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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026758 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091553 | Ga0207559 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 22752531 |
| Sequencing Scaffolds | 30 |
| Novel Protein Genes | 31 |
| Associated Families | 31 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 10 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Croceitalea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003059 | Metagenome / Metatranscriptome | 510 | Y |
| F003222 | Metagenome | 499 | Y |
| F004455 | Metagenome / Metatranscriptome | 437 | Y |
| F009969 | Metagenome / Metatranscriptome | 310 | Y |
| F013520 | Metagenome / Metatranscriptome | 270 | Y |
| F014308 | Metagenome / Metatranscriptome | 264 | Y |
| F015356 | Metagenome / Metatranscriptome | 255 | Y |
| F021725 | Metagenome / Metatranscriptome | 217 | N |
| F021765 | Metagenome / Metatranscriptome | 217 | Y |
| F029099 | Metagenome / Metatranscriptome | 189 | N |
| F041378 | Metagenome / Metatranscriptome | 160 | Y |
| F042196 | Metagenome / Metatranscriptome | 158 | Y |
| F042319 | Metagenome / Metatranscriptome | 158 | Y |
| F042967 | Metagenome / Metatranscriptome | 157 | Y |
| F045731 | Metagenome / Metatranscriptome | 152 | N |
| F046653 | Metagenome | 151 | N |
| F048404 | Metagenome / Metatranscriptome | 148 | Y |
| F048418 | Metagenome / Metatranscriptome | 148 | Y |
| F054170 | Metagenome | 140 | Y |
| F061363 | Metagenome / Metatranscriptome | 132 | N |
| F063910 | Metagenome / Metatranscriptome | 129 | N |
| F073508 | Metagenome / Metatranscriptome | 120 | Y |
| F076245 | Metagenome / Metatranscriptome | 118 | Y |
| F081534 | Metagenome / Metatranscriptome | 114 | N |
| F082512 | Metagenome | 113 | Y |
| F082905 | Metagenome / Metatranscriptome | 113 | N |
| F088152 | Metagenome / Metatranscriptome | 109 | Y |
| F093441 | Metagenome / Metatranscriptome | 106 | Y |
| F099400 | Metagenome / Metatranscriptome | 103 | Y |
| F099534 | Metagenome | 103 | Y |
| F104058 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207559_100127 | All Organisms → cellular organisms → Bacteria | 1906 | Open in IMG/M |
| Ga0207559_100337 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1483 | Open in IMG/M |
| Ga0207559_100564 | All Organisms → cellular organisms → Bacteria | 1235 | Open in IMG/M |
| Ga0207559_100633 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1178 | Open in IMG/M |
| Ga0207559_100980 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 999 | Open in IMG/M |
| Ga0207559_101029 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 977 | Open in IMG/M |
| Ga0207559_101112 | Not Available | 946 | Open in IMG/M |
| Ga0207559_101132 | Not Available | 937 | Open in IMG/M |
| Ga0207559_101315 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Croceitalea | 882 | Open in IMG/M |
| Ga0207559_101320 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 881 | Open in IMG/M |
| Ga0207559_101487 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei | 844 | Open in IMG/M |
