Sample 3300026742

Overview

Basic Information
IMG/M Taxon OID	3300026742 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072100 \| Ga0207597
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	22511624
Sequencing Scaffolds	19
Novel Protein Genes	20
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
Not Available	6
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000146	Metagenome / Metatranscriptome	1918	Y
F000336	Metagenome / Metatranscriptome	1274	Y
F001033	Metagenome / Metatranscriptome	799	Y
F007651	Metagenome / Metatranscriptome	347	N
F012397	Metagenome	281	Y
F017759	Metagenome	239	N
F021340	Metagenome	219	Y
F025086	Metagenome / Metatranscriptome	203	Y
F026346	Metagenome / Metatranscriptome	198	Y
F034737	Metagenome	174	Y
F035044	Metagenome / Metatranscriptome	173	Y
F035451	Metagenome / Metatranscriptome	172	Y
F036981	Metagenome	169	Y
F044132	Metagenome / Metatranscriptome	155	Y
F046248	Metagenome	151	Y
F054151	Metagenome / Metatranscriptome	140	N
F056934	Metagenome / Metatranscriptome	137	N
F057488	Metagenome	136	N
F060880	Metagenome / Metatranscriptome	132	N
F070538	Metagenome	123	N

Family

Category

Number of Sequences

3D Structure?

F000146

Metagenome / Metatranscriptome

1918

F000336

Metagenome / Metatranscriptome

1274

F001033

Metagenome / Metatranscriptome

799

F007651

Metagenome / Metatranscriptome

347

F012397

Metagenome

281

F017759

Metagenome

239

F021340

Metagenome

219

F025086

Metagenome / Metatranscriptome

203

F026346

Metagenome / Metatranscriptome

198

F034737

Metagenome

174

F035044

Metagenome / Metatranscriptome

173

F035451

Metagenome / Metatranscriptome

172

F036981

Metagenome

169

F044132

Metagenome / Metatranscriptome

155

F046248

Metagenome

151

F054151

Metagenome / Metatranscriptome

140

F056934

Metagenome / Metatranscriptome

137

F057488

Metagenome

136

F060880

Metagenome / Metatranscriptome

132

F070538

Metagenome

123

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207597_100178	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1337	Open in IMG/M
Ga0207597_100253	All Organisms → cellular organisms → Bacteria → Proteobacteria	1234	Open in IMG/M
Ga0207597_100294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1187	Open in IMG/M
Ga0207597_100997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	846	Open in IMG/M
Ga0207597_101075	Not Available	828	Open in IMG/M
Ga0207597_101455	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	749	Open in IMG/M
Ga0207597_101496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	743	Open in IMG/M
Ga0207597_101658	Not Available	715	Open in IMG/M
Ga0207597_101847	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	688	Open in IMG/M
Ga0207597_101902	Not Available	681	Open in IMG/M
Ga0207597_101980	Not Available	672	Open in IMG/M
Ga0207597_102378	Not Available	629	Open in IMG/M
Ga0207597_102405	Not Available	627	Open in IMG/M
Ga0207597_102719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	601	Open in IMG/M
Ga0207597_102840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	591	Open in IMG/M
Ga0207597_102916	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
Ga0207597_103311	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	560	Open in IMG/M
Ga0207597_103546	All Organisms → cellular organisms → Archaea	547	Open in IMG/M
Ga0207597_104195	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207597_100178

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

1337

Open in IMG/M

Ga0207597_100253

All Organisms → cellular organisms → Bacteria → Proteobacteria

1234

Open in IMG/M

Ga0207597_100294

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae

1187

Open in IMG/M

Ga0207597_100997

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

846

Open in IMG/M

Ga0207597_101075

Not Available

828

Open in IMG/M

Ga0207597_101455

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon

749

Open in IMG/M

Ga0207597_101496

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

743

Open in IMG/M

Ga0207597_101658

Not Available

715

Open in IMG/M

Ga0207597_101847

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

688

Open in IMG/M

Ga0207597_101902

Not Available

681

Open in IMG/M

Ga0207597_101980

Not Available

672

Open in IMG/M

Ga0207597_102378

Not Available

629

Open in IMG/M

Ga0207597_102405

Not Available

627

Open in IMG/M

Ga0207597_102719

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

601

Open in IMG/M

Ga0207597_102840

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

591

Open in IMG/M

Ga0207597_102916

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

585

Open in IMG/M

Ga0207597_103311

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

560

Open in IMG/M

Ga0207597_103546

All Organisms → cellular organisms → Archaea

547

Open in IMG/M

Ga0207597_104195

All Organisms → cellular organisms → Bacteria

516

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207597_100178	Ga0207597_1001782	F001033	MNFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLRIAVFVFQMLGVTSVVHAERPDSTAGTSSADTRKLVIDPSSASVALWKASLIVSPLTYQDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207597_100253	Ga0207597_1002531	F021340	LQTFQAQRTIARSNEARSQFCHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFT
Ga0207597_100294	Ga0207597_1002942	F026346	SRVASIVMETDKKGRCEERQFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK
Ga0207597_100997	Ga0207597_1009972	F046248	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAE
Ga0207597_101075	Ga0207597_1010752	F017759	LLFGVVVGLLNSECPQQDRAYESKYGADSQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSILRGNDSTG
Ga0207597_101455	Ga0207597_1014551	F007651	MSNDLNELIARKDKLEGELHHKLSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNKLSAINQKLLADTYLSFATTI
Ga0207597_101496	Ga0207597_1014961	F035044	AAALGVGFVVAGGIGATMRLIMRRGREGTEKARFGPFSLVDRD
Ga0207597_101658	Ga0207597_1016582	F035451	MTMRKLTLLGVAVVVAAVIGSGTLAWVHNEAAPADHESATSYVVGPDGRLIGAAPNPSIRSQWE
Ga0207597_101847	Ga0207597_1018471	F056934	LARSSFRRIIWRVVQLKDAIEKFRDGPEGLEELVEALTAKFTPGNAMLLREAIAKQKSLQEVQTAADNYLKKRKNVAQWPTKQLEPELVRALVDYRSRLHKEDDWLLSRTGMREVASDFNLIHDYASQTKDLDAQLEVYGSLFLTQAQSAEFKSKSEEERKVYLESHAADKLEVLWYFVVSLCRLLQTKDYQLTPEEAYWLGVVDEVTGSGLQSDREMIEMILSSEPAT
Ga0207597_101902	Ga0207597_1019022	F044132	DRMAPVSRFGNENGQTTIKQGNGTFQFGGQRSFDQRYNTDNIFNPYARDGR
Ga0207597_101980	Ga0207597_1019801	F070538	LVGIVYTRSTFMMNGSDVQYANPFTGGVLLFTSAGFPPDRSIDYADAHADAGLALAIGGGFDIRLSKRIGLRAAMDYDPTFLVRRVFPDLTPDAEGRVVLRPAPNERQRQDHVRLSIGMVWRIR
Ga0207597_102378	Ga0207597_1023781	F057488	PITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVN
Ga0207597_102405	Ga0207597_1024052	F060880	MHTSADFRKTQRRRAELRSQSEAAVATIWLVFYVLGLVVAVSSPIVSRALEFA
Ga0207597_102719	Ga0207597_1027193	F054151	MRKVDQYTLADHFRALAEGLSLRAVSERAPAQRAELQRLAECYAELAKQQSPADYFARGAGPR
Ga0207597_102840	Ga0207597_1028401	F034737	ESVAYWLDRIVWDGKGLDQDIADREFRTGTKDSPVFVLAQAEATNGLGRLRVAINRKGKFPAKHLQPANVIAMLMGKKQSIELLGGDTALLKPDHDLARAQSAIDQNPAVIGGNKSAIPGTAAAEHGQAEHGI
Ga0207597_102916	Ga0207597_1029161	F025086	NWVWFGVAKLSRASCYKSNLMKKPIYAALDLHSRYSVLGSMDYDGNTQPKVRFPTSALLLRKNIEAQRQKKRPIYLTMEAGAFTRWASAIARPLVERLIICEPRHNRLINSNPTKSDEADVEGMCLLLRLGKLKEVWMGQDRTREIYRALVYELLNWRDAQRELKALIKARYRGWGVLRLHGIKVFAVKHREEYL
Ga0207597_103311	Ga0207597_1033113	F036981	MESHAFVVGLIVGILATVTMDVVAMMALWLGIASRGPRRTGPDLIGRWIGYLLQGKFRHTDIL
Ga0207597_103546	Ga0207597_1035461	F012397	VSVRIKRNKNNKKGVRWNRILILIVLVTTFSLLSGPGFAFGKIKNEINVTPPLNWEPSPTNNSTTMIWFQNSTKSIFAIIKAPDDLVFPLFIAGPFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSQLLDSSSGLIPKNEFLSKIPEGYDVPFRGML
Ga0207597_103783	Ga0207597_1037831	F000146	TDRMNQMRDEMQGREPPEGLNAKEIIVLHDPDTERSTVLVFFDNEDDYRQGDEILSNMDRGDTPGARTSVTRYDVAHRDSM
Ga0207597_104195	Ga0207597_1041951	F000336	SALGQISDESVAATKEEFQDLLSQAKGDTSELVRQNAEELERRLVLLKKRKIDKEDFDFFVENQKRDLRVFIDSQPAQSQERAEKLTLHILEIAATKVVPVLIMMI

Scaffold ID

Protein ID

Family

Sequence

Ga0207597_100178

Ga0207597_1001782

F001033

MNFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLRIAVFVFQMLGVTSVVHAERPDSTAGTSSADTRKLVIDPSSASVALWKASLIVSPLTYQDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP

Ga0207597_100253

Ga0207597_1002531

F021340

LQTFQAQRTIARSNEARSQFCHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFT

Ga0207597_100294

Ga0207597_1002942

F026346

SRVASIVMETDKKGRCEERQFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK

Ga0207597_100997

Ga0207597_1009972

F046248

MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAE

Ga0207597_101075

Ga0207597_1010752

F017759

LLFGVVVGLLNSECPQQDRAYESKYGADSQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSILRGNDSTG

Ga0207597_101455

Ga0207597_1014551

F007651

MSNDLNELIARKDKLEGELHHKLSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNKLSAINQKLLADTYLSFATTI

Ga0207597_101496

Ga0207597_1014961

F035044

AAALGVGFVVAGGIGATMRLIMRRGREGTEKARFGPFSLVDRD

Ga0207597_101658

Ga0207597_1016582

F035451

MTMRKLTLLGVAVVVAAVIGSGTLAWVHNEAAPADHESATSYVVGPDGRLIGAAPNPSIRSQWE

Ga0207597_101847

Ga0207597_1018471

F056934

LARSSFRRIIWRVVQLKDAIEKFRDGPEGLEELVEALTAKFTPGNAMLLREAIAKQKSLQEVQTAADNYLKKRKNVAQWPTKQLEPELVRALVDYRSRLHKEDDWLLSRTGMREVASDFNLIHDYASQTKDLDAQLEVYGSLFLTQAQSAEFKSKSEEERKVYLESHAADKLEVLWYFVVSLCRLLQTKDYQLTPEEAYWLGVVDEVTGSGLQSDREMIEMILSSEPAT

Ga0207597_101902

Ga0207597_1019022

F044132

DRMAPVSRFGNENGQTTIKQGNGTFQFGGQRSFDQRYNTDNIFNPYARDGR

Ga0207597_101980

Ga0207597_1019801

F070538

LVGIVYTRSTFMMNGSDVQYANPFTGGVLLFTSAGFPPDRSIDYADAHADAGLALAIGGGFDIRLSKRIGLRAAMDYDPTFLVRRVFPDLTPDAEGRVVLRPAPNERQRQDHVRLSIGMVWRIR

Ga0207597_102378

Ga0207597_1023781

F057488

PITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVN

Ga0207597_102405

Ga0207597_1024052

F060880

MHTSADFRKTQRRRAELRSQSEAAVATIWLVFYVLGLVVAVSSPIVSRALEFA

Ga0207597_102719

Ga0207597_1027193

F054151

MRKVDQYTLADHFRALAEGLSLRAVSERAPAQRAELQRLAECYAELAKQQSPADYFARGAGPR

Ga0207597_102840

Ga0207597_1028401

F034737

ESVAYWLDRIVWDGKGLDQDIADREFRTGTKDSPVFVLAQAEATNGLGRLRVAINRKGKFPAKHLQPANVIAMLMGKKQSIELLGGDTALLKPDHDLARAQSAIDQNPAVIGGNKSAIPGTAAAEHGQAEHGI

Ga0207597_102916

Ga0207597_1029161

F025086

NWVWFGVAKLSRASCYKSNLMKKPIYAALDLHSRYSVLGSMDYDGNTQPKVRFPTSALLLRKNIEAQRQKKRPIYLTMEAGAFTRWASAIARPLVERLIICEPRHNRLINSNPTKSDEADVEGMCLLLRLGKLKEVWMGQDRTREIYRALVYELLNWRDAQRELKALIKARYRGWGVLRLHGIKVFAVKHREEYL

Ga0207597_103311

Ga0207597_1033113

F036981

MESHAFVVGLIVGILATVTMDVVAMMALWLGIASRGPRRTGPDLIGRWIGYLLQGKFRHTDIL

Ga0207597_103546

Ga0207597_1035461

F012397

VSVRIKRNKNNKKGVRWNRILILIVLVTTFSLLSGPGFAFGKIKNEINVTPPLNWEPSPTNNSTTMIWFQNSTKSIFAIIKAPDDLVFPLFIAGPFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSQLLDSSSGLIPKNEFLSKIPEGYDVPFRGML

Ga0207597_103783

Ga0207597_1037831

F000146

TDRMNQMRDEMQGREPPEGLNAKEIIVLHDPDTERSTVLVFFDNEDDYRQGDEILSNMDRGDTPGARTSVTRYDVAHRDSM

Ga0207597_104195

Ga0207597_1041951

F000336

SALGQISDESVAATKEEFQDLLSQAKGDTSELVRQNAEELERRLVLLKKRKIDKEDFDFFVENQKRDLRVFIDSQPAQSQERAEKLTLHILEIAATKVVPVLIMMI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026742: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences