	6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp.	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → unclassified Thiotrichales → Thiotrichales bacterium HS_08	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Candidatus Afipia apatlaquensis	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000120	Metagenome / Metatranscriptome	2081	Y
F000146	Metagenome / Metatranscriptome	1918	Y
F000268	Metagenome / Metatranscriptome	1411	Y
F001033	Metagenome / Metatranscriptome	799	Y
F001218	Metagenome / Metatranscriptome	745	Y
F001263	Metagenome / Metatranscriptome	735	Y
F001496	Metagenome / Metatranscriptome	683	Y
F001985	Metagenome / Metatranscriptome	608	Y
F002603	Metagenome / Metatranscriptome	544	Y
F003416	Metagenome / Metatranscriptome	488	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207603_100054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2007
Ga0207603_100088	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1756
Ga0207603_100099	All Organisms → cellular organisms → Bacteria	1691
Ga0207603_100130	All Organisms → cellular organisms → Bacteria	1574
Ga0207603_100168	Not Available	1482
Ga0207603_100206	All Organisms → cellular organisms → Bacteria	1416
Ga0207603_100241	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1356
Ga0207603_100268	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1319
Ga0207603_100388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1204
Ga0207603_100493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1136

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207603_100054	Ga0207603_1000543	F018820	MLRAAFLSAAVLACAPALAQNYGGTYTAKNASGGNVMLTLTQDGNKRVSGTLTGHGNNSLQVQARAESEGLRGTAANSFGMLYLTGRLDGDELSIVLTESDLGGKPNPQRARELRLAKLPAKLAVQDGELSRALTRNAWCSFASSSCRARITIMSIRRSFSSVTT
Ga0207603_100088	Ga0207603_1000882	F004992	MSNETPAAIDPDMFAAVFSENWDNARYIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLVGLLTSLRLKSELEECLAKIEAMTVQAKVSQFVALGQLEGKPSRYPRFRWIFPIFYTMTTAGFIALIVYRLVTGEAMK
Ga0207603_100099	Ga0207603_1000994	F044133	MTATAVRFPDECVKLDNVEERRVLTDLEVIYEGGSLHGETADFPSRDPERVVVGLHLRNWNFFETYKRTI
Ga0207603_100130	Ga0207603_1001302	F001218	MRWVLSAADPLTAVNGALFSALVAAFVIDSAFAKSVTAGTVTFVSPCECQGQKSGSRWPVKTDPSPGPLDKSTIQAVTPSQIYEWKGPGPDVPLTPKTDTRIAAEQKWYNLTGRLVGVKVEDDGDITLVLKDAEGKKAGSVGAEIPVGSTWCELRQTVFGWTTQSFPFSFKDSQKLEMRETHVITVTGQAFFDVD
Ga0207603_100168	Ga0207603_1001683	F069377	LSPTTTKPTFEAATVVALKMQNDTRRMEIRFADDAGTEQVVSLPIAAALELARLTLDASAFLTRLKEGPAPR
Ga0207603_100206	Ga0207603_1002062	F000268	MRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYTGFATDGHGGSSGVTFGFDKNGRMIFPDSFDP
Ga0207603_100241	Ga0207603_1002412	F006714	LIREICLIRRDFIDTWLKAFAATNVRFDVDTQNAARRVVESFFDNVIIEATVQFVEEHQEAVCEVDARLKPSVPRNAEFVQRITHLLREPLGPLLLGLEVLLREESLSPRGVEMIGLLHRGVKKEADAIEELLRSTELLEKDAVKNR
Ga0207603_100268	Ga0207603_1002682	F001496	MAILEKTIRFAAIALAVLFIGLSLFGIFGAWFVDRKATDVALKGFGLIEVGIGVVDAGVGRVDDLIARSRTEVRQASETITAAGAQAQANSPVLNALNERLETSLAPRIAQMQQVLAPVRDAVGTVGNAVSLLNSMPMMADRAPRLAALDEAFNRLEELSADTTQLRGTLRTLVVEQKSDIAPGTVAALKGLTQRIDTRLGEVHANVQAVRADVAALQVRLDKRKSRLLFVFNLLALLSTLMLAWIIYTQVVVIQHHWARVRSP
Ga0207603_100388	Ga0207603_1003881	F001033	MCGHSLIARLTIAVFVFLMLGVTSVVHAERPDSTPGTSNAGTRKLFIGPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGQAVTHKDGRTHIVLGRATPSSRD
Ga0207603_100388	Ga0207603_1003882	F002603	MTAIAVRFPDESVELDNVEEHRVLTTLEVIYEGGSLHGKTADFPTRDVERVVVGLHLPNWHFFETYKRAICVDIRSQRTIFGYAGTLNPNNQQFGGRGCSQCFAFAK
Ga0207603_100493	Ga0207603_1004931	F003416	MDPLTFASSQKQESDSAAERRWENEGGKPGQLQQLPCDDRKEDATTGPAQGALKAFCYQD
Ga0207603_100669	Ga0207603_1006691	F056978	MRRTLKRTKSKKQQGRVRDLKPVKEAKGSGKIEHAVEHHETAVTEDAKELKKLREEVTQIKSDIANILEALQTLEAWVPMSRAEIPQYAWAYRKFVDISTRLRQEARSR
Ga0207603_100766	Ga0207603_1007661	F026527	AGIEIYKLPPTLSKETFEKTEGPYRSGVTKKYSNKRSGEKIAKFKAGTMAQSGLACFHISRLLGHLVEVPPALYRTMDLQEFQKVGDQARTTGHPSCTQAWADLRAMAKSGSSKLILPDGKTVYGSLAQNPRGEDSSPEDYWTVGAIRGHSFYKVLSSKSSVANILNLNDPKCLQDLALAQDMIRGVILDSIFRQVDRLGNISVDQLQHYVDRNGKVKWDDKLSDKDKADAVSPIFALKRIMYKDNDDGMMWGMNSISVTPILNEAHHVDKTIYNRLQWLAGLMQDSEPGSDAKIKNYFVNVVHISGDNYDKLKASLLKQASSLKSRVDAKDILVD
Ga0207603_100895	Ga0207603_1008952	F062737	VFQTPAEPPNHGRICLAMIGWTRNSRNDERKVVAAYGSVATRE
Ga0207603_101075	Ga0207603_1010751	F091232	MSNGIVSLTLGVFLLLVGGCGQKGGIEGEYVDVDSPDLSMIISGGRFQQGGADIHTTGTYTMRQINANTYELEVSYTNSKLQGHKSTITIVRDGDFITAKNRYEERKFKRK
Ga0207603_101295	Ga0207603_1012951	F000120	MKRYSSIIHIVIAACACLIFAGCAANQATAPIPPNSGHLLINRVANFGSNLSLVVSVDGKDVGSFTEGRSYSGYLTAGQHHIVVRVDPNPGGKRPGHKTLTVQAGQTYSYTAGWSG
Ga0207603_101296	Ga0207603_1012961	F041956	VLKKVALPSALRYQSRTMKQKLVVLLVLTLSAWFPVFGAADTPETRRKEAERYLQVSPPKALFEDMADKMAETLPADQRDQFKKL
Ga0207603_101360	Ga0207603_1013601	F046663	MEDLDLNQPAIVFWMHDPGEITRFDRLEDAVHSVMVKPSAKLFSIAWIKAGDRHIEMEEIRQIARRSILSRYLANP
Ga0207603_101397	Ga0207603_1013972	F051384	MKTKSKTTAYVVHSIAVAVLVLTAQISQAGSATWLSSPQDSAWENANNWTPGGPPSGPFDIATFAQSSQTDVNIS
Ga0207603_101506	Ga0207603_1015061	F004468	MTTRRAAAVFCFANYESTTISKKTLCQLQDCEAQERCARDLQKPAAQATPG
Ga0207603_101511	Ga0207603_1015111	F001033	MCGPSLIVRLTIAAFVFLILGVTSVIHAERPDSTAGTSNAGKRKLFIDPSSTSVALRGKASLIVSPLAHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGQAVTHKDGRTHIVLGRATPSSRD
Ga0207603_101519	Ga0207603_1015192	F017924	MKTYNSITHILSLACAGLIAAYAANQAAAAPNSGHLVIDRVANFGSDLGLVVSIDGKDVGSFSEGRKYSGDLPAGEHTIIVRVDPNLNDAKPAQTKLNVVAGEKYSYTAGWSGQDMALTK
Ga0207603_101626	Ga0207603_1016262	F105011	MVLDLKIADIVDAHGVELADVVAAYERKMDAMRVKLKKIRKYAISQEAWYHYAVGSIVTLVAILIAFVVGFKF
Ga0207603_101633	Ga0207603_1016331	F021254	KMCAKVRMISRYLLVSCGLMLVSFVHASSLPADGGEPGKAYKACVDAVAKPDKAAMVALCFAKDDPWIKKTNVDYFTNETFQVAVRIEWPALRLIDVKITGGQLTGDDAEISVQGTMLLQREEPTGDIVEVDRYPVKGTVKLQRRDGVWRYAGTEKLER
Ga0207603_101700	Ga0207603_1017002	F099806	KTGALAWTGLVDTKQNDKLDAAMTQYINVVFDAMVADKVL
Ga0207603_102473	Ga0207603_1024732	F004536	PDSTDSSLSETMAARIEIKELGDPAHQKKITDAVEALGGVIETKIAKGALHVSYDPLTTTEKKIEQAIRSTGTTIKAAATDTEGAHPDLPTPNVQQAFVQNADKGGDSNPS
Ga0207603_102610	Ga0207603_1026102	F055942	IPAHRARRQPVDVRYLPTQGGVRLVVACNLKRAILLELFDHRIGHQDFDARYERAILKRRHRNGVNVPEIVRLYRPDVISKATGDREAKDCRK
Ga0207603_102617	Ga0207603_1026171	F005683	SQELKSVGKGTIFCDGEKEIKDVRINFFVSNHKGTSFAEWNIDHPKLGSAGGIISNIKTSSDNFVLKGVEAFDNICKNETPSDINLSGSCGAGTVKLVSDNGNKGSFSSDVKCSXFSWILDEIIKSNQYDLDYGR
Ga0207603_102630	Ga0207603_1026301	F049813	LNLTLEKNSMIKVKQLSYALLLGGIAITAAYSQDSASEYVAPP
Ga0207603_102705	Ga0207603_1027051	F019348	MPEELDFSKPEHAAGSTMAAFALAQISFSALVTNEIIPKTDAEKMLRQLVKANETGQPANQVAAALLTVVLQSVSAFQPATRQ
Ga0207603_102937	Ga0207603_1029371	F041998	RLIHVDHEMSIALSAGQNILELLEERLSPLRVGPAEQLLGLLPRQLAAVQDRADRLATAPQPKALADPMDEAAQGPARGWISPFEGWGGRRALGGADHLAELGFALWAKRGRRPPVRRNASASGPP
Ga0207603_103152	Ga0207603_1031521	F062100	TIITDVRQRFGDMIRDEKASLRERESGIEDDAPFVGWEKSFAFRCPSVDRRQFALLLFQTLGVSVRQGLEINGQTIFGGIAPSVDFESRILGSGPEAHQDRSAIARWNGNVMLIHPNVLQESNILRVRAAEMTAGNVDDFVMDNVVVVFKTGRSALVNSGSVAATAKPRKKKRAAKPAKKRR
Ga0207603_103293	Ga0207603_1032932	F038787	MISFTPWYIIIGEFGIALALTLLARTLRRGSWRAAILAGLAGGLLIFVCYAVAFLITDRV
Ga0207603_103771	Ga0207603_1037711	F058962	QASTDSNGVPSYQYGTTVRNFSGSTTDTIVGTADFGSIDQTNRKITVRVSTTRLNAILTAAGRPRIVSGSTLCGLRGRTFELSELALEDFTRGGTEFKVK
Ga0207603_103784	Ga0207603_1037841	F049873	MLIAAARRLENTTTLFARKREFGFVCPSFSIGVSGDGFLLPRSAKQLLRRSLIAVKVPTRDITGRYFMAIHHQGAQVCNVAVIVAWASHPSHASAFLAVKAPDEHKLQRSLKSLSGEDVELVFRPRLAPHMARPAGLRA
Ga0207603_104765	Ga0207603_1047651	F010126	MKSTKRLLIICTCVCMAALLQIVIESQTVTAIDVPASSTNNNNYGFQLESNVTNSSSNEVVYRNPQHGIFMLFPSNWTFSTSGLPQYTQVAAFYAPLQNLSDLIPARFTITVMSYQQNVSLKEFTNMTLSSLNETNQVKILSSNPTTLAGQPGYQVVFSTLPNMGSPVSFKIMHSW
Ga0207603_104887	Ga0207603_1048871	F015409	LPLSNMKDLLSSVWRTVIRATYRKHDPFLVYSITSFNSGGGWKEFFLKASLQNT
Ga0207603_105011	Ga0207603_1050112	F006654	MKPQTEIKKLRLTLALIAIFSLCAAASAQAGFNSFRPVGITFGQTARVTAANTGTRAIIISGTFLDSEGTVLAQFDRQVIEPGKMMSFDLNADDIVRESNRIEIRVVLSGDSLRGLVASTEVFENDTGKTTVFLGGPDT
Ga0207603_105110	Ga0207603_1051102	F072399	MQAQATSAAVCPECGTRLEEGFSRGLRRCMICLLRVGFDEAEEPDETLFAPVA
Ga0207603_105217	Ga0207603_1052171	F032737	LPDERTERSPTPRAPKTAVLLMAVIVICLAILAVFANVQRARRDAVEVVAVRSTTSPTPQER
Ga0207603_105307	Ga0207603_1053072	F001985	EVRVLQRTRFGIKAKAVVDIKAVMRTPGSNPQQATIEYSSYDDKTPMMEGGPQYQLRPGVSVIAFANSFDASIPPGYLLQGSRQELLQRVEALRGALGRMSPDQLKMNEITEDDRRVQMSLYEKLAAFLRAAK
Ga0207603_105366	Ga0207603_1053662	F061737	GFAPGTKVTLVEEANSVSTVTDGDYQFKVPSSQLTNDLDVAASVASDDYAKQAQIAELTAKRAQQYSQQQRDAFIASEKEKAQKKTGKKTPRRPSPTPRH
Ga0207603_105470	Ga0207603_1054701	F013204	VTVDRAPNFGWNLAFNLQIDGRPVTNLAQGHTYNTWLSAGPHTLTVEKVPAVGYTVPTSTTVTIQPGAEYLFVAMWDSGLVYLQPAGAWLTPGANW
Ga0207603_105472	Ga0207603_1054722	F070384	KFCDANFPVLAGAFVVYSSRAVAPLLLDTGPPRAFSFAELILQSSLLAHAPPARV
Ga0207603_105576	Ga0207603_1055761	F001263	MSERLAQPLLLEGLILLAVKVVQAQAPEDPIYVKTSNGWNGAYAHDNEYAEFRVIGNGAKLQDPYHILLQKNVGMMVSFVDKKELQNDTDLLSAHAQWEINYWHQHASRVESDTREDLTGTRKDVKVTEIRVYNDKGAQLSSYLIGLAAKDGVFALSVSSPAK
Ga0207603_105962	Ga0207603_1059621	F030581	MKTRRESRRRVSRFTIMVAKFLHIPDGAAVYVIWAAWIAVVIIIGIIVMLWR
Ga0207603_106079	Ga0207603_1060791	F039209	MLAGLVINLIASILISYGRIFRTKKTIEKESQTRGEENIYEEKHRLLETRVAQLGAILLAIGFAVQIWGNLADS
Ga0207603_106093	Ga0207603_1060931	F094959	DALKKLAAHIGKTFWSPPEKRLVRATTYQKGKDGSGSRKNISNATISLLRYATAKEAGTIAVPQWLPRGSMVKIQTQQGVYAYIASDNGGDVDNRKAAQSSGKTIEQRGATVLDFCAPKQLWPDFIIVEIYYYVGKVPFDKLSLEDQKTLFAYAMEYVTKRE
Ga0207603_106811	Ga0207603_1068111	F044561	MPVQHTYTMKAGTKSKLLLVYATAADSTSGKTGLTKNPSAGNAAYIREGDSTARPVPIIEGRVGEWGSGTLAEVDPELVPGLYQFGAPDEMIAEGSARAVLLIRFPDTVIKPVEINLVAYDPQ
Ga0207603_107066	Ga0207603_1070661	F000146	MAIVRLVTFDGVTTDRMNQMRDEMQGREPPEGLNAKEIIVLHDPDTERSTVLVFFDNEDDYRQGDEILSNMDRGDTPGARTSVTRYDV
Ga0207603_107094	Ga0207603_1070941	F084893	LALWEPFQQCLSKHLSELTEGQIDREEKFWFEAAHVNTMIAVVEAEEVTAAPDLRNWLISLAAFARRALDRRVGVVFVIS