NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026372

3300026372: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F5



Overview

Basic Information
IMG/M Taxon OID3300026372 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133548 | Gp0296337 | Ga0256804
Sample NameSediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F5
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size114007101
Sequencing Scaffolds42
Novel Protein Genes43
Associated Families39

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium2
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria7
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella → Niastella koreensis1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Imshaugia → Imshaugia aleurites1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomefreshwater marshsediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)31.3377Long. (o)-81.4644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000445Metagenome / Metatranscriptome1131Y
F001823Metagenome / Metatranscriptome630Y
F003059Metagenome / Metatranscriptome510Y
F010544Metagenome / Metatranscriptome302Y
F014308Metagenome / Metatranscriptome264Y
F015034Metagenome258Y
F017154Metagenome / Metatranscriptome242Y
F020378Metagenome / Metatranscriptome224Y
F020966Metagenome / Metatranscriptome221Y
F031548Metagenome / Metatranscriptome182Y
F032451Metagenome / Metatranscriptome180Y
F032705Metagenome179Y
F034869Metagenome173Y
F034983Metagenome173Y
F040358Metagenome / Metatranscriptome162N
F048543Metagenome / Metatranscriptome148Y
F052804Metagenome142Y
F054979Metagenome / Metatranscriptome139Y
F055103Metagenome / Metatranscriptome139Y
F055828Metagenome / Metatranscriptome138Y
F056714Metagenome137Y
F057478Metagenome136Y
F058543Metagenome135N
F060311Metagenome / Metatranscriptome133Y
F060457Metagenome / Metatranscriptome133Y
F062909Metagenome / Metatranscriptome130Y
F062963Metagenome / Metatranscriptome130N
F067864Metagenome / Metatranscriptome125Y
F070240Metagenome123Y
F071793Metagenome / Metatranscriptome122Y
F076225Metagenome / Metatranscriptome118Y
F077460Metagenome / Metatranscriptome117Y
F080803Metagenome / Metatranscriptome114Y
F082880Metagenome / Metatranscriptome113Y
F086926Metagenome / Metatranscriptome110Y
F094061Metagenome106Y
F094338Metagenome106Y
F094847Metagenome / Metatranscriptome105Y
F098592Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256804_1000975Not Available1761Open in IMG/M
Ga0256804_1001054All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1719Open in IMG/M
Ga0256804_1002102All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae1412Open in IMG/M
Ga0256804_1002221All Organisms → cellular organisms → Bacteria → Proteobacteria1388Open in IMG/M
Ga0256804_1002446All Organisms → cellular organisms → Bacteria → Proteobacteria1346Open in IMG/M
Ga0256804_1002751All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1295Open in IMG/M
Ga0256804_1004690All Organisms → cellular organisms → Bacteria → Proteobacteria1084Open in IMG/M
Ga0256804_1004782All Organisms → cellular organisms → Bacteria1076Open in IMG/M
Ga0256804_1005140Not Available1051Open in IMG/M
Ga0256804_1005197All Organisms → cellular organisms → Bacteria1047Open in IMG/M
Ga0256804_1005439All Organisms → cellular organisms → Bacteria1032Open in IMG/M
Ga0256804_1006400All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria972Open in IMG/M
Ga0256804_1007324Not Available927Open in IMG/M
Ga0256804_1008313All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria884Open in IMG/M
Ga0256804_1009019All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria859Open in IMG/M
Ga0256804_1010775All Organisms → cellular organisms → Bacteria → Proteobacteria804Open in IMG/M
Ga0256804_1011018All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium797Open in IMG/M
Ga0256804_1011508Not Available784Open in IMG/M
Ga0256804_1012873All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium753Open in IMG/M
Ga0256804_1012924Not Available752Open in IMG/M
Ga0256804_1013584Not Available739Open in IMG/M
Ga0256804_1013588All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria739Open in IMG/M
Ga0256804_1014705All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium720Open in IMG/M
Ga0256804_1016723All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium687Open in IMG/M
Ga0256804_1017819Not Available672Open in IMG/M
Ga0256804_1018695All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria660Open in IMG/M
Ga0256804_1019151Not Available655Open in IMG/M
Ga0256804_1020450Not Available639Open in IMG/M
Ga0256804_1023747All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria606Open in IMG/M
Ga0256804_1025148All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria594Open in IMG/M
Ga0256804_1025212All Organisms → cellular organisms → Bacteria593Open in IMG/M
Ga0256804_1025322All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium592Open in IMG/M
Ga0256804_1025607All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria590Open in IMG/M
Ga0256804_1026203All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium585Open in IMG/M
Ga0256804_1027059All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium578Open in IMG/M
Ga0256804_1029552All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium560Open in IMG/M
Ga0256804_1030985All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niastella → Niastella koreensis551Open in IMG/M
Ga0256804_1033341All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium538Open in IMG/M
Ga0256804_1033540All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Imshaugia → Imshaugia aleurites537Open in IMG/M
Ga0256804_1034030Not Available534Open in IMG/M
Ga0256804_1039011Not Available509Open in IMG/M
Ga0256804_1040962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256804_1000975Ga0256804_10009751F062909LAGVPGADGKTLYLMSLARTRLDPPTGMLAGALMGKVKGGIEQGVKESLKNAQAHLAAH
Ga0256804_1001054Ga0256804_10010543F001823VPAHCRMRAIDRDLIRGGHYGQRPRVPHLKAEHMAAPTNAANVKKVLANS
Ga0256804_1002102Ga0256804_10021021F017154VTSPFLEPVRSTWSRVAGVAVLAGGLVLTAVLAYELFDLATDAASRRMFNSSSMIFGLVLLALNGICWQAGYRLVFQRPDRTGTLFSRPAWFAIGTGLLVITILMAIRIVQARTPTLLDVQVVLFLAGIGVWCLVLALRRDGTAQ
Ga0256804_1002221Ga0256804_10022211F001823MRACDRDLIRGGHYGQRPRVPHLKAEHMAAPTNAANVKKVLVNS
Ga0256804_1002446Ga0256804_10024462F001823MRAIDRDLIRGGHYGQRPCVPHLKAEHMAAPTNAANVKKALA
Ga0256804_1002466Ga0256804_10024661F034983AVARRDERVSLPAVLAELDDDARRLMSEIAVEGVPEDGLSAEECVRELRRQPLRARMADIQKRLAGASGEAQEALLAEKTRLVRQMTGL
Ga0256804_1002751Ga0256804_10027511F077460MSVVVRPIGLLKAFCRDRLDEQDRVVLPDRNGCTLETVCQEIGLPKGLVSLFIVNGHIEENSYRLQAGDEVKCVAIIGGG
Ga0256804_1004690Ga0256804_10046901F014308MSDCSIGIQVIMPQTGTSPKSTPAQQANEREAATPPVTRQAPPPPGMGKFVDKTA
Ga0256804_1004782Ga0256804_10047822F058543METVTISGNINEKKKAEFFQTMESLTGLVEKQCHGLDIRVKDDHSLIIKITFDGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINDTAVNNN
Ga0256804_1005140Ga0256804_10051401F094338ALSVLRKEGVKNPEYSYPRVAAAMRERPIPEVKGVQAVMDSVKTSKSKVTLAKDVMDGSLIEEIDKTGYITKLYGK
Ga0256804_1005197Ga0256804_10051971F055828MLTRDKLRADQWRAVRNTPHHVIVAVSATGGSPFDEMLERSAGLQGIVDAMHSTHPLVREIADSTQIMQAQDEIREWYYTLPDAQRI
Ga0256804_1005439Ga0256804_10054393F082880FPYVNSARRIEHVGGNQFAIEEWICPLTVKHLSENPKMAVLIWDPASDDGYEILGELLMFESQAFLNGFAPEMEENIYLPQVKRRLIIRAEKITAFSHALRCDEIQMLAASRAKVTYSTRDDGDGRREVPLCTFAPEWAEHARYDRSDDPCDDGRAGAV
Ga0256804_1006400Ga0256804_10064002F071793MENRNSNRHKTDQSIVFTFFTSHSFNNAFDGKMKNYCACGLYAELQTRFKDGTVLLARTTSNPTERLPAKIEEGFRSISLVEVKWSKPLSSNGVVYYGTGLK
Ga0256804_1007324Ga0256804_10073241F020966MRTPRRRLCVGLLAALLWQPLLAQRMVGGGLNYAPRPAVYDVLSVDADARTVQLRAADGRTGTVYVAEEVFDVSTLKAGDKIRVDFVVPDASNKSLRAASVWLEK
Ga0256804_1008313Ga0256804_10083131F094847MQKDFTVIFSSSDKKAARDGILFPLTAMDSAYGTGPIKYVTIDLLEKLGYLAPNAFGGLSISPQVSQLFSAALEIFEKSEQTEKGDYPYVGDVESPTGTHTVWISPNSTRGKHTLYLPKD
Ga0256804_1009019Ga0256804_10090191F060457MYKDNAEPHNSSSDLGIFLSTIFHIASIACVPFLVNGTVNGNMYACGLLIVWTIYYSMRLAKSRKLLGLAFFVMILSAVVFGIYNFGLMSHYKNAKIYLEEEEIFCRETTYETLLSKYETEKSMISANFRICLDKAHVQPETCIKEVNHGTSLNEVMLS
Ga0256804_1010775Ga0256804_10107752F094061MGESENDVEVGGGEEFGLAFFKPSLSGDVLTLGAVSIAAGVIEDTLCAAVGAALDVATQGGGAAVKEVGDDPVLIWG
Ga0256804_1011018Ga0256804_10110182F034869STGGQGQRAAAVEAGTTMGSSFNRYYTLQLKRKGFRDLAKLERPDYPFPPSIFVAKKDALQTKRRAFKSLLTAMMEASGRQKSSKELSLQLIRKNLRIQNAEVVEAAYEDGVTLSFPYFTERQFKISLELLEKSMDQSVQLAYRQVIDHSILDEINRAGTNRP
Ga0256804_1011508Ga0256804_10115081F040358HLDVFTSQSDDKRSLANINLYGSNTMRVAIFALAVLAGGGAAEAGQIEVLSASPRHIEIAASCWTAGSNCQQEASDFAQGYCHGGNYPRRALYVRSGLVERSFFSERVIFVYRCNQQSIICEAGTC
Ga0256804_1012873Ga0256804_10128732F057478MQWIRSLVFTTLLFIGTLAFGVAVLVSALLPLSIEQRYVVPRSWGLLLTWLAKVI
Ga0256804_1012924Ga0256804_10129241F062963VPVLRTVKNMIKNKNGTQPFRGSLPIQLVKTDNANIGFKIIEAEIKLEGENVVITNANLNQAKIDINQKAFSALQSAIDPAKLKAVLPNEFQKLNMTVVSTRFRSYGGHAIAEINLAAASPLNIQ
Ga0256804_1013584Ga0256804_10135841F020378MKKYLIASALIVSFAAPAFAEQFYVVFDPASHKCEAMHSIPSGMKSMGTYASMRKAKQAMKGMKECGAA
Ga0256804_1013588Ga0256804_10135882F031548ATLMVFIGSGVSMADGWKNESGKRGYVYGHYKKTEYRHYQHYAPPRPVYVEHHYRPVVVERHVYHPPVVYQAPAPSGYFFGMSVMEPGMAFSFGVSGH
Ga0256804_1014705Ga0256804_10147052F003059MVRTGHVIGVVGVVATAIAGTPVSAQVTDAVYRGTMVCDKLPFSAGKSREAIEVTVAAGAVRYTQVVRLHDAAVASPEQGTGTLSGDAISLQGSWKGGNRQYEAKYSGTFVRRHADLKGTQTWTDGGKTMTRSCTGVIKRPFKVFLPRDKK
Ga0256804_1016723Ga0256804_10167231F098592MDFGSIRRCVAGIVLALAAVGLGLPPVDAAEKESKPLAARVTTIDFNECEPYQVRGQIMDLHPGHGTIIVAEREIRALDVGSGGKPIRTEFLTTDGKPESPSAFKIGQYVWVKGVLHPDGFVAAFVVQKITK
Ga0256804_1017819Ga0256804_10178192F048543MANEKDINPDDMQDFKDSIFRNLALLTLPWLSFQQDMLAIMKKGIEDTSHIKPVQKLTLLELHALMMILDPSRTWRSPFDAGFEKRVEDAYKEAFPRLVSGSIDFIEAQEMILKRMSDALITLKNSNKAKNHSNENSR
Ga0256804_1018695Ga0256804_10186951F000445RTRVALPDVLGVLEASGYGVLQLPPPGEHGLLLAVIADQIAEYSHHGYAVVAIGVRGEPGDGLHWRRLVPLLRYRGVALPPRHLIRPNIDAAAEGQRFAVFLSGYDLPVEEQRRWRV
Ga0256804_1019151Ga0256804_10191511F060311MKGPLTGPFFMFADFVVQARSIGYITRMVSKAQRIVLVDHARLPWRFFGRLTAVQAGL
Ga0256804_1020450Ga0256804_10204501F054979MKAMLEAAARQFGVPGEVLDVIDRKWISQVIDEFPSLLLPPIMQTLHREYVKNGLEWIRQNVASLRTQCLLLQKLYGPTWILA
Ga0256804_1023747Ga0256804_10237471F060457DPRTSSSDIGIFLSTIFHIASIACVPFLVNGTVNGNIYTCGLLLVWIIYYSFRLAKSRKLLGLAFFGMALSAVVLGIYNFGLMSQYKNAKRYLGEERTFCQEATYETLLSKYETEKSMISASFRLCLDKEHALPENCIKEVNHATSLNEVMLGNRLLRLSNCANSLTTRQKSVDRLKNNPWVKFWLNFP
Ga0256804_1025148Ga0256804_10251481F056714SVFLLVILILAGPLASFAATLQNTDSQEYELQIQESGRFYGSQYRIVENAKVEICFYGCVMTLVRTGQTVRVNTNDLVVIDEGVMNVHPAVNERGGW
Ga0256804_1025212Ga0256804_10252122F080803RAEEARQAMKEAEAKLKQARSPATPAQPEATEPGVKEPVPA
Ga0256804_1025322Ga0256804_10253221F032705RGEGSVVATLRNMSQMFGNLSRTVSGVDADKRTLYDRYKELTAEARKVAAETEAADVSESDKIRRNNLAFSRILGEINEVLTRMAEASTASYVRVVNQNLGSLTTTTRPGDTNEQKEAIERLSGLKDAAVKVVGQISGGRSAEEDRTVQAFTMIPAARAVWVYKGDVFYAWAGAIALDLIPTIFVILLTLGRPREE
Ga0256804_1025607Ga0256804_10256071F071793MEKRNSNRHKTDQSIVCTFFTSHSCAGTFDGRMQNYCDSGMYAELQSRFKEGTVLLARTTSSDPKESPSKIEEGFRSISLVEVKWSKPLSANGGFWYGTGLKYLTV
Ga0256804_1026203Ga0256804_10262031F076225MKTGRLLKFHRPDGDVHAYFYADADAVRAVLYRMAPGEERGPVHEIRGATSEEVERQVRAWIDSRYPRSS
Ga0256804_1027059Ga0256804_10270591F086926MKIEKIDTQKLEMPYTKPLVTATNNFTVARGLLVTVVTNRGVEGYGYADLFPRSGETAET
Ga0256804_1029552Ga0256804_10295521F052804NRQDAIDNGAVALSSQADVFLRGRLSRPVETETIRTYASKSASREAFEKLCTVEKAKAAVAAEGANVMAVWGTPVECIDKIKFYVDAMHPEQLMLNIASGSLAQDKVLASMRLFSQAVMPALRGR
Ga0256804_1030985Ga0256804_10309851F010544MHEFLRNTLNRQKLQQLFINTALGNFAGYVAGSLVTGVATYHSVERRALKNLFGVLPRHKVVVHVLPEWLEWALSVFVGFLVMELVRYVINRKKYLLLINGAARDEP
Ga0256804_1033341Ga0256804_10333412F015034LKMDSQGAADTYDAFQATLNPTGIPNRAGIDNLVRSLQTQGRFTDRKVAFGEVADDRPATEVAKELGYKLP
Ga0256804_1033540Ga0256804_10335401F032451MMRTDDGRIDHLQRGVGHAASGERFQHHVPDAAVGPPPKLPKDRVPVAEFLRQVAPRRPRSHHPKHGVEQAAMVPWGPPATMDQERLEIRPLIVGYLSANQGCSPQRVAL
Ga0256804_1034030Ga0256804_10340302F067864EYEPNHFKVVGLAGVVLLSGEIERAHRMASRALEDLDGILFVVEEPADSIVVRGSTGTTEFVRTPTICAEIMASSKDAFDRAMAALEEAFPGERVAGKILSEGRP
Ga0256804_1039011Ga0256804_10390111F055103MLTEQTNLASGLRGFWPVLAGHLGHARLVDRIFYWLRRSSPTWLAHNDPEIRVLMKYPG
Ga0256804_1040962Ga0256804_10409622F070240TSSPTPTVDDPWRWTVAVKDAKGKPLVGKVRLQILLGTLVVGCWKGTAMTQCSGATSGTWIAFKGLRTGVLTWPAQSVGVKLTFQAVVAAGGTILRLRAPVTVQPKT

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