Metagenome Family F046248

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F046248
Family Type	Metagenome
Number of Sequences	151
Average Sequence Length	66 residues
Representative Sequence	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPASGGAITISVPNAMKPFPAELLPQ
Number of Associated Samples	119
Number of Associated Scaffolds	151

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	17.22 %
% of genes near scaffold ends (potentially truncated)	36.42 %
% of genes from short scaffolds (< 2000 bps)	89.40 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.252 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (10.596 % of family members)
Environment Ontology (ENVO)	Unclassified (27.152 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.993 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 43.75% β-sheet: 0.00% Coil/Unstructured: 56.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 151 Family Scaffolds
PF01381	HTH_3	18.54
PF04392	ABC_sub_bind	17.88
PF12844	HTH_19	4.64
PF00839	Cys_rich_FGFR	1.99
PF07045	DUF1330	1.99
PF13560	HTH_31	1.32
PF00664	ABC_membrane	0.66
PF07690	MFS_1	0.66
PF00884	Sulfatase	0.66
PF03466	LysR_substrate	0.66
PF02653	BPD_transp_2	0.66

COG ID	Name	Functional Category	% Frequency in 151 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	17.88
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.25 %
Unclassified	root	N/A	37.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.25 %
Unclassified	root	N/A	37.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.25 %
Unclassified	root	N/A	37.75 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.29 %
Unclassified	root	N/A	37.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.66 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.63 %
Unclassified	root	N/A	37.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	35.10 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.32 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.66 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.75 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	13.25 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.32 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.66 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.66 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.66 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.75 %
unclassified Methylocystaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae	13.25 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.32 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.66 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.66 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.66 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.75 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	13.25 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.32 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.66 %
Acidisphaera rubrifaciens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → Acidisphaera rubrifaciens	0.66 %
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	0.66 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.75 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	13.25 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.32 %
Bradyrhizobium sp. CCGB12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	0.66 %
Bradyrhizobium sp. CCBAU 53421	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 53421	0.66 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.66 %
Acidisphaera rubrifaciens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → Acidisphaera rubrifaciens	0.66 %
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	0.66 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_10279058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	846	Open in IMG/M
2162886012\|MBSR1b_contig_8717258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
2162886013\|SwBSRL2_contig_13399408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	866	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0422866	Not Available	549	Open in IMG/M
3300000891\|JGI10214J12806_11485535	Not Available	1501	Open in IMG/M
3300000953\|JGI11615J12901_10339642	Not Available	700	Open in IMG/M
3300002128\|JGI24036J26619_10064530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	724	Open in IMG/M
3300003911\|JGI25405J52794_10032902	Not Available	1081	Open in IMG/M
3300004114\|Ga0062593_101011883	Not Available	853	Open in IMG/M
3300004114\|Ga0062593_102832576	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300004156\|Ga0062589_100162358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1553	Open in IMG/M
3300004156\|Ga0062589_100336672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1189	Open in IMG/M
3300004156\|Ga0062589_100451664	Not Available	1065	Open in IMG/M
3300004156\|Ga0062589_101515909	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300004157\|Ga0062590_100242561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1348	Open in IMG/M
3300004157\|Ga0062590_101167482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	748	Open in IMG/M
3300004157\|Ga0062590_101232991	Not Available	732	Open in IMG/M
3300004463\|Ga0063356_100086491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3339	Open in IMG/M
3300004463\|Ga0063356_101503478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	997	Open in IMG/M
3300004463\|Ga0063356_106267264	Not Available	510	Open in IMG/M
3300004480\|Ga0062592_101841908	Not Available	593	Open in IMG/M
3300005162\|Ga0066814_10001982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1799	Open in IMG/M
3300005164\|Ga0066815_10030584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	807	Open in IMG/M
3300005168\|Ga0066809_10082561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	764	Open in IMG/M
3300005276\|Ga0065717_1005535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	877	Open in IMG/M
3300005290\|Ga0065712_10090598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2413	Open in IMG/M
3300005290\|Ga0065712_10093313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2297	Open in IMG/M
3300005329\|Ga0070683_101549244	Not Available	637	Open in IMG/M
3300005330\|Ga0070690_100024376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3719	Open in IMG/M
3300005331\|Ga0070670_100075276	All Organisms → cellular organisms → Bacteria → Proteobacteria	2900	Open in IMG/M
3300005332\|Ga0066388_101930192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 53421	1055	Open in IMG/M
3300005336\|Ga0070680_100412736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1152	Open in IMG/M
3300005336\|Ga0070680_101014794	Not Available	717	Open in IMG/M
3300005338\|Ga0068868_101977067	Not Available	553	Open in IMG/M
3300005340\|Ga0070689_100454769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1090	Open in IMG/M
3300005343\|Ga0070687_100577788	Not Available	769	Open in IMG/M
3300005344\|Ga0070661_101661420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	541	Open in IMG/M
3300005366\|Ga0070659_100747454	Not Available	848	Open in IMG/M
3300005406\|Ga0070703_10572748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	518	Open in IMG/M
3300005440\|Ga0070705_100325266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1112	Open in IMG/M
3300005440\|Ga0070705_101282530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	607	Open in IMG/M
3300005459\|Ga0068867_100157785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1787	Open in IMG/M
3300005536\|Ga0070697_100210003	Not Available	1657	Open in IMG/M
3300005543\|Ga0070672_100211923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1623	Open in IMG/M
3300005545\|Ga0070695_100347637	Not Available	1110	Open in IMG/M
3300005549\|Ga0070704_101256799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300005578\|Ga0068854_100219385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1504	Open in IMG/M
3300005618\|Ga0068864_102155404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	564	Open in IMG/M
3300005713\|Ga0066905_102065769	Not Available	530	Open in IMG/M
3300005764\|Ga0066903_102304453	Not Available	1040	Open in IMG/M
3300005764\|Ga0066903_104035174	Not Available	787	Open in IMG/M
3300005834\|Ga0068851_11001718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	527	Open in IMG/M
3300006804\|Ga0079221_11658745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	519	Open in IMG/M
3300006806\|Ga0079220_10633593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	768	Open in IMG/M
3300006854\|Ga0075425_100966831	Not Available	972	Open in IMG/M
3300006871\|Ga0075434_102316182	Not Available	540	Open in IMG/M
3300009011\|Ga0105251_10257960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	786	Open in IMG/M
3300009148\|Ga0105243_10407418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1265	Open in IMG/M
3300009156\|Ga0111538_10000744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44825	Open in IMG/M
3300009156\|Ga0111538_10831566	Not Available	1169	Open in IMG/M
3300009156\|Ga0111538_11548181	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300009162\|Ga0075423_12058082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	619	Open in IMG/M
3300009174\|Ga0105241_10918444	Not Available	814	Open in IMG/M
3300009177\|Ga0105248_10398610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1549	Open in IMG/M
3300009177\|Ga0105248_12469634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	592	Open in IMG/M
3300010046\|Ga0126384_12160835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	535	Open in IMG/M
3300010047\|Ga0126382_10259704	Not Available	1278	Open in IMG/M
3300010047\|Ga0126382_10726011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → Acidisphaera rubrifaciens	837	Open in IMG/M
3300010358\|Ga0126370_12205975	Not Available	543	Open in IMG/M
3300010359\|Ga0126376_11404514	Not Available	723	Open in IMG/M
3300010359\|Ga0126376_12049867	Not Available	615	Open in IMG/M
3300010359\|Ga0126376_13086665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300010360\|Ga0126372_11035456	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300010362\|Ga0126377_10172593	Not Available	2050	Open in IMG/M
3300010362\|Ga0126377_13244858	Not Available	526	Open in IMG/M
3300010371\|Ga0134125_11033239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	900	Open in IMG/M
3300010373\|Ga0134128_12367362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
3300010375\|Ga0105239_11708194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300010397\|Ga0134124_12859968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300010403\|Ga0134123_10485700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1158	Open in IMG/M
3300010403\|Ga0134123_11611040	Not Available	697	Open in IMG/M
3300010403\|Ga0134123_12616918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	572	Open in IMG/M
3300012495\|Ga0157323_1029226	Not Available	575	Open in IMG/M
3300012884\|Ga0157300_1016785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	931	Open in IMG/M
3300012897\|Ga0157285_10274216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	563	Open in IMG/M
3300012906\|Ga0157295_10428018	Not Available	501	Open in IMG/M
3300012943\|Ga0164241_10127022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1828	Open in IMG/M
3300013100\|Ga0157373_10895901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	658	Open in IMG/M
3300013100\|Ga0157373_10965327	Not Available	635	Open in IMG/M
3300014325\|Ga0163163_10011770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7951	Open in IMG/M
3300014968\|Ga0157379_11408557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	676	Open in IMG/M
3300015201\|Ga0173478_10503333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	607	Open in IMG/M
3300015261\|Ga0182006_1297197	Not Available	530	Open in IMG/M
3300015371\|Ga0132258_11333381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1813	Open in IMG/M
3300015371\|Ga0132258_13187195	Not Available	1132	Open in IMG/M
3300015372\|Ga0132256_100206286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2014	Open in IMG/M
3300015373\|Ga0132257_101584461	Not Available	837	Open in IMG/M
3300015374\|Ga0132255_102528332	Not Available	784	Open in IMG/M
3300017792\|Ga0163161_11647864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	567	Open in IMG/M
3300019356\|Ga0173481_10000910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	6807	Open in IMG/M
3300019356\|Ga0173481_10075907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1229	Open in IMG/M
3300019361\|Ga0173482_10292647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300023073\|Ga0247744_1013678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	1108	Open in IMG/M
3300023102\|Ga0247754_1012091	Not Available	1808	Open in IMG/M
3300023102\|Ga0247754_1064124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300025271\|Ga0207666_1013222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1157	Open in IMG/M
3300025271\|Ga0207666_1063409	Not Available	592	Open in IMG/M
3300025321\|Ga0207656_10271398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	835	Open in IMG/M
3300025711\|Ga0207696_1163999	Not Available	590	Open in IMG/M
3300025899\|Ga0207642_10995792	Not Available	540	Open in IMG/M
3300025912\|Ga0207707_10466187	Not Available	1080	Open in IMG/M
3300025917\|Ga0207660_11320969	Not Available	585	Open in IMG/M
3300025918\|Ga0207662_10631361	Not Available	747	Open in IMG/M
3300025930\|Ga0207701_10176827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1884	Open in IMG/M
3300025930\|Ga0207701_11492323	Not Available	548	Open in IMG/M
3300025935\|Ga0207709_11683293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300025941\|Ga0207711_11742361	Not Available	566	Open in IMG/M
3300025960\|Ga0207651_11641285	Not Available	579	Open in IMG/M
3300026078\|Ga0207702_11192269	Not Available	756	Open in IMG/M
3300026717\|Ga0207526_101611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	681	Open in IMG/M
3300026742\|Ga0207597_100997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	846	Open in IMG/M
3300026746\|Ga0207454_103850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300026753\|Ga0207528_104207	Not Available	551	Open in IMG/M
3300027252\|Ga0209973_1041040	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300027407\|Ga0207520_102925	Not Available	540	Open in IMG/M
3300027438\|Ga0207564_108086	Not Available	515	Open in IMG/M
3300027560\|Ga0207981_1097415	Not Available	542	Open in IMG/M
3300027682\|Ga0209971_1061250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	911	Open in IMG/M
3300027682\|Ga0209971_1081424	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300027695\|Ga0209966_1020110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1291	Open in IMG/M
3300027717\|Ga0209998_10006671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2397	Open in IMG/M
3300027775\|Ga0209177_10194907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	717	Open in IMG/M
3300027821\|Ga0209811_10148436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	868	Open in IMG/M
3300027876\|Ga0209974_10123103	Not Available	920	Open in IMG/M
3300027876\|Ga0209974_10160648	Not Available	815	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1032004	Not Available	1096	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1139517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300031538\|Ga0310888_10766243	Not Available	596	Open in IMG/M
3300031547\|Ga0310887_10009553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3495	Open in IMG/M
3300031547\|Ga0310887_10030629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2247	Open in IMG/M
3300031716\|Ga0310813_10009164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6343	Open in IMG/M
3300031716\|Ga0310813_11226574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300031740\|Ga0307468_100841065	Not Available	788	Open in IMG/M
3300031847\|Ga0310907_10009562	All Organisms → cellular organisms → Bacteria	2959	Open in IMG/M
3300031854\|Ga0310904_10451540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	852	Open in IMG/M
3300031944\|Ga0310884_11022862	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300032013\|Ga0310906_10180879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1261	Open in IMG/M
3300032075\|Ga0310890_10176542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1441	Open in IMG/M
3300033004\|Ga0335084_10901410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300033475\|Ga0310811_10039774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6274	Open in IMG/M
3300034820\|Ga0373959_0079765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.25%
Host-Associated	Host-Associated	37.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.25%
Plants	Host-Associated → Plants	37.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.22%
Roots	Host-Associated → Plants → Roots	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.91%
Loam	Environmental → Terrestrial → Soil → Loam	12.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.64%
Sand	Environmental → Terrestrial → Soil → Sand	1.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.66%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.18%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.65%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.66%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	10.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.62%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	6.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.30%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.32%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.32%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.32%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.32%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.32%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.66%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.66%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.66%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.66%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005276	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025711	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026717	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-12 (SPAdes)	Environmental	Open in IMG/M
3300026742	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-12 (SPAdes)	Environmental	Open in IMG/M
3300026746	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K2-12 (SPAdes)	Environmental	Open in IMG/M
3300026753	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-12 (SPAdes)	Environmental	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027407	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-12 (SPAdes)	Environmental	Open in IMG/M
3300027438	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3a-11 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0392.00006850	2162886012	Miscanthus Rhizosphere	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFP
MBSR1b_0353.00002200	2162886012	Miscanthus Rhizosphere	MREKSAIRRALPILVATVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ
SwBSRL2_0488.00002990	2162886013	Switchgrass Rhizosphere	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
ICChiseqgaiiDRAFT_04228662	3300000033	Soil	NRPTMKEKSAIRRALPILVAAVLLTAIFVDVVAAGVKAVSGRSRASYPASGGTVTVSVPNAMKSFPAELLPQ*
JGI10214J12806_114855354	3300000891	Soil	RRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ*
JGI11615J12901_103396421	3300000953	Soil	RASCPSMKKNFAIRRTLPILVAAALLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTVSVPNAMKNFPAELLPQ*
JGI24036J26619_100645302	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MXKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
JGI25405J52794_100329022	3300003911	Tabebuia Heterophylla Rhizosphere	MRRALPILVAAVLLTAILVDVVAAGVKAVTRGSRATYPASDGTVTVVVPDAMKSFPAELLPQ*
Ga0062593_1010118831	3300004114	Soil	MKEKSAIRRTLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTISVPNAMKGFPAELLPQ*
Ga0062593_1028325762	3300004114	Soil	MKKKHAMRRALPILVAAVLLTAIFVDVVAAGVKALSSRSRASYPASGGAITVTVPGTMKAFPSDLLPQ*
Ga0062589_1001623582	3300004156	Soil	MKPNHALRRTLPILVVAVLLTATLVDVVAAGVKAMSSRSRASYPVSAGTISVSVPGSMKAFPAELLPQ*
Ga0062589_1003366722	3300004156	Soil	MRHTSALRRAFPIIVAAVLLTAIFVDVVAAGVKAVSGRSRASYPASGGTVTVSVPNAMKSFPAELLPQ*
Ga0062589_1004516643	3300004156	Soil	MRRALPILVAAVLLTAIFVDVVAAGVKALSSRSRASYPASGGAITVTVPGTMKAFPSDLLPQ*
Ga0062589_1015159092	3300004156	Soil	MKHKSALRRALPILVAAVLLTAIFVDVVAAGVKAVSGRNRASYPASGGAVTISVPNAMKSFPAELLPQ*
Ga0062590_1002425612	3300004157	Soil	MRHTSALRRAFPILVAAVLLTAIFVDVVAAGVKAVSGRSRASYPASGGTVTVSVPNAMKSFPAELLPQ*
Ga0062590_1011674821	3300004157	Soil	VVAVLLTATLVDVVAAGVKAMSSRSRASYPVSAGTISVSVPGSMKAFPAELLPQ*
Ga0062590_1012329912	3300004157	Soil	MKKKYAMRRALPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTISVPNAMKGFPAELLPQ*
Ga0063356_1000864917	3300004463	Arabidopsis Thaliana Rhizosphere	MKKNFAIRRTLPILVAAALLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTVSVPNAMKNFPAELLPQ*
Ga0063356_1015034782	3300004463	Arabidopsis Thaliana Rhizosphere	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ*
Ga0063356_1062672641	3300004463	Arabidopsis Thaliana Rhizosphere	MKKKFAMRRALPILVAAVLLTAIFIDVVAAGVKALSSRSRSSYPASGGAVTVTVPGTMKAFPSELLPQ*
Ga0062592_1018419081	3300004480	Soil	MKQNHALRRALPILVVAVLLTATLVDVVAAGVKAMSSRSMSSRSRVSYPVAGAISVSVPDSMKAFPAELLPQ*
Ga0066814_100019822	3300005162	Soil	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPVSGGAITISMPNAMKAFPAELLPQ*
Ga0066815_100305843	3300005164	Soil	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPVSGGAITISVPNAMKAFPAELLPQ*
Ga0066809_100825612	3300005168	Soil	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKAFPAELLPQ*
Ga0065717_10055353	3300005276	Arabidopsis Rhizosphere	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0065712_100905983	3300005290	Miscanthus Rhizosphere	MREKSAIRRALPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ*
Ga0065712_100933133	3300005290	Miscanthus Rhizosphere	MRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0070683_1015492441	3300005329	Corn Rhizosphere	MKKNFAIRRALPILVAVVLLTAICVDVVAAGVKAVSRGNRAVYPASGSAVTMTAPTTVRNFPAALLPQ*
Ga0070690_1000243762	3300005330	Switchgrass Rhizosphere	MNKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0070670_1000752761	3300005331	Switchgrass Rhizosphere	QRICAIDASHSRMKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ*
Ga0066388_1019301921	3300005332	Tropical Forest Soil	MRRALPILVAAVLLTAILVDVVAAGVKAVTRGSRATYPASEGTVTVVVPDAMKSFPAELL
Ga0070680_1004127362	3300005336	Corn Rhizosphere	MRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAM
Ga0070680_1010147942	3300005336	Corn Rhizosphere	MRRALPILVAAVLLTAIFVDVVAAGVKALSSRSRASYPASGGAITVTVPGTMKAFPSELLPQ*
Ga0068868_1019770671	3300005338	Miscanthus Rhizosphere	MKKNFAIRRALPILVAVVLLTAICVDVVAAGVKAVSRGNRAAYPAAGGAVTMSAPNSVRNFPAALLPQ*
Ga0070689_1004547693	3300005340	Switchgrass Rhizosphere	MREKSAIRRVLPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ*
Ga0070687_1005777881	3300005343	Switchgrass Rhizosphere	ASRMREKSAIRRALPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ*
Ga0070661_1016614202	3300005344	Corn Rhizosphere	MAVTARLCDRCQASRMREKSAIRRAPPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ*
Ga0070659_1007474541	3300005366	Corn Rhizosphere	ILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTISVPNAMKGFPAELLPQ*
Ga0070703_105727482	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MNKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKAFPAELLPQ*
Ga0070705_1003252662	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKKKHAMRRALPILVAAVLLTAIFVDVVAAGVKALSSRSRASYPASGGAITVTVPGTMKAFPSELLPQ*
Ga0070705_1012825302	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKQNYALRRALPILVAAVLLTAIFVDVVAAGVKAISRRSRASYPVPDTAITVSVSNSMKAFPVELLPQ*
Ga0068867_1001577855	3300005459	Miscanthus Rhizosphere	KYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0070697_1002100035	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	IDASHSRMKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ*
Ga0070672_1002119231	3300005543	Miscanthus Rhizosphere	MDKKYSMRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0070695_1003476371	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKQNYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTISVPNAMKGFPAELLPQ*
Ga0070704_1012567991	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPF
Ga0068854_1002193853	3300005578	Corn Rhizosphere	MNKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMK
Ga0068864_1021554042	3300005618	Switchgrass Rhizosphere	MRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKAFPAELLPQ*
Ga0066905_1020657692	3300005713	Tropical Forest Soil	MRRALPVLVAAVLLTAIFVDVVAAGVKAVTRGSRAFYPAPDGNVTVSVPNALKSFPAELLPQ*
Ga0066903_1023044531	3300005764	Tropical Forest Soil	MRRALPVLVAAVLLTAIFVDVVAAGVKAVSRGSRVSYPVPDTAITVTVPNGMKSFPPELLPQ*
Ga0066903_1040351742	3300005764	Tropical Forest Soil	MRKKTSLRRALPLLVAAVLLTAIFVDVVAAGVKAVSRGSRASYPVPDTAITVTVPNGMKSFPAELLPQ*
Ga0068851_110017182	3300005834	Corn Rhizosphere	LPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPADLLPQ*
Ga0079221_116587452	3300006804	Agricultural Soil	MRRALPIIVAAVLLTAALVDVVAAGVKAVSGRSRASYPAAGGTITVSVPSGMKAFPSELLPQ*
Ga0079220_106335931	3300006806	Agricultural Soil	ALPILVAVVLLTAICVDVVAAGVKAVSRGNRAAYPASGGAVTMSAPNSVRNFPAALLPQ*
Ga0075425_1009668314	3300006854	Populus Rhizosphere	MKQKSALRRALPILVAAVLLTATFVDVVAAGVKAVSRGSRASYPVADPAITIPVPNAMKSFPAELLPR*
Ga0075434_1023161822	3300006871	Populus Rhizosphere	LRYCGKMKQKSALRRALPILVAAVLLTATFVDVVAAGVKAVSRGSRASYPVADPAITIPVPNAMKSFPAELLPR*
Ga0105251_102579601	3300009011	Switchgrass Rhizosphere	SAIRRAPPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ*
Ga0105243_104074184	3300009148	Miscanthus Rhizosphere	MNKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPVSGGAITISVPNAMKPFPAELLPQ*
Ga0111538_1000074466	3300009156	Populus Rhizosphere	MDKKYSLRRTLPIFVAAVLLTAVFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0111538_108315663	3300009156	Populus Rhizosphere	PIVVAVVLLTATFVDVVAAGVKAVSRGSRASYPVSDAAITVTAPNAMKAFPAELLPR*
Ga0111538_115481812	3300009156	Populus Rhizosphere	MREKFTLRHALPIVVAVVLLTATFVDVVAAGVKAVSRGSRASYPVSDAATTVTAPNAMKAFPAELLPW*
Ga0075423_120580821	3300009162	Populus Rhizosphere	MREKFTLRHALPIVVAVVLLTATFVDVVAAGVKAVSRGSRASYPVSDAATTVTAPNAMKAFPA
Ga0105241_109184441	3300009174	Corn Rhizosphere	YASGIGDKGGGGRQKRKSVMAVTARLCDRCQASRMREKSAIRRALPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ*
Ga0105248_103986103	3300009177	Switchgrass Rhizosphere	MREKSAIRRVLPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNA
Ga0105248_124696343	3300009177	Switchgrass Rhizosphere	RRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0126384_121608352	3300010046	Tropical Forest Soil	MRRVLPLLVAAVLLTAIFVDVVAAGVKAVSRGSRASYPAPDTNITVSVPSGMKSFPAELLPQ*
Ga0126382_102597041	3300010047	Tropical Forest Soil	MRKFSMRRALPILVAAVLLTAILVDVVAAGVKAVTRGSRATYPASEGTVTVVVPDAMKSFPAELLPQ*
Ga0126382_107260112	3300010047	Tropical Forest Soil	MRKVSMRRALPILVAAVLLTAILVDVVAAGVKAVTRGSRATYPASEGTVTVAVPDAMKSFPAELLPQ*
Ga0126370_122059752	3300010358	Tropical Forest Soil	MKQKSALRRALPILVAAALLTATFVDVVAAGVKAASRGSRVSYPVPDTAITVTVPNGMRSFPPELLPQ
Ga0126376_114045141	3300010359	Tropical Forest Soil	MRKKFSMRRALPILVAAVLLTAILVDVVAAGVKAVTRGSRATYPASEGTVTVAVPDAMKSFPAELLPQ*
Ga0126376_120498671	3300010359	Tropical Forest Soil	MEKKHTIRLIPVLVVAVLLTATLVDVVAAGVKAVSGRSRASYPAPGGSISVSVPDAMKPFPSELLPQ*
Ga0126376_130866652	3300010359	Tropical Forest Soil	MKKNFAIRRALPILVAVVLLTAICVDVVAAGVKAVSRGNRAAYPASGGAVTMTAPNSVRNFPAALLPQ*
Ga0126372_110354561	3300010360	Tropical Forest Soil	MRKKFSLRRALPVLVAAVLLAAIFADVVAAGVKAASRGSRASYPASDGTVTVVVPDAMKSFPAELLPQ*
Ga0126377_101725934	3300010362	Tropical Forest Soil	MRKKRAMRRALPVLVAAVLLTAIFVDVVVAGVKAVSRPGRASYPAPDAAITVTVPDSMKAFPRELLPQ*
Ga0126377_132448581	3300010362	Tropical Forest Soil	MRKKSSMRRALPLLVAAVLLTAIFVDVVAAGVKAVSRGSRASYPAPDTAMTVPVPNGMKSFPPELLPQ*
Ga0134125_110332392	3300010371	Terrestrial Soil	MREKLAIRRVLPILLAAVLLTAALVDVVTAGVKAVSGRSRAFYPAPGGTITVTVPSGMKAFPPELL
Ga0134128_123673622	3300010373	Terrestrial Soil	MDRKYSMRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0105239_117081942	3300010375	Corn Rhizosphere	MDRKYSMRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAM
Ga0134124_128599681	3300010397	Terrestrial Soil	MDRKYSMRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAEL
Ga0134123_104857001	3300010403	Terrestrial Soil	ALPILVAAVLLTAIFVDVVAAGVKAVSRRSRAFSPMSDTAITVSVPNSMKAFPAELLPQ*
Ga0134123_116110401	3300010403	Terrestrial Soil	MKRNHALRRTLPIFVVAVLLTATLVDVVAAGVKAMSSRSRASYPVSAGTISVSVPGSMKAFPAELLPQ*
Ga0134123_126169182	3300010403	Terrestrial Soil	MKQNYALRRALPILVAAVLLTAIFVDVVAAGVKAISRRSRASYLVPDTAITVSVSNSMKAFPVELLPQ*
Ga0157323_10292263	3300012495	Arabidopsis Rhizosphere	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLP
Ga0157300_10167853	3300012884	Soil	MDRKYSMRRVLPILVAAVLLTAIFVDVVAAGVKAVSGRNRASYPASGGAVTISVPNAMKPFPADLLPQ*
Ga0157285_102742161	3300012897	Soil	MKKNYAIRRALPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0157295_104280181	3300012906	Soil	IRANCSKMKKKYAMRRALPILVAAVLLTAIFVDVVAAGVKAVSRGSRVFYPASGGAVTISVPNAMKGFPAELLPQ*
Ga0164241_101270222	3300012943	Soil	MKQNHALRRALPILVVAVLLTATLVDVVAAGVKVMSSRSRASYPVSAGAISVSVPGSMKAFPAELLPQ*
Ga0157373_108959011	3300013100	Corn Rhizosphere	TLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0157373_109653271	3300013100	Corn Rhizosphere	MKQTDALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGINVSVPNAMKAFPAELLPQ*
Ga0163163_1001177010	3300014325	Switchgrass Rhizosphere	MREKSAIRRAPPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ*
Ga0157379_114085573	3300014968	Switchgrass Rhizosphere	SLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKAFPAELLPQ*
Ga0173478_105033333	3300015201	Soil	MDKKYSLRRTLPIFVVAVLLTATLVDVVAAGVKAMSSRSRASYPVSAGTISVSVPGSM
Ga0182006_12971971	3300015261	Rhizosphere	ILVAVVLLTAICVDVVAAGVKAVSRGNRAAYPASGGAVTMTTPNSVRNFPAALLPQ*
Ga0132258_113333813	3300015371	Arabidopsis Rhizosphere	MKKNYAMRRALPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTVSVPNAMKGFPAELLPQ*
Ga0132258_131871953	3300015371	Arabidopsis Rhizosphere	MKKNYAIRRALPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTVSVPNAMKGFPAELLPQ*
Ga0132256_1002062862	3300015372	Arabidopsis Rhizosphere	MKKNYAIRRALPILLAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ*
Ga0132257_1015844611	3300015373	Arabidopsis Rhizosphere	MKEKSAIRRTLPILVAVVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTVSVPNAMKGFPAELLPQ*
Ga0132255_1025283322	3300015374	Arabidopsis Rhizosphere	MKEKSAIRRALPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTVSVPNAMKGFPAELLPQ*
Ga0163161_116478642	3300017792	Switchgrass Rhizosphere	RSQRICAIGASHSRMKQNYALRRALPILVAAVLLTAIFVDVVAAGVKAISRRSRASYPVPDTAITVSVPNSMKAFPAELLPQ
Ga0173481_100009106	3300019356	Soil	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ
Ga0173481_100759072	3300019356	Soil	MRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0173482_102926471	3300019361	Soil	MKRNHALRRTLPIFVVAVLLTATLVDVVAAGVKAMSSRSRASYPVSAGTISVSVPGSMKAFPAELLPQ
Ga0247744_10136781	3300023073	Soil	LRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0247754_10120911	3300023102	Soil	SHSRMKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ
Ga0247754_10641243	3300023102	Soil	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAE
Ga0207666_10132223	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKAFPAELLPQ
Ga0207666_10634091	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MKEKSAIRRTLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTISVPNAMKGFPAELLPQ
Ga0207656_102713982	3300025321	Corn Rhizosphere	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKPFPADLLPQ
Ga0207696_11639991	3300025711	Switchgrass Rhizosphere	VAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ
Ga0207642_109957922	3300025899	Miscanthus Rhizosphere	MDKKYSMRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMNPFPAELLPQ
Ga0207707_104661872	3300025912	Corn Rhizosphere	MKKNFAIRRALPILVAVVLLTAICVDVVAAGVKAVSRGNRAVYPASGSAVTMTAPTTVRNFPAALLPQ
Ga0207660_113209691	3300025917	Corn Rhizosphere	AMRRALPILVAAVLLTAIFVDVVAAGVKALSSRSRASYPASGGAITVTVPGTMKAFPSELLPQ
Ga0207662_106313612	3300025918	Switchgrass Rhizosphere	IRRALPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ
Ga0207701_101768272	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKQNYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTAITVSVPNSMKAFPVELLPQ
Ga0207701_114923231	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMK
Ga0207709_116832932	3300025935	Miscanthus Rhizosphere	MNKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPVSGGAITISVPNAMKAFPAELLPQ
Ga0207711_117423611	3300025941	Switchgrass Rhizosphere	MREKSAIRRVLPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ
Ga0207651_116412851	3300025960	Switchgrass Rhizosphere	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPN
Ga0207702_111922691	3300026078	Corn Rhizosphere	VMAVTARLCDRCQASRMREKSAIRRAPPILVAAVLLTAIFVDVVAAGVKAVSGKSRASYPAAGGTVTISVPNAMKNFPAELLPQ
Ga0207526_1016112	3300026717	Soil	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0207597_1009972	3300026742	Soil	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAE
Ga0207454_1038502	3300026746	Soil	KYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ
Ga0207528_1042072	3300026753	Soil	LRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKAFPAELLPQ
Ga0209973_10410402	3300027252	Arabidopsis Thaliana Rhizosphere	MRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKAFPAELLPQ
Ga0207520_1029251	3300027407	Soil	ICAIDASHSRMKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ
Ga0207564_1080861	3300027438	Soil	LPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ
Ga0207981_10974151	3300027560	Soil	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKP
Ga0209971_10612502	3300027682	Arabidopsis Thaliana Rhizosphere	MKHKSALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAMKAFPAELLPQ
Ga0209971_10814241	3300027682	Arabidopsis Thaliana Rhizosphere	MKKKHAMRRALPILVAAVLLTAILVDVVAAGVKALSSRSRASYPASGGAVTITVPGTMKVFPSELLPQ
Ga0209966_10201102	3300027695	Arabidopsis Thaliana Rhizosphere	MRRALPILVAAVLLTAILVDVVAAGVKALSSRSRASYPASGGAVTITVPGTMKVFPSELLPQ
Ga0209998_100066713	3300027717	Arabidopsis Thaliana Rhizosphere	MRRALPILVAAVLLTAILVDVVAAGVKALSSRSRASYPASGGAVTITVPGTIKAFPSELLPQ
Ga0209177_101949072	3300027775	Agricultural Soil	MRRALPIIVAAVLLTAALVDVVAAGVKAVSGRSRASYPAAGGTITVSVPSGMKAFPSELLPQ
Ga0209811_101484363	3300027821	Surface Soil	MDKKYSMRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0209974_101231032	3300027876	Arabidopsis Thaliana Rhizosphere	MKKKHAMRRALPILVAAVLLTAIFVDVVAAGVKVLSSRSRSSYPASGGAVTVTVPGTMKAFPSELLPQ
Ga0209974_101606482	3300027876	Arabidopsis Thaliana Rhizosphere	MKKKYAMRRALPILVAAVLLTAIFVDVVAAGVKAVSRGSRVFYPASGGAVTISVPNAMKGFPAELLPQ
(restricted) Ga0255311_10320041	3300031150	Sandy Soil	MKKKHAMRRALPILVAVVLLTAILVDVVAAGVKALSSRSRSSYPAASGGAVTVTVPGTMKAFPSELLPQ
(restricted) Ga0255312_11395171	3300031248	Sandy Soil	MNKKYSLRRALPILVAAVLLTAIFVDVVAAGVKAVSRGGRASYPASGGAVTISVPNAMKAFPAELLPQ
Ga0310888_107662431	3300031538	Soil	SMRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0310887_100095533	3300031547	Soil	MNKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKAFPAELLPQ
Ga0310887_100306294	3300031547	Soil	MDKKYSLRRTLPIFVAAVLLTAVFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0310813_100091645	3300031716	Soil	MRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAE
Ga0310813_112265742	3300031716	Soil	MKKNFAIRRTLPILVAAALLTAIFVDVVAAGVKAVSRRSRASYPASGGAVTVSVPNAMKNFPAELLPQ
Ga0307468_1008410652	3300031740	Hardwood Forest Soil	MRRALPILVAAVLLTAILVDVVAASVKTVTRGSRVSYPAPEAGITVTVPNSMKAFPAELLPQ
Ga0310907_100095621	3300031847	Soil	FSKMNKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0310904_104515403	3300031854	Soil	MDKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKA
Ga0310884_110228621	3300031944	Soil	MRRALPILVAAVLLTAIFVDVVAAGVKAVSRGSRVFYPASGGAVTISVPNAMKGFPAELLPQ
Ga0310906_101808792	3300032013	Soil	MNKKYSLRRTLPIFVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0310890_101765422	3300032075	Soil	LKMDKKYSMRRVLPILVAAVLLTAIFVDVVAAGVKAVSRGSRASYPASGGAITISVPNAMKPFPAELLPQ
Ga0335084_109014102	3300033004	Soil	MKEKSAIRRALPILVAAVLLTAILVDVVAAGVKAVSRGSRASYPASGGAVTVSVPNAMKGFPAELLPQ
Ga0310811_100397746	3300033475	Soil	MKKNFAIRRTLPILVAAALLTAIFVDVVAAGVKAVSRGSRASYPASGGAVTVSVPNAMKNFPAELLPQ
Ga0373959_0079765_1_174	3300034820	Rhizosphere Soil	MKQKYALRRALPILVAAVLLTAIFVDVVAAGVKAVSRRSRASYPVPDTGITVSVPNAM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters