3300026763: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026763
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072092 | Ga0207568
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23804205
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000466	Metagenome / Metatranscriptome	1105	Y
F006715	Metagenome	366	Y
F015727	Metagenome / Metatranscriptome	252	Y
F020518	Metagenome / Metatranscriptome	223	Y
F024579	Metagenome / Metatranscriptome	205	Y
F036579	Metagenome	169	Y
F041502	Metagenome / Metatranscriptome	160	Y
F045182	Metagenome / Metatranscriptome	153	N
F045783	Metagenome / Metatranscriptome	152	Y
F072075	Metagenome	121	Y
F075371	Metagenome / Metatranscriptome	119	Y
F083875	Metagenome / Metatranscriptome	112	N
F085321	Metagenome	111	Y
F093960	Metagenome / Metatranscriptome	106	Y
F094081	Metagenome / Metatranscriptome	106	Y
F101460	Metagenome	102	N
F103530	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207568_100524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	977
Ga0207568_101557	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	756
Ga0207568_102881	Not Available	644
Ga0207568_102971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637
Ga0207568_103406	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	615
Ga0207568_103904	Not Available	590
Ga0207568_104036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	585
Ga0207568_104353	All Organisms → cellular organisms → Bacteria → Acidobacteria	572
Ga0207568_104503	Not Available	567
Ga0207568_105082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547
Ga0207568_105464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	534
Ga0207568_105621	Not Available	530
Ga0207568_106387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508
Ga0207568_106547	All Organisms → cellular organisms → Bacteria	504
Ga0207568_106632	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207568_100524	Ga0207568_1005241	F101460	MEAVLKRALILSLVAIAPTALAAETLPPSGELGCDDLRLDSCEFFDPVSGLRLRLPRDWPMRRLRVSTETGPSAGVRQRYAERWVVIDYVPEEPSNPEASLFHAAVMPRAAWLRLSAGPDPAPGIEVATSPSLAVVAAQGRINPYPPDSRDAQIYEALIPTLEEISLILT
Ga0207568_101557	Ga0207568_1015572	F085321	METFGRIFAALGAGMILFALTYVTLLVGALVNGMVVLMAGPVI
Ga0207568_102881	Ga0207568_1028811	F093960	FSEHEVTSEQGVTADHFQDYFSPGNRWDMVHLGLFVDKENQLMLFDAPSETADEEHLGIQAIEGMIKDCGAELVVIITCDSLKFGQQLARFTNVIAGYQTIAPSGALSWAKVFYQALSFGMPLSQAFDKAQDAADPGLVLLARRDIKFRRSANLQDK
Ga0207568_102971	Ga0207568_1029711	F000466	SCAFVTLHSREDKTMTRVLTYMENWKSWKTAPSQGVVKRDWVPTGRIDFATRLNGTLEESDQPSEFKLLVEERRIVESITGNENLEIQWRLATLNEAKAVVAQYHKYLAENALIRSVSDETVSLPPPKKVQKIQETTAA
Ga0207568_103406	Ga0207568_1034062	F072075	AVAGRAAADLVHRSTTPIRPALIYTALAILALGWSLAWFLFNLSRMPPYIPGATQDPAYAPPEAVAGLALVASALVLPGSAIACVLAFRSRARRRSPIRHRVVGKP
Ga0207568_103904	Ga0207568_1039042	F045783	AFWFRADDDERGLDPDFEAFTTMDVLNVVRRLSGEL
Ga0207568_104036	Ga0207568_1040362	F045182	SREMLHSAKYQDNPVIQKRMDVLKFLDSVWTKGVPLYYWDGKELNQHIGLYHNENLAGWMLAMRNIKGMKSDAVVDEAAAQVRKKMRRAG
Ga0207568_104353	Ga0207568_1043532	F006715	MYRYRFSLLLLFILASLSVNAQEVEDTIKIKTRVVFLDALVKDKKTNLPISNLSTENFQVLDDGKPRNISYFTREGQARKPLALILILDLREDGAGRFLKRTEILKAMEDELAKLPPGDEVAIMAMNIGEDEQSVWLSEFTNDRAKLASALARVKQICEK
Ga0207568_104503	Ga0207568_1045031	F083875	MKGIFRAACLAILIAPAISAAQEYGCDKVNWGEEVLKAFPNASKGCHSVMMKNNQPYAKYVAEVESVDKSTKEVTLHMLDTKDKAFSKVVIAPKEGASVKIDGKDTPVAKLKKGDRVSFYIPHDRWGLYSDPDSTPINIVSR
Ga0207568_105082	Ga0207568_1050821	F041502	MKPRASKEPLRGELRQSLSLIAMTAMTAATFLGLGLLTAHLLG
Ga0207568_105464	Ga0207568_1054641	F024579	ELVRQLVIRMAGPARGSKLPGFVAAVGADAELDAETKATMLELARDETFLLACEDYMRATAYYH
Ga0207568_105621	Ga0207568_1056211	F075371	VGRVIAVLLATAALTAGCGGSRASDDGTLKSLVDRPGPAVGITAGASQFVPGQVRYPFLVIRN
Ga0207568_105621	Ga0207568_1056212	F015727	QHGCTARPRKPYRMSASKPRKEVKMNKARLISLTVTLSMLAFYLEGFARGLGCFFGHSGSWFDGH
Ga0207568_106385	Ga0207568_1063851	F094081	MADDHRKTLKEEFTDRLEKAKGRLQQSFPEIRQSIKTSGAVEAARKIIDPAQSIFKQFADDIQLKDLIAKAEALVANANL
Ga0207568_106387	Ga0207568_1063871	F036579	VAVDVSVPRPAAVSRATAVPARLLLSGIVAASFLLRFVAALWHTTPLYFPDEYIYSGIARSLAESGKPLIRGSSAHFPAMLEPLLAAPFWLSHDPAVAYRLTQAENALA
Ga0207568_106547	Ga0207568_1065471	F020518	MARMEPLGIHEVDEEIRHLCEDAERQTGTSASPRTYAKNPVAFKALAAFRAALAKESTLD
Ga0207568_106632	Ga0207568_1066322	F103530	MPAPEDGKFERIDPPRYVAFRRVRGTSTLAVIASVEGRDRCGYQLGRWFSERTPHGVFRNVPVDADSYGIDESVAANLIDLIRNGQPLPPRIVR