| Ga0207559_101499 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 842 | Open in IMG/M |
| Ga0207559_101745 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 793 | Open in IMG/M |
| Ga0207559_102225 | Not Available | 728 | Open in IMG/M |
| Ga0207559_102358 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 713 | Open in IMG/M |
| Ga0207559_102377 | All Organisms → cellular organisms → Bacteria | 711 | Open in IMG/M |
| Ga0207559_102590 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 687 | Open in IMG/M |
| Ga0207559_102708 | Not Available | 675 | Open in IMG/M |
| Ga0207559_103027 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 643 | Open in IMG/M |
| Ga0207559_103221 | Not Available | 628 | Open in IMG/M |
| Ga0207559_103348 | Not Available | 617 | Open in IMG/M |
| Ga0207559_103696 | All Organisms → cellular organisms → Bacteria | 595 | Open in IMG/M |
| Ga0207559_103723 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 593 | Open in IMG/M |
| Ga0207559_104370 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 557 | Open in IMG/M |
| Ga0207559_104870 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 533 | Open in IMG/M |
| Ga0207559_104940 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 530 | Open in IMG/M |
| Ga0207559_105065 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 525 | Open in IMG/M |
| Ga0207559_105098 | Not Available | 524 | Open in IMG/M |
| Ga0207559_105136 | Not Available | 522 | Open in IMG/M |
| Ga0207559_105384 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207559_100127 | Ga0207559_1001272 | F093441 | MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEQALIDAVSADEADAIVVEADLCDSLERVRDLAPNALLIVIGDHTPAGALGRIEPGVSGTVMAGLLHALVAEGVGGAVGWGLVPALGPRGMLQVPQRISGWLLSAKADLVREYVANAFRDHAELLTAASTVAVTVSASLVLTLSAAQTHERPHERSERVHAPAP |
| Ga0207559_100337 | Ga0207559_1003372 | F009969 | MDGILVQTTRSIRALIGVATEGAPADEIDLAYHALLDQCAAAEREALRTPPDPVARFDARAAAVLSVAYRPVLDVLCSGRSLRSEDVELAQKSSGWLNLAYEALLDGDHDTVERCLEMACAFVAADEDTRDAAPPA |
| Ga0207559_100564 | Ga0207559_1005643 | F073508 | MFIGQVEETGVIEPLVFPRALPADEPVTPQTEPDE |
| Ga0207559_100633 | Ga0207559_1006331 | F042196 | RRIVDRVASLRSVDNPAMSSREERMALNEAASRRINEGIEQAHKGDPPGRRMTITCECALKSCDRLIEITTPEYQEVRSDATQFAIVPEHLIGDIERIVFENDRFVIVAKRAGTPADVATETDPRS |
| Ga0207559_100980 | Ga0207559_1009803 | F021725 | GPGTRGGQVMLRAPDGIVPLVGYREWSIRTESDGLSPRLLSLFHPTTWPHDRPFSAVCLRPITWPERVTPRVHEGVPDESCQCGIYAFRRPEFESLNGAAGPKVRGIVFGWGRYVLGTLGWRTQFARLVALLEPGDDPGPVGELAERYRVEVIPHLERIAFLAGRPAT |
| Ga0207559_101029 | Ga0207559_1010293 | F004455 | NYRPAQTPSARCQECKYMWPKLSVGGCRYVRGVVHADDVCDEFAPERPRP |
| Ga0207559_101112 | Ga0207559_1011121 | F076245 | MNRLMRPTLLAFVVSLVVWGLVAVWDADPSAVSSWMLTWQRIAVDVAVVSGLVMLARL |
| Ga0207559_101132 | Ga0207559_1011322 | F088152 | MILSCCQIHRGCTIEVFFGEKAGGRIPWPDPDLKPDAERDFPGLVPNHLEHVLKEPNVKARERIGALTAEVADLREENKKLLDQLVAAGFRNDELAQALQEVPPILRR |
| Ga0207559_101315 | Ga0207559_1013151 | F041378 | MPRRTSIPRKTKYEVVPANRITARFSAKLMKGGKQNLAD |
| Ga0207559_101320 | Ga0207559_1013202 | F015356 | VNATEELGQLLGSLGVAVERGADQSRAFLVSPAGRRVRSIAAGGLLLGTPMILRHPFFRTPLGRAIEIGGAAALIAKGAAIIRDWEPAPGPVAPGSGSPA |
| Ga0207559_101487 | Ga0207559_1014872 | F003222 | MRHDIESCDQGGEDQDKTWLDGPVASVKGKSEALERWTAWR |
| Ga0207559_101499 | Ga0207559_1014991 | F045731 | AAFLANALVLSDADAVFDLSRRVSMDCADLERDLFPQCDHEDTLDGYVVGDHQGHLFVNGPADYRRTLGFFVEAVDPDYSDELGGAQMQILGVSTCGKGADTSYHLVYLVGLGDPNSTLPADRFLGTYELTKVDGDWAIGATYVGLYTDWQLVLDDPLSQIACGDIQPWIGAAPNLNPPQSESQPTPIPGTSST |
| Ga0207559_101745 | Ga0207559_1017452 | F082905 | IASDAVDIAALEALLDQAGFVGGTQRQFSRVHGGRRRILARVLTFETPEGASAYVAWLRDHGDEVIGRATPSASLQVPRHGVVLVHEPNPCCHNETRMFLAMWHQGSTVVTIEIAGEGARETDIPELLSQLDAAV |
| Ga0207559_102225 | Ga0207559_1022252 | F099400 | MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMH |
| Ga0207559_102358 | Ga0207559_1023582 | F014308 | MSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKIA |
| Ga0207559_102377 | Ga0207559_1023772 | F082512 | MNHEQDVATLIELLKMAAERWPRSEADQASQSELFHEDHSLLEMWPEACRRTGV |
| Ga0207559_102590 | Ga0207559_1025901 | F021765 | SSRSVRARMRDVEPDTDDRAAGPFGSRFVGVGIGLATFAVFVMLPFLIPITFYVFANVYAAIKGTTFSSDTANSGVVLTLLVVSVVLFPVGLAAGIAFLGRALSPKRRRA |
| Ga0207559_102708 | Ga0207559_1027082 | F013520 | MHPAETYRRRAERAERACENARTPDAKRLARTAAQRWRELAELAERREAEGPPIPIRFGDASEAVNYAQDHKFALYWKGTHAFAKRQRELGDRFVARPVFTRKGS |
| Ga0207559_102827 | Ga0207559_1028271 | F081534 | MRRAFALFGLSATLAVAWISMLPSQALATVTGPCTVSIDGADVTNGHGVPGSAVPLQSGSQVSVDGTAQSRVTDLNYTVHIAGGGVQVGTVTIAQDGLSWSGTVDLESISNATVGLFEVTAEVQTTGQDCSGVAYVCIEGRSP |
| Ga0207559_103027 | Ga0207559_1030271 | F029099 | FYQTELGKTLRIDETDEGAISVDILKDGVWSEAPRGMIGLRLSPGARTLTATEILALPA |
| Ga0207559_103221 | Ga0207559_1032212 | F099534 | LGRYGTGIGMTDVAAMMKAIEAMHTCHVEFVVRTAGKGVDGSMLIGCVATFDTLPGSDLPKRVDVEHTWPSKAARTFDGLCYNLLWQLDYAIQKAYEQL |
| Ga0207559_103348 | Ga0207559_1033481 | F048404 | VEERATEAQSQRGVGTENPSQARMHRRLGTRLPLGGLLGAIAGAMVGTLVGFLFFDRSAAVLTSILASAVFGLGVGMLVAGYSSLESPDPGAEPSDTARPVADRPEVVREERPDPPVPNQMPED |
| Ga0207559_103696 | Ga0207559_1036962 | F054170 | MNVTIGFQETEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS |
| Ga0207559_103723 | Ga0207559_1037232 | F042967 | MDGSRLLTTIGLIRQARPGGFCPACRVLMKARDAGQELARPLVAALVVLAV |
| Ga0207559_104370 | Ga0207559_1043702 | F048418 | ARVKAVPARRQAAINSIDWLGLWALSLGFCAIVLAGIAYFTIGDNIGASSILMGAAAIIAVIVRFGADRDQARDGN |
| Ga0207559_104870 | Ga0207559_1048701 | F003059 | MLAGAAIVMAAMPAAAQVRDAVYRGTLICDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK |
| Ga0207559_104940 | Ga0207559_1049402 | F104058 | EALRQNGDEEQAKLAALDTIADADERVRLKRIGVGRREVTVVLVVHADTLVVGRIPFLDDLGRVTVSGSTAVPRD |
| Ga0207559_105065 | Ga0207559_1050651 | F061363 | HSGPGLVIPLGFGVAVLVGATFAGAPVARADGGAYLDLDRTHYLPGQTAWFEGYVSIPRAKQDLIERGPFYVFVVPPRTAVTEGQPIPAEAIRAGTASIERDRGSVFELHGSFVVPELAGRTYALSVCNDPCTISGFREPLTGTISIVATAREGELLTEVSRLNGRNWSLRRQV |
| Ga0207559_105098 | Ga0207559_1050981 | F046653 | KVVGVTPTFTEVYEYAAGVRSESILLPLREDYGQDIGVLVNRVSDGDTNAANDPDKLDWSAFEVSAGIALPDFNDALNAGVDLSITGAAALNVLDGLVVLKVAGFEMQLGKVSGDDGNTTLTDAQALSVTLTDVTLWVGPGGSLSDGGTALDVTDGTTFSDDAVVAGTLGFSGH |
| Ga0207559_105136 | Ga0207559_1051361 | F063910 | MSERHNLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTPTTTG |
| Ga0207559_105384 | Ga0207559_1053841 | F042319 | TYQTTTIGIADQSALLSRIAAWCTHFVEGVREGQEIAARYHALSRLSTPELARRGLNRQTIARAALTSY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |