Sample 3300026733

Overview

Basic Information
IMG/M Taxon OID	3300026733 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072078 \| Ga0207550
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	20309533
Sequencing Scaffolds	21
Novel Protein Genes	21
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000569	Metagenome / Metatranscriptome	1018	Y
F002896	Metagenome / Metatranscriptome	522	N
F014308	Metagenome / Metatranscriptome	264	Y
F020078	Metagenome / Metatranscriptome	226	Y
F028554	Metagenome / Metatranscriptome	191	N
F031088	Metagenome / Metatranscriptome	183	Y
F032686	Metagenome	179	Y
F035133	Metagenome	173	Y
F042319	Metagenome / Metatranscriptome	158	Y
F045439	Metagenome / Metatranscriptome	153	Y
F053375	Metagenome	141	N
F056406	Metagenome	137	N
F060880	Metagenome / Metatranscriptome	132	N
F062527	Metagenome / Metatranscriptome	130	Y
F065229	Metagenome / Metatranscriptome	128	Y
F068052	Metagenome	125	Y
F070698	Metagenome / Metatranscriptome	123	N
F071393	Metagenome	122	N
F078898	Metagenome	116	N
F097649	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

F000569

Metagenome / Metatranscriptome

1018

F002896

Metagenome / Metatranscriptome

522

F014308

Metagenome / Metatranscriptome

264

F020078

Metagenome / Metatranscriptome

226

F028554

Metagenome / Metatranscriptome

191

F031088

Metagenome / Metatranscriptome

183

F032686

Metagenome

179

F035133

Metagenome

173

F042319

Metagenome / Metatranscriptome

158

F045439

Metagenome / Metatranscriptome

153

F053375

Metagenome

141

F056406

Metagenome

137

F060880

Metagenome / Metatranscriptome

132

F062527

Metagenome / Metatranscriptome

130

F065229

Metagenome / Metatranscriptome

128

F068052

Metagenome

125

F070698

Metagenome / Metatranscriptome

123

F071393

Metagenome

122

F078898

Metagenome

116

F097649

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207550_100401	Not Available	1045	Open in IMG/M
Ga0207550_100447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1014	Open in IMG/M
Ga0207550_100842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	852	Open in IMG/M
Ga0207550_100876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	841	Open in IMG/M
Ga0207550_100960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	814	Open in IMG/M
Ga0207550_100962	All Organisms → cellular organisms → Archaea	814	Open in IMG/M
Ga0207550_100971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1	810	Open in IMG/M
Ga0207550_101098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	776	Open in IMG/M
Ga0207550_101424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	711	Open in IMG/M
Ga0207550_101737	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
Ga0207550_101820	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
Ga0207550_101880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	644	Open in IMG/M
Ga0207550_102081	Not Available	622	Open in IMG/M
Ga0207550_102264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	604	Open in IMG/M
Ga0207550_102485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	584	Open in IMG/M
Ga0207550_102632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
Ga0207550_102740	All Organisms → cellular organisms → Archaea	565	Open in IMG/M
Ga0207550_102751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	565	Open in IMG/M
Ga0207550_102808	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
Ga0207550_102957	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
Ga0207550_103032	Not Available	546	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207550_100401

Not Available

1045

Open in IMG/M

Ga0207550_100447

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

1014

Open in IMG/M

Ga0207550_100842

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

852

Open in IMG/M

Ga0207550_100876

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis

841

Open in IMG/M

Ga0207550_100960

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

814

Open in IMG/M

Ga0207550_100962

All Organisms → cellular organisms → Archaea

814

Open in IMG/M

Ga0207550_100971

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1

810

Open in IMG/M

Ga0207550_101098

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

776

Open in IMG/M

Ga0207550_101424

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium

711

Open in IMG/M

Ga0207550_101737

All Organisms → cellular organisms → Bacteria

664

Open in IMG/M

Ga0207550_101820

All Organisms → cellular organisms → Bacteria → Acidobacteria

652

Open in IMG/M

Ga0207550_101880

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae

644

Open in IMG/M

Ga0207550_102081

Not Available

622

Open in IMG/M

Ga0207550_102264

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21

604

Open in IMG/M

Ga0207550_102485

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

584

Open in IMG/M

Ga0207550_102632

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

572

Open in IMG/M

Ga0207550_102740

All Organisms → cellular organisms → Archaea

565

Open in IMG/M

Ga0207550_102751

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus

565

Open in IMG/M

Ga0207550_102808

All Organisms → cellular organisms → Bacteria

561

Open in IMG/M

Ga0207550_102957

All Organisms → cellular organisms → Bacteria

550

Open in IMG/M

Ga0207550_103032

Not Available

546

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207550_100401	Ga0207550_1004012	F078898	MDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLT
Ga0207550_100447	Ga0207550_1004472	F031088	MKLNVLAVALAASAIGAFSANAQVVIEERRDPAVVIEHDRPNTSVTVEKRDGFLGTEKKTITKETTGSGDCSSKTVHKEDITG
Ga0207550_100842	Ga0207550_1008421	F042319	MTDITYQTTTIGIADQSALLSRIAAWCTHFVEGVREGQEIAARYHALAQLSSPELARRGLNRHMIARVALTGY
Ga0207550_100876	Ga0207550_1008762	F032686	EQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK
Ga0207550_100960	Ga0207550_1009601	F045439	MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNG
Ga0207550_100962	Ga0207550_1009621	F002896	IYGMDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGELSPVEASKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGYCQNIDHPHGDTNPRLCKEGTIFHQDLYNECVKTFKDLLIHSDAQHH
Ga0207550_100971	Ga0207550_1009712	F035133	KVFTDRTSRTAIDARIAEERRNPVESWNELTAAREDNDLSFDKVEYEIKPAKWPWLVHII
Ga0207550_101098	Ga0207550_1010982	F014308	MTFMSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKVA
Ga0207550_101424	Ga0207550_1014243	F097649	MVDAEAMNPAAGKKRRRRSILTKDVMAGIPVLVQQGLNAEAIAARLGCTAGTLKVRCSQAQISLRAPKEVKVVPLVPLVPSANPPQPPKQTRSSAFAMPTTLQLSRVAMSRLRQR
Ga0207550_101737	Ga0207550_1017371	F060880	MRISADFRKTQRRRAELHSRSEAMVATIWLVFYVLGIAVAVSSPIVSRALEFAAH
Ga0207550_101820	Ga0207550_1018201	F053375	MHVTPFSAATILVFAIASPSRAQGIEVFGGYSANADYVQNRPAILIVDQKVSPFFSLGSGPTGFEASFKHDVR
Ga0207550_101880	Ga0207550_1018801	F028554	AALTGLFFLAAFVTAGSFLSTDPQAMSSVSKVTQLPRTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK
Ga0207550_102081	Ga0207550_1020812	F056406	SGWSALRQEATATKPPVSVTEQYTGSIIIVPTRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE
Ga0207550_102264	Ga0207550_1022641	F020078	MHSATRFCWQSGAIALAAIIFAFLVPGVALCKLVSLASIASAITITTFVAGFGLYLAGQLIEKRTPQSERVDHCLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAGCGVAGALLLIRRARRLAANGSNLAKSTN
Ga0207550_102485	Ga0207550_1024852	F065229	TIPAMLLIRFAISIFALTLLGLAISLSVAQSEQETNAARAAALIHQ
Ga0207550_102632	Ga0207550_1026321	F062527	LLSLGACVLVARHLSDASWPLEGARAPLVVLAGCSYLGSFGFRAFGWHQLFPRRERPDGARCLAACGAAAASGVVLPFRLDYVVKISTLRGLGGVTLGLETIAVSIVALGMVDAVAMLPLAISALAMSGPVLRAPLIVVVLFCIGCLGILTLGQRLARLPLVSRSHRLHAVYRRVADSTRFSRPTLIAGL
Ga0207550_102740	Ga0207550_1027401	F070698	MVILNISEIWNNGHNTTFRDSHLEDDNSEILSNGNAPYVIKSNGDCMIIVHADALGVSKNFGDGH
Ga0207550_102751	Ga0207550_1027512	F068052	VVSLKNREWPKLTPAAVTDFERVLASQESHVVSILPTDRDSIFFARDLVDAFKRIGWKAKRDVSMNDIPDGLSVWPQDDVARAICNALTMATGALVAVREDQHLKDQGTYAIGVGYKLI
Ga0207550_102808	Ga0207550_1028082	F097649	MMNAEAMNSVTGKKRGGRRSILTKDVMAGIPVLVQQGLTAEAIAARLGCTVGTLKVRCSQAQISLRVPKEVKVVPLVPLAPVPTTPKSSQSKRCFAFAVPTTLQLSRVAMSRLRQRANAMGVTEAALATTL
Ga0207550_102957	Ga0207550_1029571	F000569	YWVLIWLPFDKNRFQFMAIPYLVLPFVGALAAYWSRRMKGSVLERIVSSLFPVFAFVALFAVRIVYGLFFEGEPYTLPHFRAGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQMP
Ga0207550_103032	Ga0207550_1030322	F071393	LQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQQKSMLEIRLQEKEALAATQAATIKQLEGVRDELDKRFRVIEALLTSEREAAERKTRRTADGPPAAAG

Scaffold ID

Protein ID

Family

Sequence

Ga0207550_100401

Ga0207550_1004012

F078898

MDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLT

Ga0207550_100447

Ga0207550_1004472

F031088

MKLNVLAVALAASAIGAFSANAQVVIEERRDPAVVIEHDRPNTSVTVEKRDGFLGTEKKTITKETTGSGDCSSKTVHKEDITG

Ga0207550_100842

Ga0207550_1008421

F042319

MTDITYQTTTIGIADQSALLSRIAAWCTHFVEGVREGQEIAARYHALAQLSSPELARRGLNRHMIARVALTGY

Ga0207550_100876

Ga0207550_1008762

F032686

EQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK

Ga0207550_100960

Ga0207550_1009601

F045439

MSRSGFSRRTFLQGSVGLTVANFVPGTTPFAHAATMEEQTIAAAKAAGKADVNG

Ga0207550_100962

Ga0207550_1009621

F002896

IYGMDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGELSPVEASKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGYCQNIDHPHGDTNPRLCKEGTIFHQDLYNECVKTFKDLLIHSDAQHH

Ga0207550_100971

Ga0207550_1009712

F035133

KVFTDRTSRTAIDARIAEERRNPVESWNELTAAREDNDLSFDKVEYEIKPAKWPWLVHII

Ga0207550_101098

Ga0207550_1010982

F014308

MTFMSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKVA

Ga0207550_101424

Ga0207550_1014243

F097649

MVDAEAMNPAAGKKRRRRSILTKDVMAGIPVLVQQGLNAEAIAARLGCTAGTLKVRCSQAQISLRAPKEVKVVPLVPLVPSANPPQPPKQTRSSAFAMPTTLQLSRVAMSRLRQR

Ga0207550_101737

Ga0207550_1017371

F060880

MRISADFRKTQRRRAELHSRSEAMVATIWLVFYVLGIAVAVSSPIVSRALEFAAH

Ga0207550_101820

Ga0207550_1018201

F053375

MHVTPFSAATILVFAIASPSRAQGIEVFGGYSANADYVQNRPAILIVDQKVSPFFSLGSGPTGFEASFKHDVR

Ga0207550_101880

Ga0207550_1018801

F028554

AALTGLFFLAAFVTAGSFLSTDPQAMSSVSKVTQLPRTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK

Ga0207550_102081

Ga0207550_1020812

F056406

SGWSALRQEATATKPPVSVTEQYTGSIIIVPTRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE

Ga0207550_102264

Ga0207550_1022641

F020078

MHSATRFCWQSGAIALAAIIFAFLVPGVALCKLVSLASIASAITITTFVAGFGLYLAGQLIEKRTPQSERVDHCLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAGCGVAGALLLIRRARRLAANGSNLAKSTN

Ga0207550_102485

Ga0207550_1024852

F065229

TIPAMLLIRFAISIFALTLLGLAISLSVAQSEQETNAARAAALIHQ

Ga0207550_102632

Ga0207550_1026321

F062527

LLSLGACVLVARHLSDASWPLEGARAPLVVLAGCSYLGSFGFRAFGWHQLFPRRERPDGARCLAACGAAAASGVVLPFRLDYVVKISTLRGLGGVTLGLETIAVSIVALGMVDAVAMLPLAISALAMSGPVLRAPLIVVVLFCIGCLGILTLGQRLARLPLVSRSHRLHAVYRRVADSTRFSRPTLIAGL

Ga0207550_102740

Ga0207550_1027401

F070698

MVILNISEIWNNGHNTTFRDSHLEDDNSEILSNGNAPYVIKSNGDCMIIVHADALGVSKNFGDGH

Ga0207550_102751

Ga0207550_1027512

F068052

VVSLKNREWPKLTPAAVTDFERVLASQESHVVSILPTDRDSIFFARDLVDAFKRIGWKAKRDVSMNDIPDGLSVWPQDDVARAICNALTMATGALVAVREDQHLKDQGTYAIGVGYKLI

Ga0207550_102808

Ga0207550_1028082

F097649

MMNAEAMNSVTGKKRGGRRSILTKDVMAGIPVLVQQGLTAEAIAARLGCTVGTLKVRCSQAQISLRVPKEVKVVPLVPLAPVPTTPKSSQSKRCFAFAVPTTLQLSRVAMSRLRQRANAMGVTEAALATTL

Ga0207550_102957

Ga0207550_1029571

F000569

YWVLIWLPFDKNRFQFMAIPYLVLPFVGALAAYWSRRMKGSVLERIVSSLFPVFAFVALFAVRIVYGLFFEGEPYTLPHFRAGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQMP

Ga0207550_103032

Ga0207550_1030322

F071393

LQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQQKSMLEIRLQEKEALAATQAATIKQLEGVRDELDKRFRVIEALLTSEREAAERKTRRTADGPPAAAG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026733: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences