Metagenome / Metatranscriptome Family F076245

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076245
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	67 residues
Representative Sequence	MNRLMRPTLLAFVVSLVVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR
Number of Associated Samples	84
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.88 %
% of genes near scaffold ends (potentially truncated)	27.97 %
% of genes from short scaffolds (< 2000 bps)	77.97 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.169 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment (19.492 % of family members)
Environment Ontology (ENVO)	Unclassified (33.051 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (34.746 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.89% β-sheet: 0.00% Coil/Unstructured: 35.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF13847	Methyltransf_31	3.42
PF00583	Acetyltransf_1	1.71
PF12697	Abhydrolase_6	1.71
PF13473	Cupredoxin_1	0.85
PF12833	HTH_18	0.85
PF03793	PASTA	0.85
PF01841	Transglut_core	0.85
PF05711	TylF	0.85
PF04326	AlbA_2	0.85
PF01872	RibD_C	0.85
PF13649	Methyltransf_25	0.85
PF13683	rve_3	0.85
PF00692	dUTPase	0.85
PF01032	FecCD	0.85
PF01833	TIG	0.85
PF00355	Rieske	0.85
PF00589	Phage_integrase	0.85
PF03992	ABM	0.85
PF10094	DUF2332	0.85
PF13396	PLDc_N	0.85
PF08818	DUF1801	0.85
PF10399	UCR_Fe-S_N	0.85
PF13302	Acetyltransf_3	0.85
PF00011	HSP20	0.85
PF01641	SelR	0.85
PF01569	PAP2	0.85
PF05767	Pox_A14	0.85
PF10706	Aminoglyc_resit	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.85
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	0.85
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	0.85
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.85
COG2865	Predicted transcriptional regulator, contains HTH domain	Transcription [K]	0.85
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.85
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
All Organisms	root	All Organisms	39.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
cellular organisms	root	All Organisms → cellular organisms	39.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	23.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.03 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.69 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.02 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	9.32 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	8.47 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.78 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.69 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.85 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	8.47 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.78 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.69 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.85 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.17 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	8.47 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.78 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.69 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Actinobacteria bacterium RBG_16_67_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16880071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1192	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig1190071	Not Available	1467	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig60381	Not Available	1514	Open in IMG/M
2228664021\|ICCgaii200_c1103109	Not Available	903	Open in IMG/M
3300000550\|F24TB_14153175	Not Available	551	Open in IMG/M
3300000858\|JGI10213J12805_10389846	Not Available	1275	Open in IMG/M
3300000956\|JGI10216J12902_100697509	All Organisms → cellular organisms → Bacteria	2861	Open in IMG/M
3300000956\|JGI10216J12902_103275525	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300000956\|JGI10216J12902_110876436	Not Available	818	Open in IMG/M
3300000956\|JGI10216J12902_115670888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	855	Open in IMG/M
3300001976\|JGI24752J21851_1040654	Not Available	622	Open in IMG/M
3300002155\|JGI24033J26618_1034154	Not Available	692	Open in IMG/M
3300004480\|Ga0062592_100002939	All Organisms → cellular organisms → Bacteria	5341	Open in IMG/M
3300004480\|Ga0062592_100020241	All Organisms → cellular organisms → Bacteria	3013	Open in IMG/M
3300004480\|Ga0062592_101873778	Not Available	589	Open in IMG/M
3300005169\|Ga0066810_10076409	Not Available	703	Open in IMG/M
3300005331\|Ga0070670_100745976	Not Available	882	Open in IMG/M
3300005345\|Ga0070692_10843920	Not Available	629	Open in IMG/M
3300005354\|Ga0070675_100810129	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300005406\|Ga0070703_10066603	Not Available	1192	Open in IMG/M
3300005441\|Ga0070700_100048661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2628	Open in IMG/M
3300005444\|Ga0070694_101518486	Not Available	567	Open in IMG/M
3300005467\|Ga0070706_101993383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	526	Open in IMG/M
3300005535\|Ga0070684_100960068	Not Available	802	Open in IMG/M
3300005937\|Ga0081455_10160884	Not Available	1721	Open in IMG/M
3300006196\|Ga0075422_10006253	Not Available	3763	Open in IMG/M
3300006577\|Ga0074050_11879969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300006844\|Ga0075428_100239100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1959	Open in IMG/M
3300006844\|Ga0075428_101045100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	864	Open in IMG/M
3300006846\|Ga0075430_100728611	Not Available	817	Open in IMG/M
3300006904\|Ga0075424_101991230	Not Available	613	Open in IMG/M
3300006969\|Ga0075419_10463007	Not Available	876	Open in IMG/M
3300009011\|Ga0105251_10034654	All Organisms → cellular organisms → Bacteria	2496	Open in IMG/M
3300009081\|Ga0105098_10109545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1201	Open in IMG/M
3300009094\|Ga0111539_11467378	Not Available	791	Open in IMG/M
3300009100\|Ga0075418_12745141	Not Available	538	Open in IMG/M
3300009147\|Ga0114129_10470383	Not Available	1646	Open in IMG/M
3300009168\|Ga0105104_10610510	Not Available	621	Open in IMG/M
3300009789\|Ga0126307_10656651	Not Available	846	Open in IMG/M
3300009801\|Ga0105056_1019301	Not Available	829	Open in IMG/M
3300009811\|Ga0105084_1056757	Not Available	699	Open in IMG/M
3300009817\|Ga0105062_1000176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5695	Open in IMG/M
3300009817\|Ga0105062_1026991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	990	Open in IMG/M
3300009818\|Ga0105072_1084134	Not Available	627	Open in IMG/M
3300009823\|Ga0105078_1011310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	961	Open in IMG/M
3300009836\|Ga0105068_1118317	Not Available	528	Open in IMG/M
3300010036\|Ga0126305_11293643	Not Available	503	Open in IMG/M
3300010037\|Ga0126304_10215189	Not Available	1259	Open in IMG/M
3300010037\|Ga0126304_11195801	Not Available	521	Open in IMG/M
3300010038\|Ga0126315_10409333	Not Available	854	Open in IMG/M
3300010041\|Ga0126312_10288571	Not Available	1156	Open in IMG/M
3300010041\|Ga0126312_10885609	Not Available	650	Open in IMG/M
3300010042\|Ga0126314_10015970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4436	Open in IMG/M
3300010042\|Ga0126314_10842015	Not Available	676	Open in IMG/M
3300010166\|Ga0126306_10806494	Not Available	757	Open in IMG/M
3300010403\|Ga0134123_12707183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	564	Open in IMG/M
3300011119\|Ga0105246_10009502	All Organisms → cellular organisms → Bacteria	5989	Open in IMG/M
3300012015\|Ga0120187_1048532	Not Available	558	Open in IMG/M
3300012204\|Ga0137374_10162665	Not Available	1974	Open in IMG/M
3300012355\|Ga0137369_10904975	Not Available	592	Open in IMG/M
3300012360\|Ga0137375_10175096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2065	Open in IMG/M
3300012909\|Ga0157290_10292067	Not Available	597	Open in IMG/M
3300014969\|Ga0157376_12645964	Not Available	542	Open in IMG/M
3300017997\|Ga0184610_1078347	Not Available	1021	Open in IMG/M
3300017997\|Ga0184610_1100252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	917	Open in IMG/M
3300018028\|Ga0184608_10076985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1361	Open in IMG/M
3300018031\|Ga0184634_10057405	Not Available	1626	Open in IMG/M
3300018031\|Ga0184634_10333802	Not Available	695	Open in IMG/M
3300018052\|Ga0184638_1013942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2767	Open in IMG/M
3300018052\|Ga0184638_1021991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2262	Open in IMG/M
3300018052\|Ga0184638_1294160	Not Available	550	Open in IMG/M
3300018052\|Ga0184638_1312267	Not Available	530	Open in IMG/M
3300018053\|Ga0184626_10032202	Not Available	2166	Open in IMG/M
3300018053\|Ga0184626_10204923	Not Available	835	Open in IMG/M
3300018056\|Ga0184623_10184588	Not Available	961	Open in IMG/M
3300018056\|Ga0184623_10197173	Not Available	926	Open in IMG/M
3300018072\|Ga0184635_10128914	Not Available	1007	Open in IMG/M
3300018072\|Ga0184635_10168229	Not Available	875	Open in IMG/M
3300018073\|Ga0184624_10229962	Not Available	830	Open in IMG/M
3300018075\|Ga0184632_10150447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1026	Open in IMG/M
3300018076\|Ga0184609_10005197	All Organisms → cellular organisms → Bacteria	4531	Open in IMG/M
3300018076\|Ga0184609_10007301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_67_10	3974	Open in IMG/M
3300018078\|Ga0184612_10003631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7667	Open in IMG/M
3300018078\|Ga0184612_10046622	All Organisms → cellular organisms → Bacteria	2255	Open in IMG/M
3300018081\|Ga0184625_10039130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2349	Open in IMG/M
3300018081\|Ga0184625_10144096	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300018465\|Ga0190269_11470033	Not Available	559	Open in IMG/M
3300018469\|Ga0190270_10261663	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300018469\|Ga0190270_13037208	Not Available	531	Open in IMG/M
3300018469\|Ga0190270_13037208	Not Available	531	Open in IMG/M
3300021073\|Ga0210378_10012102	Not Available	3613	Open in IMG/M
3300021073\|Ga0210378_10071872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1356	Open in IMG/M
3300022534\|Ga0224452_1228398	Not Available	570	Open in IMG/M
3300022694\|Ga0222623_10004448	All Organisms → cellular organisms → Bacteria	4897	Open in IMG/M
3300022694\|Ga0222623_10005676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4402	Open in IMG/M
3300022694\|Ga0222623_10047417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1652	Open in IMG/M
3300022694\|Ga0222623_10055576	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300025735\|Ga0207713_1114154	Not Available	914	Open in IMG/M
3300025908\|Ga0207643_10000169	All Organisms → cellular organisms → Bacteria	45145	Open in IMG/M
3300025910\|Ga0207684_10648760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	899	Open in IMG/M
3300026118\|Ga0207675_101230180	Not Available	769	Open in IMG/M
3300026758\|Ga0207559_101112	Not Available	946	Open in IMG/M
3300026933\|Ga0207578_1018764	Not Available	528	Open in IMG/M
3300027006\|Ga0209896_1019184	Not Available	766	Open in IMG/M
3300027056\|Ga0209879_1001539	Not Available	3142	Open in IMG/M
3300027873\|Ga0209814_10109459	Not Available	1175	Open in IMG/M
3300028722\|Ga0307319_10230870	Not Available	608	Open in IMG/M
3300028771\|Ga0307320_10166539	Not Available	856	Open in IMG/M
3300028771\|Ga0307320_10407481	Not Available	546	Open in IMG/M
3300028814\|Ga0307302_10089219	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300028814\|Ga0307302_10229208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	909	Open in IMG/M
3300028875\|Ga0307289_10154767	Not Available	943	Open in IMG/M
3300028878\|Ga0307278_10000548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19032	Open in IMG/M
3300028878\|Ga0307278_10002906	All Organisms → cellular organisms → Bacteria	8389	Open in IMG/M
3300028878\|Ga0307278_10020653	All Organisms → cellular organisms → Bacteria	3046	Open in IMG/M
3300028878\|Ga0307278_10360609	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300028878\|Ga0307278_10493088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	535	Open in IMG/M
3300031943\|Ga0310885_10523863	Not Available	649	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.20%
Host-Associated	Host-Associated	17.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.08%
Aquatic	Environmental → Aquatic	27.12%
Plants	Host-Associated → Plants	17.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.08%
Sediment	Environmental → Aquatic → Sediment	23.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.24%
Freshwater	Environmental → Aquatic → Freshwater	3.39%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	23.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.86%
Sand	Environmental → Terrestrial → Soil → Sand	7.63%
Loam	Environmental → Terrestrial → Soil → Loam	6.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.24%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	23.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.63%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.24%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.69%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	19.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.56%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.47%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.63%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.08%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.69%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012015	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026758	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 (SPAdes)	Environmental	Open in IMG/M
3300026933	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes)	Environmental	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02359570	2088090014	Soil	MNRLMRAILLTFVISLAVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLSR
KansclcFeb2_07209210	2124908045	Soil	MNRLMRATLLAFVVSLVAWGLIAVWTQIRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR
KansclcFeb2_05324060	2124908045	Soil	MNKLMRLSVVTFIVSLGVWGLIAVWNQIRVYELLLTWQRIAVDLAIVSGLAMVALLVHAAWLRLRR
ICCgaii200_11031092	2228664021	Soil	VSSLTGGTVNWLMRLSLVIFVVSLSVWGVIAVWQTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR
F24TB_141531751	3300000550	Soil	MKSLMRVTLVTFLVSIGVWGLIAVWNQVRIYDLLLTWQAIAVVVASVSGLAMLALLVQAAWERLKT*
JGI10213J12805_103898464	3300000858	Soil	MNRLMRVALPTFVVSLVVWGLVAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR*
JGI10216J12902_1006975095	3300000956	Soil	MNKLMRLSVVTFIVSLGVWGLIAVWNQIRVYELLLTWQRIAVDLAIVSGLAMVALLVHAAWLRLRR*
JGI10216J12902_1032755252	3300000956	Soil	MNRLMRVTLLTFVVSLVVWGLIAVWALWDQDPRAFSTSWMLTWQRIAVEVATVSGLVMLALLVYAAWERLRR*
JGI10216J12902_1108764361	3300000956	Soil	VTFVMSLVVWGVIAVWRTVRVYELMRTWQIIAVNLAVVSGLVMLALLVNAAWARLRP*
JGI10216J12902_1156708881	3300000956	Soil	MRAALLAFVISLVVWGLIALWNEIRVYELLLTWQRIAIDAAIVSGLVMLALLVYAAWERLKR
JGI24752J21851_10406542	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	MNRLMRPTLLAFVVSLVVWGLVAVWDADPSAVSSWMLTWQRIAVDVAVVSGLVMLARLVYATWERLTRWCRS
JGI24033J26618_10341541	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	MNRLMRPTLLAFVVSLVVWGLVAVWDADPSAVSSWMLTWQRIAVDVAVVSGLVMLARLVYAT
Ga0062592_1000029397	3300004480	Soil	MSSRKDGDTMNRLMRVTLLTFVVSLVVWGLVAVWDADPRALTGWMLTWQRIAVYVATVSGLVMLALLVYAAWDRLRR*
Ga0062592_1000202415	3300004480	Soil	MRPTLLAFVISLVVWGLIAVWTPVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLSR*
Ga0062592_1018737782	3300004480	Soil	VNRLMRLSVVTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR*
Ga0066810_100764091	3300005169	Soil	VNRLMRPTLLTFVVSLVVWGLIAVWDEDPRALASWMLTWQRIAVDVAIVSGLVMLALLVYAAWERLSR*
Ga0070670_1007459762	3300005331	Switchgrass Rhizosphere	MNRLMRPTLLAFVISLVVWGLIAVWTQVRVYELLRTWQIFAVDVAIVSGLVMLALLVYAAWERLRR*
Ga0070692_108439201	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR*
Ga0070675_1008101292	3300005354	Miscanthus Rhizosphere	MSSRKDGDTMNTLMRVTLLTFVVSLVVWGLVAVWDADPRALTTWMLTWQRIAVYVATVSGLVMLALLVYAAWEQLRR*
Ga0070703_100666031	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	FIVSLGVGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR*
Ga0070700_1000486614	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRPTLLAFVVSLVVWGLVAVWDADPSAVSSWMLTWQRIAVDVAVVSGLVMLARLVYATWERLTRWCRSASGCTSRIGEPHLRR
Ga0070694_1015184861	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSSRKDGDTMNTLMRVTLLTFVVSLVVWGLVAVWDADPRALTTWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR*
Ga0070706_1019933831	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSSRKDGDTMNTLMRVTLLTFVVSLVVWGLVAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWEQLRR*
Ga0070684_1009600682	3300005535	Corn Rhizosphere	RLMRLSVVTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR*
Ga0081455_101608842	3300005937	Tabebuia Heterophylla Rhizosphere	VNWLMRLSLVTFVVSLVVWGVVAVWGQVRVYELMLTWQRIAVSLAVVSGLVMLALLVHAAWARLRRDAEELGAGGRPKRV*
Ga0075422_100062533	3300006196	Populus Rhizosphere	MNRLMRPTLQAFVVSLVVWGLIAVWDADPRAVSSWLLTWQRIAVVLAIVSGLVMLALLVYAAWERLTR*
Ga0074050_118799692	3300006577	Soil	VNRLMRLSLVTFVVSLGVWGVIAIWTQVRVYELMLTWARIAVDLAVVSGLVMLALLVHAAWARLTR*
Ga0075428_1002391004	3300006844	Populus Rhizosphere	RKDGGTMNRLMRPTLLAFVVSLVVWGLIAVWDADPRAVSSWLLTWQRIAVVLAIVSGLVMLALLVYAAWERLSR*
Ga0075428_1010451001	3300006844	Populus Rhizosphere	VNWLMRLSLVIFVVSLSVWGVIAVWQTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR*
Ga0075430_1007286112	3300006846	Populus Rhizosphere	MNRLMRPTLQAFVVSLVVWGLIAVWDADPRAVSSWLLTWQRIAVVLAIVSGLVMLALLVYAAWERLSR*
Ga0075424_1019912302	3300006904	Populus Rhizosphere	VRGGTVNWLMRLSLVIFVVSLSVWGVIAVWQTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR*
Ga0075419_104630071	3300006969	Populus Rhizosphere	MNRLMRPTLLAFVVSLVVWGLIAVWDADPRAVSSWLLTWQRIAVVLAIVSGLVMLALLVYAAWERLSR*
Ga0105251_100346543	3300009011	Switchgrass Rhizosphere	EALVNRLMRLSVVTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR*
Ga0105098_101095452	3300009081	Freshwater Sediment	MRLSLVMFVVSLSVWGVIAVWQTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR*
Ga0111539_114673782	3300009094	Populus Rhizosphere	MRLSLVIFVVSLSVWGVIAVWQTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR*
Ga0075418_127451412	3300009100	Populus Rhizosphere	AFVVSLVVWGLIAVWDADPRAVSSWLLTWQRIAVVLAIVSGLVMLALLVYAAWERLSR*
Ga0114129_104703832	3300009147	Populus Rhizosphere	VSSVRGGTVNWLMRLSLVIFVVSLSVWGVIAVWQTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR*
Ga0105104_106105101	3300009168	Freshwater Sediment	MNRLMRATLLAFVVSLAVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLAMLALLVYAAWERLRR*
Ga0126307_106566511	3300009789	Serpentine Soil	MNRSMRATLLTFMVSLVVWGLIAVWTQIRVYELLLTWQRIAFDVAIVSGLMILALLVYAAWERLRR*
Ga0105056_10193011	3300009801	Groundwater Sand	GSRKDGGRMKRLMHATLPTFVVSLVVCGLIAVWDEDSRALTSWMLTWQRIALDVAIVSGLVMLAMLVYAAWERLRR*
Ga0105084_10567571	3300009811	Groundwater Sand	MNRLMRPTLLAFVISLVVWGLIAVWDADPRAVSSWLLTWQRIAIVVAIVSGLVMLALLVYAAWERLSR*
Ga0105062_10001764	3300009817	Groundwater Sand	MNRLMRPTLLVFVISLVVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLSR*
Ga0105062_10269913	3300009817	Groundwater Sand	MNRLMRPNLLAFVVSLVVWGLIAVWDADPRAVSSWLLTWQRIAVVVAIVSGLVMLALLVYAAWERLSR*
Ga0105072_10841341	3300009818	Groundwater Sand	FVVSLVVWGLIAVWDEDPRAVASWMLTWQRIALDVVIVSGLVMLALLVYTAWERLSR*
Ga0105078_10113105	3300009823	Groundwater Sand	MNRLMRVALPTFVVSLVVWGLVVVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR*
Ga0105068_11183172	3300009836	Groundwater Sand	MRLSLVMFVVSLSVWGVIAVWATVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR*
Ga0126305_112936431	3300010036	Serpentine Soil	VVSLVVWGLIAVWDADPRAISSWLLTWQRIAIVVAIVSGLVMLALLVYGAWERLSR*
Ga0126304_102151894	3300010037	Serpentine Soil	MNRLMRPTLLAFVISLVVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLSR*
Ga0126304_111958011	3300010037	Serpentine Soil	RRDGGRMNRLMRATLLAFVVSFAVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR*
Ga0126315_104093333	3300010038	Serpentine Soil	MNRLMRATLLAFVVSLAVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR*
Ga0126312_102885712	3300010041	Serpentine Soil	MRATLLAFVVSLAVWGLIAVWTQIRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR*
Ga0126312_108856091	3300010041	Serpentine Soil	MRLSLVMFVVSLSVWGVIAVWRTVRVYELMRTWEIISVSLAVVSGLVMLALLVNAAWARLRR*
Ga0126314_100159703	3300010042	Serpentine Soil	MNRSMRATLLTFMVSLVVWGLFAVWTQIRVYELLLTWQRIAFDVAIVSGLMILALLVYAAWERLRR*
Ga0126314_108420152	3300010042	Serpentine Soil	MNRLMRATLLAFVVSLAMWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR*
Ga0126306_108064942	3300010166	Serpentine Soil	MNRLMRATLLAFVVSLAVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAGERLRR*
Ga0134123_127071832	3300010403	Terrestrial Soil	MNKLMRPTLLTFVVSLVVWGLIAVWDEDPRAVASWMLTWQRIALDVAIVSGLVMLALLVYAAWERLSR*
Ga0105246_100095024	3300011119	Miscanthus Rhizosphere	MRLSVVTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR*
Ga0120187_10485321	3300012015	Terrestrial	VNRLIRPTVLAFVVSLLVWGLIAVWDADSRAISSWLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRGPWRS*
Ga0137374_101626652	3300012204	Vadose Zone Soil	MNRLMRPTLLAFVVSLVVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR*
Ga0137369_109049752	3300012355	Vadose Zone Soil	MRLSLVTFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWARLRR*
Ga0137375_101750964	3300012360	Vadose Zone Soil	MNRLMRATLLAFVVSLVVWGLIAVWTQIRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLIR*
Ga0157290_102920671	3300012909	Soil	MNRLMRPTLLAFVISLVVWGLIAVWTPVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLSR*
Ga0157376_126459642	3300014969	Miscanthus Rhizosphere	MRLSVVTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALRVHAAWLRLRR*
Ga0184610_10783472	3300017997	Groundwater Sediment	GTVNWLMRLSLVIFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR
Ga0184610_11002522	3300017997	Groundwater Sediment	MNRLMRPTLLAFVISLVVWGLIAVWDADPRAVSSWLLTWQRIAIVVAIVSGLVMLALLVYAAWERLSR
Ga0184608_100769852	3300018028	Groundwater Sediment	MNRLMRVTLPTFVVSLVVWGLIAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR
Ga0184634_100574055	3300018031	Groundwater Sediment	VNWLMRLSLVTFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLSR
Ga0184634_103338022	3300018031	Groundwater Sediment	MNRLMRPTLLTFVVSLVGWGLIAVWDEDSRAIASWMLTWQRIALDVAIVSGLVMLALLVYAAWERLSR
Ga0184638_10139423	3300018052	Groundwater Sediment	VNRLMRLSLVTFVVSLGVWGVIAVWTQVRVNELMLTWARIAVDLAVVSGLVMLALLVHAAWAQLTR
Ga0184638_10219913	3300018052	Groundwater Sediment	VNRLMRLSLVTFVVSLGVWGVIAIWTQVRVYELMLTWARIAVDLAVVSGLVMLALLVHAAWARLTG
Ga0184638_12941601	3300018052	Groundwater Sediment	MNRLMRVTLLTFVVSLVVWGLIAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR
Ga0184638_13122671	3300018052	Groundwater Sediment	MNRLMRATLLAFVVSLAVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR
Ga0184626_100322022	3300018053	Groundwater Sediment	VNWLMRLSLVMFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR
Ga0184626_102049231	3300018053	Groundwater Sediment	TMNRLMRVTLLTFVVSLVVWGLLAVWYADPRALPSWMLTWQRIAVDVAMVSGLVMLALLVYAAWERLRR
Ga0184623_101845882	3300018056	Groundwater Sediment	VNWLMRLSLVIFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR
Ga0184623_101971732	3300018056	Groundwater Sediment	ASSRKDGGKINRLMRPTLLAFVISLVVWGVIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLSR
Ga0184635_101289142	3300018072	Groundwater Sediment	MRLSLVTFVVSLGVWGVIAIWTQVRVYELMLTWARIAVDLAVVSGLVMLALLVHAAWARLTG
Ga0184635_101682292	3300018072	Groundwater Sediment	MNRLMRPTLLAFVVSLVVWGLIAVWDADPRAISSWLRTWQIIAVDVAIVSGLVMLALLVYVAWERLSR
Ga0184624_102299621	3300018073	Groundwater Sediment	LMRPTLLAFVVSLVVWGLIAVWDEDSRAIASWMLTWQRIALDVAIVSGLVMLALLVYAAWERLSR
Ga0184632_101504473	3300018075	Groundwater Sediment	MNRLMRATLLAFVVSLAVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYVAWERLSR
Ga0184609_100051973	3300018076	Groundwater Sediment	VNRLMRLSLVTFVVSLGVWGVIAIWTQVRVYELMLAWARIAVDLAVVSGLVMLALLVHAAWARLTR
Ga0184609_100073013	3300018076	Groundwater Sediment	VNWLMRLSLVTFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR
Ga0184612_1000363111	3300018078	Groundwater Sediment	VNWLMRLSLVTFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAA
Ga0184612_100466223	3300018078	Groundwater Sediment	MNRLMRVTLLTFVVSLVVWGMLAVWYADPRALPSWMLTWQRIAVDVAMVSGLVMLALLVYAAWERLRR
Ga0184625_100391304	3300018081	Groundwater Sediment	VNWLMRLSLVMFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLMMLALLVNAAWERLRR
Ga0184625_101440962	3300018081	Groundwater Sediment	MNRLMRPTLLAFVVSLVVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR
Ga0190269_114700331	3300018465	Soil	MNRLMHATLPTFVVSLVVWGLIAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR
Ga0190270_102616632	3300018469	Soil	MNRLMRGTLLAFVVSLAVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR
Ga0190270_130372081	3300018469	Soil	LAFVISLVVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR
Ga0190270_130372083	3300018469	Soil	MNRLMRATLLMFVVSLVVWGLFAVWYADPRRAVASWVRTWQIIAVDVAIVSGLVMLALLVYA
Ga0210378_100121021	3300021073	Groundwater Sediment	SSVTGGTVNWLMRLSLVIFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR
Ga0210378_100718722	3300021073	Groundwater Sediment	VNRLMRLSLVTFVVSLGVWGLIAIWTQVRVYELMLAWARIAVDLAVVSGLVMLALLVHAAWARLTR
Ga0224452_12283982	3300022534	Groundwater Sediment	VSVSVWGVIAVWGTVRVYELMRTWQIIAVSLAVVSGLVMLALLVQAAWARLRR
Ga0222623_100044487	3300022694	Groundwater Sediment	VNWLMRLSLVMFVVSLSVWGVIAVWQTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR
Ga0222623_100056763	3300022694	Groundwater Sediment	VNWLMRLSLVTFVVSVSVWGVIAVWGTVRVYELMRTWQIIAVSLAVVSGLVMLALLVQAAWARLRR
Ga0222623_100474173	3300022694	Groundwater Sediment	VNRLMRLSLVTFVVSLGVWGVIAIWTQVRVYELMLAWARIAVDLAVVSGLVMLALLVHAAWARLIR
Ga0222623_100555762	3300022694	Groundwater Sediment	VNWLMRLSLVIFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMLALLVQAAWARLRR
Ga0207713_11141541	3300025735	Switchgrass Rhizosphere	MRLSVVTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR
Ga0207643_1000016928	3300025908	Miscanthus Rhizosphere	VNRLMRLSVVTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR
Ga0207684_106487602	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSSRKDGDTMNTLMRVTLLTFVVSLVVWGLVAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR
Ga0207675_1012301802	3300026118	Switchgrass Rhizosphere	VVTFIVSLGVWGVIAVWNEVRIYELLRTWQIIAVDLAIVSGLVMLALLVHAAWLRLRR
Ga0207559_1011121	3300026758	Soil	MNRLMRPTLLAFVVSLVVWGLVAVWDADPSAVSSWMLTWQRIAVDVAVVSGLVMLARL
Ga0207578_10187641	3300026933	Soil	MNTLMRVTLLTFVVSLVVWGLVAVWDADPRALTTWMLTWQRIAVYVATVSGLVMLALLVYAAWEQL
Ga0209896_10191841	3300027006	Groundwater Sand	MNRLMRPTLLVFVISLVVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLSR
Ga0209879_10015394	3300027056	Groundwater Sand	MNRLMRVALPTFVVSLVVWGLVVVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR
Ga0209814_101094591	3300027873	Populus Rhizosphere	MNRLMRPTLLAFVVSLVVWGLIAVWDADPRAVSSWLLTWQRIAVVLAIVSGLVMLALLVYAGWERLTR
Ga0307319_102308702	3300028722	Soil	MNRLMRATLPTFVVSLVVWGVIAVWDEDPGALTSWMLTWQRIAVDVAIVSGLVMLALLVYVAWERLSR
Ga0307320_101665392	3300028771	Soil	MNRLMRPALLAFVISLVVWGLIAVWTQVRVYELLRTWQIIAVDVAIVSGLVMLALLVYAAWERLSR
Ga0307320_104074812	3300028771	Soil	MNRLMRATLPTFVVSLVVWGLIAVWDEDPGALTSWMLTWQRIAVDVAIVSGLVMLALLVYVAWERLSR
Ga0307302_100892193	3300028814	Soil	MRLSLVMFVVSLSVWGVIAVWQTVRVYELMRTWQIIAVSLAVVSGLVMLALLVNAAWERLRR
Ga0307302_102292081	3300028814	Soil	MSSRKDGDTMNKLMRVTLLTFVVSLVVWGLIAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWE
Ga0307289_101547671	3300028875	Soil	WLMRLSLVTFVVSVSVWGVIAVWGTVRVYELMRTWQIIAVSLAVVSGLVMLALLVQAAWARLRR
Ga0307278_1000054823	3300028878	Soil	MSSRKDGDTMNRLMRVTLLTFVVSLVVWGLIAVWDADPRALTSWMLTWQRIAVYVATVSGLVMLALLVYAAWERLRR
Ga0307278_1000290612	3300028878	Soil	MNRLMRPTLLAFVVSLVVWGLIAVWDADPRAISSWLRTWQIIAVDVAIVSGLVMLALLVYAAWERLRR
Ga0307278_100206531	3300028878	Soil	MNRLMRPTLLAFVISLVVWGLIAVWDADPRAVSSWLLTWQRIAIVVAIVSGLVMLALLVYAAWER
Ga0307278_103606091	3300028878	Soil	LMRPTLLAFVISLVVWGLIAVWDADPRAVSSWLLTWQRIAIVVAIVSALVMLALLVYAAWERLSR
Ga0307278_104930882	3300028878	Soil	VNWLMRLSLVTFVVSLSVWGVIAVWRTVRVYELMRTWQIIAVSLAVVSGLVMVALLVNAAWERLRR
Ga0310885_105238631	3300031943	Soil	MNRLMRPTLLAFVVSLVVWGLVAVWDADPSAVSSWMLTWQRIAVDVAVVSGLVMLARLVYATWERLTRWCRSASGC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076245

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences