Metagenome / Metatranscriptome Family F055103

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055103
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	60 residues
Representative Sequence	MIAAQDTLASGLRGFWPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Number of Associated Samples	83
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.91 %
% of genes near scaffold ends (potentially truncated)	30.22 %
% of genes from short scaffolds (< 2000 bps)	69.78 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.468 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment (32.374 % of family members)
Environment Ontology (ENVO)	Unclassified (33.094 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline) (33.813 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.92% β-sheet: 0.00% Coil/Unstructured: 39.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF00005	ABC_tran	2.88
PF03401	TctC	2.16
PF13006	Nterm_IS4	1.44
PF13751	DDE_Tnp_1_6	1.44
PF02801	Ketoacyl-synt_C	1.44
PF00106	adh_short	1.44
PF10017	Methyltransf_33	1.44
PF13649	Methyltransf_25	1.44
PF08450	SGL	1.44
PF05239	PRC	1.44
PF13545	HTH_Crp_2	1.44
PF00501	AMP-binding	1.44
PF08240	ADH_N	0.72
PF02746	MR_MLE_N	0.72
PF05187	ETF_QO	0.72
PF13242	Hydrolase_like	0.72
PF07298	NnrU	0.72
PF04290	DctQ	0.72
PF04972	BON	0.72
PF12627	PolyA_pol_RNAbd	0.72
PF01774	UreD	0.72
PF00206	Lyase_1	0.72
PF02211	NHase_beta	0.72
PF00072	Response_reg	0.72
PF00924	MS_channel	0.72
PF00089	Trypsin	0.72
PF12697	Abhydrolase_6	0.72
PF05231	MASE1	0.72
PF12391	PCDO_beta_N	0.72
PF13442	Cytochrome_CBB3	0.72
PF13433	Peripla_BP_5	0.72
PF06463	Mob_synth_C	0.72
PF01434	Peptidase_M41	0.72
PF10590	PNP_phzG_C	0.72
PF00793	DAHP_synth_1	0.72
PF16811	TAtT	0.72
PF04226	Transgly_assoc	0.72
PF00589	Phage_integrase	0.72
PF16360	GTP-bdg_M	0.72
PF01312	Bac_export_2	0.72
PF08085	Entericidin	0.72
PF11964	SpoIIAA-like	0.72
PF00482	T2SSF	0.72
PF01584	CheW	0.72
PF03466	LysR_substrate	0.72
PF13624	SurA_N_3	0.72
PF02321	OEP	0.72
PF01678	DAP_epimerase	0.72
PF03331	LpxC	0.72
PF02272	DHHA1	0.72
PF02979	NHase_alpha	0.72
PF02668	TauD	0.72
PF01471	PG_binding_1	0.72
PF00211	Guanylate_cyc	0.72
PF01053	Cys_Met_Meta_PP	0.72
PF02646	RmuC	0.72
PF02771	Acyl-CoA_dh_N	0.72
PF13298	LigD_N	0.72
PF13602	ADH_zinc_N_2	0.72
PF05368	NmrA	0.72
PF00873	ACR_tran	0.72
PF00582	Usp	0.72
PF01370	Epimerase	0.72
PF02535	Zip	0.72
PF12773	DZR	0.72
PF01479	S4	0.72
PF01957	NfeD	0.72
PF00378	ECH_1	0.72
PF04347	FliO	0.72
PF02900	LigB	0.72
PF01641	SelR	0.72
PF13738	Pyr_redox_3	0.72
PF13378	MR_MLE_C	0.72
PF13366	PDDEXK_3	0.72
PF00441	Acyl-CoA_dh_1	0.72
PF09339	HTH_IclR	0.72
PF01245	Ribosomal_L19	0.72
PF03704	BTAD	0.72
PF04546	Sigma70_ner	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.16
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.44
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.44
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.44
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	1.44
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	1.44
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.72
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.72
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.72
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.72
COG2440	Ferredoxin-like protein FixX	Energy production and conversion [C]	0.72
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.72
COG2896	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	Coenzyme transport and metabolism [H]	0.72
COG3190	Flagellar biogenesis protein FliO	Cell motility [N]	0.72
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.72
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.72
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.72
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.72
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.72
COG4094	Uncharacterized membrane protein	Function unknown [S]	0.72
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.72
COG5510	Predicted small secreted protein	Function unknown [S]	0.72
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.72
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.72
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG0253	Diaminopimelate epimerase	Amino acid transport and metabolism [E]	0.72
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	0.72
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.72
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	0.72
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.72
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.72
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.72
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.72
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.72
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.72
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.72
COG0774	UDP-3-O-acyl-N-acetylglucosamine deacetylase	Cell wall/membrane/envelope biogenesis [M]	0.72
COG0829	Urease accessory protein UreH	Posttranslational modification, protein turnover, chaperones [O]	0.72
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.72
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.72
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.47 %
Unclassified	root	N/A	34.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.47 %
Unclassified	root	N/A	34.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.47 %
Unclassified	root	N/A	34.53 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.48 %
Unclassified	root	N/A	34.53 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.53 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	17.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.76 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.44 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	1.44 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.72 %
Hydrogenophilalia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia	0.72 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.72 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.88 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples	2.16 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.44 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.44 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.72 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.72 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.72 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.72 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.72 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	0.72 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.72 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.72 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.53 %
uncultured beta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	2.16 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.44 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.72 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.72 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.72 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.72 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.72 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.72 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.72 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.72 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.72 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.72 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.53 %
uncultured beta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	2.16 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.44 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.72 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.72 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.72 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.72 %
unclassified Caulobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae	0.72 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.72 %
unclassified Ectothiorhodospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae	0.72 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.72 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.72 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.72 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.53 %
uncultured beta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	2.16 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.44 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	0.72 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	0.72 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.72 %
Ectothiorhodospiraceae bacterium WFHF3C12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium WFHF3C12	0.72 %
Caulobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	0.72 %
unclassified Sphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium	0.72 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.72 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.72 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.72 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.72 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.53 %
uncultured beta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	2.16 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.44 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	0.72 %
Sphingobium sp. S8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. S8	0.72 %
Desulfobacteraceae bacterium 4484_190.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.1	0.72 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.72 %
Ectothiorhodospiraceae bacterium WFHF3C12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium WFHF3C12	0.72 %
Caulobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	0.72 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.72 %
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	0.72 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.72 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.72 %
Hydrogenophilales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004049\|Ga0055493_10104070	Not Available	610	Open in IMG/M
3300005213\|Ga0068998_10146412	Not Available	562	Open in IMG/M
3300005356\|Ga0070674_101706979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13	569	Open in IMG/M
3300005828\|Ga0074475_10510899	Not Available	601	Open in IMG/M
3300005829\|Ga0074479_10504832	Not Available	645	Open in IMG/M
3300005836\|Ga0074470_10087975	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300005836\|Ga0074470_10186466	All Organisms → cellular organisms → Bacteria → Proteobacteria	3765	Open in IMG/M
3300005836\|Ga0074470_10552472	Not Available	1168	Open in IMG/M
3300005836\|Ga0074470_10875744	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300005836\|Ga0074470_11103300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	572	Open in IMG/M
3300005836\|Ga0074470_11339875	All Organisms → cellular organisms → Bacteria → Proteobacteria	1637	Open in IMG/M
3300005836\|Ga0074470_11417794	Not Available	1997	Open in IMG/M
3300005836\|Ga0074470_11710057	Not Available	957	Open in IMG/M
3300006174\|Ga0075014_100077542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1500	Open in IMG/M
3300006606\|Ga0074062_12950358	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300006845\|Ga0075421_100814671	Not Available	1074	Open in IMG/M
3300006847\|Ga0075431_100809506	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	910	Open in IMG/M
3300006865\|Ga0073934_10712025	Not Available	578	Open in IMG/M
3300006865\|Ga0073934_10717846	Not Available	575	Open in IMG/M
3300009009\|Ga0105105_10745834	Not Available	586	Open in IMG/M
3300009037\|Ga0105093_10086085	Not Available	1492	Open in IMG/M
3300009053\|Ga0105095_10000038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	43311	Open in IMG/M
3300009053\|Ga0105095_10000114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	31605	Open in IMG/M
3300009053\|Ga0105095_10000572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	17969	Open in IMG/M
3300009053\|Ga0105095_10004359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7701	Open in IMG/M
3300009053\|Ga0105095_10005547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6854	Open in IMG/M
3300009053\|Ga0105095_10006079	All Organisms → cellular organisms → Bacteria → Proteobacteria	6546	Open in IMG/M
3300009053\|Ga0105095_10207038	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300009078\|Ga0105106_10000491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	27700	Open in IMG/M
3300009078\|Ga0105106_10006117	All Organisms → cellular organisms → Bacteria	8660	Open in IMG/M
3300009078\|Ga0105106_10132142	All Organisms → cellular organisms → Bacteria	1836	Open in IMG/M
3300009078\|Ga0105106_10324731	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300009078\|Ga0105106_10635687	All Organisms → cellular organisms → Bacteria → Proteobacteria	764	Open in IMG/M
3300009080\|Ga0102815_10873470	Not Available	514	Open in IMG/M
3300009087\|Ga0105107_10000259	All Organisms → cellular organisms → Bacteria → Proteobacteria	31815	Open in IMG/M
3300009087\|Ga0105107_10000309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	29773	Open in IMG/M
3300009091\|Ga0102851_11687054	Not Available	711	Open in IMG/M
3300009100\|Ga0075418_11729867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300009111\|Ga0115026_11040400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. S8	657	Open in IMG/M
3300009146\|Ga0105091_10612950	Not Available	563	Open in IMG/M
3300009146\|Ga0105091_10630072	Not Available	556	Open in IMG/M
3300009146\|Ga0105091_10703827	Not Available	530	Open in IMG/M
3300009146\|Ga0105091_10768032	Not Available	510	Open in IMG/M
3300009153\|Ga0105094_10000070	All Organisms → cellular organisms → Bacteria → Proteobacteria	38637	Open in IMG/M
3300009153\|Ga0105094_10000729	All Organisms → cellular organisms → Bacteria → Proteobacteria	16674	Open in IMG/M
3300009157\|Ga0105092_10725233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	579	Open in IMG/M
3300009167\|Ga0113563_11442314	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300009167\|Ga0113563_12328822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	644	Open in IMG/M
3300009171\|Ga0105101_10001610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	9919	Open in IMG/M
3300009171\|Ga0105101_10006397	All Organisms → cellular organisms → Bacteria → Proteobacteria	5482	Open in IMG/M
3300009171\|Ga0105101_10029827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2646	Open in IMG/M
3300009171\|Ga0105101_10105195	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300009610\|Ga0105340_1152651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Hydrogenophilalia → Hydrogenophilales	953	Open in IMG/M
3300009796\|Ga0105086_109989	Not Available	608	Open in IMG/M
3300009796\|Ga0105086_119223	Not Available	523	Open in IMG/M
3300010047\|Ga0126382_11851502	All Organisms → cellular organisms → Bacteria → Proteobacteria	569	Open in IMG/M
3300011407\|Ga0137450_1088475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	599	Open in IMG/M
3300011408\|Ga0137460_1117841	Not Available	528	Open in IMG/M
3300011443\|Ga0137457_1293228	Not Available	555	Open in IMG/M
3300012505\|Ga0157339_1030730	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300014256\|Ga0075318_1004871	All Organisms → cellular organisms → Bacteria → Proteobacteria	1639	Open in IMG/M
3300014264\|Ga0075308_1056387	Not Available	776	Open in IMG/M
3300014269\|Ga0075302_1144943	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300014300\|Ga0075321_1119145	Not Available	552	Open in IMG/M
3300014308\|Ga0075354_1122378	Not Available	567	Open in IMG/M
3300014315\|Ga0075350_1096228	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300014317\|Ga0075343_1184758	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300014321\|Ga0075353_1160992	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4484_190.1	574	Open in IMG/M
3300015371\|Ga0132258_10217830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	4643	Open in IMG/M
3300015371\|Ga0132258_10249233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4341	Open in IMG/M
3300015371\|Ga0132258_13104195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1148	Open in IMG/M
3300015373\|Ga0132257_102404938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	684	Open in IMG/M
3300017944\|Ga0187786_10413522	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300018064\|Ga0187773_11119311	Not Available	524	Open in IMG/M
3300018469\|Ga0190270_12223563	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300020063\|Ga0180118_1118256	Not Available	558	Open in IMG/M
3300020064\|Ga0180107_1143473	Not Available	522	Open in IMG/M
3300021332\|Ga0210339_1281866	Not Available	975	Open in IMG/M
3300022389\|Ga0210318_1097427	Not Available	599	Open in IMG/M
3300025555\|Ga0210121_1079142	Not Available	552	Open in IMG/M
3300025580\|Ga0210138_1115416	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300025948\|Ga0210088_1055064	Not Available	629	Open in IMG/M
3300026349\|Ga0256811_1034760	Not Available	550	Open in IMG/M
3300026372\|Ga0256804_1039011	Not Available	509	Open in IMG/M
3300027027\|Ga0209844_1022522	Not Available	504	Open in IMG/M
3300027695\|Ga0209966_1173263	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300027713\|Ga0209286_1000135	All Organisms → cellular organisms → Bacteria	16425	Open in IMG/M
3300027713\|Ga0209286_1000290	Not Available	13131	Open in IMG/M
3300027713\|Ga0209286_1000591	All Organisms → cellular organisms → Bacteria	10255	Open in IMG/M
3300027713\|Ga0209286_1001199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	7987	Open in IMG/M
3300027713\|Ga0209286_1004501	All Organisms → cellular organisms → Bacteria → Proteobacteria	4713	Open in IMG/M
3300027713\|Ga0209286_1005421	All Organisms → cellular organisms → Bacteria → Proteobacteria	4365	Open in IMG/M
3300027723\|Ga0209703_1001512	All Organisms → cellular organisms → Bacteria → Proteobacteria	7369	Open in IMG/M
3300027723\|Ga0209703_1005957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4213	Open in IMG/M
3300027723\|Ga0209703_1030170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	2089	Open in IMG/M
3300027723\|Ga0209703_1194326	Not Available	748	Open in IMG/M
3300027731\|Ga0209592_1000060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	25291	Open in IMG/M
3300027731\|Ga0209592_1000360	All Organisms → cellular organisms → Bacteria → Proteobacteria	13513	Open in IMG/M
3300027731\|Ga0209592_1001072	All Organisms → cellular organisms → Bacteria → Proteobacteria	8833	Open in IMG/M
3300027731\|Ga0209592_1002319	All Organisms → cellular organisms → Bacteria → Proteobacteria	6560	Open in IMG/M
(restricted) 3300027799\|Ga0233416_10020675	Not Available	2175	Open in IMG/M
3300027818\|Ga0209706_10006861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5944	Open in IMG/M
3300027935\|Ga0209870_108681	Not Available	531	Open in IMG/M
3300027979\|Ga0209705_10000205	All Organisms → cellular organisms → Bacteria → Proteobacteria	31119	Open in IMG/M
3300027979\|Ga0209705_10000237	All Organisms → cellular organisms → Bacteria → Proteobacteria	28456	Open in IMG/M
3300027979\|Ga0209705_10429085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	654	Open in IMG/M
3300028420\|Ga0210366_10131351	Not Available	904	Open in IMG/M
3300030620\|Ga0302046_10144553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	1951	Open in IMG/M
3300030620\|Ga0302046_10658199	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300032075\|Ga0310890_10853602	Not Available	724	Open in IMG/M
3300032144\|Ga0315910_10539500	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	902	Open in IMG/M
3300032144\|Ga0315910_11124813	Not Available	613	Open in IMG/M
3300032770\|Ga0335085_11009215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	899	Open in IMG/M
3300032828\|Ga0335080_10721574	All Organisms → cellular organisms → Bacteria → Proteobacteria	1037	Open in IMG/M
3300032829\|Ga0335070_10804434	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	874	Open in IMG/M
3300032829\|Ga0335070_11826551	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300032893\|Ga0335069_11727299	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300032954\|Ga0335083_10628757	All Organisms → cellular organisms → Bacteria → Proteobacteria	881	Open in IMG/M
3300032955\|Ga0335076_10219704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1800	Open in IMG/M
3300032955\|Ga0335076_10455467	All Organisms → cellular organisms → Bacteria → Proteobacteria	1163	Open in IMG/M
3300032955\|Ga0335076_11038585	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300032955\|Ga0335076_11268179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium WFHF3C12	621	Open in IMG/M
3300033004\|Ga0335084_10056084	All Organisms → cellular organisms → Bacteria → Proteobacteria	4067	Open in IMG/M
3300033004\|Ga0335084_10066054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3741	Open in IMG/M
3300033004\|Ga0335084_10125385	All Organisms → cellular organisms → Bacteria	2669	Open in IMG/M
3300033004\|Ga0335084_10152875	All Organisms → cellular organisms → Bacteria → Proteobacteria	2400	Open in IMG/M
3300033004\|Ga0335084_10429623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	1359	Open in IMG/M
3300033004\|Ga0335084_10857143	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300033004\|Ga0335084_11889506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	583	Open in IMG/M
3300033158\|Ga0335077_10375712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1534	Open in IMG/M
3300033408\|Ga0316605_10830793	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300033413\|Ga0316603_12345414	Not Available	503	Open in IMG/M
3300033418\|Ga0316625_101752571	Not Available	600	Open in IMG/M
3300033482\|Ga0316627_100768480	Not Available	906	Open in IMG/M
3300033485\|Ga0316626_11930356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300034692\|Ga0373917_0013917	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.37%
Host-Associated	Host-Associated	7.91%
Engineered	Engineered	0.72%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	57.55%
Terrestrial	Environmental → Terrestrial	33.81%
Plants	Host-Associated → Plants	7.91%
Bioremediation	Engineered → Bioremediation	0.72%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	38.85%
Soil	Environmental → Terrestrial → Soil	33.81%
Sediment	Environmental → Aquatic → Sediment	10.79%
Marine	Environmental → Aquatic → Marine	6.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.44%
Metal	Engineered → Bioremediation → Metal	0.72%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Sediment	34.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	5.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.60%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.60%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.88%
Sand	Environmental → Terrestrial → Soil → Sand	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.16%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.44%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.44%
Lake	Environmental → Aquatic → Freshwater → Lake	0.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.72%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	34.53%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	25.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.04%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.60%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.16%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.44%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.44%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.72%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	32.37%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	16.55%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	7.19%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	5.76%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.60%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.88%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.88%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.16%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.16%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.44%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	1.44%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.44%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.72%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004049	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005828	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBI	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009796	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_0_10	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300011407	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2	Environmental	Open in IMG/M
3300011408	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT723_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300014256	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D2	Environmental	Open in IMG/M
3300014264	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2_rd	Environmental	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014300	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D1	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014315	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1	Environmental	Open in IMG/M
3300014317	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020064	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021332	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.384 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022389	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.24 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025555	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025948	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026349	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU6	Environmental	Open in IMG/M
3300026372	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F5	Environmental	Open in IMG/M
3300027027	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027723	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027799 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027935	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028420	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.641 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300034692	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055493_101040701	3300004049	Natural And Restored Wetlands	MFAARTTLASGLRGFWPVLDGHLGHARLADRMFYRLRRSSPTWLAQNDPEFRVLMKYPG*
Ga0068998_101464121	3300005213	Natural And Restored Wetlands	MRAERTTLTSGLRGFWPVLGGQLGHARLANRMIYWLRRSSPTWLAQNDPENEGAKILLSRRVSSLRPFRVLMKYPG*
Ga0070674_1017069792	3300005356	Miscanthus Rhizosphere	VDLGLRGFWRVLAGHIGHARLANRMIYWLRRSSPICLAQSSAKFRVLTKYPG*
Ga0074475_105108992	3300005828	Sediment (Intertidal)	MIAEQDTLALGLRGLRPVLDGHLGHARLANRMIYWPRRSSPTWLAQNNPQIRVLMKYPG*
Ga0074479_105048322	3300005829	Sediment (Intertidal)	MLAERTTLASGLRGFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPENEGAKILLSRRVSSLRPFRVLMKYPG*
Ga0074470_100879751	3300005836	Sediment (Intertidal)	LPAQDTLASGLRGFWPVLDGHLEHARLANRIIYWLRRSSPIWLAQNDPEIRVLMKYPG*
Ga0074470_101864661	3300005836	Sediment (Intertidal)	MSAAQDTLASGLRGFWPVLDGHLGHARLANRMIYWLQRSSPTWLAQNDPEIRVLMKYPG*
Ga0074470_105524725	3300005836	Sediment (Intertidal)	MLAAQGTLASGLRGFWLVLNGHLGPARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG*
Ga0074470_108757443	3300005836	Sediment (Intertidal)	MLAAPDTLASGLRGFWLVLDGHLGHARLANRTIYWLRRSSPTWLAQNDPEIRVLMKYPG*
Ga0074470_111033002	3300005836	Sediment (Intertidal)	MLPAQDTLASGLRGFWLVLDGHLGPARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG*
Ga0074470_113398751	3300005836	Sediment (Intertidal)	MIAAQDTLASGFRGFWPVLDGHLWHARLANRMIYWLQRSSPTRLAQNDPEIRVLMKYPG*
Ga0074470_114177941	3300005836	Sediment (Intertidal)	TLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPSWLAQNDPEIRVLMKYPG*
Ga0074470_117100572	3300005836	Sediment (Intertidal)	VVQDTLVSGLRGFWLVLDGHLGHARLANRMIYWLRRSSPPWLAQNDPEIRGLMKYPG*
Ga0075014_1000775423	3300006174	Watersheds	LDLGLRGFWRVLAGHIGHARLANRMIYWRRRSSPICLAQSSAKFRVLMKYPG*
Ga0074062_129503581	3300006606	Soil	MRATQHTLASGLRGFWAVVDGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVPMKYPG*
Ga0075421_1008146712	3300006845	Populus Rhizosphere	MLTTRYTLASGLRGFRPVVNGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVLMKYPG*
Ga0075431_1008095062	3300006847	Populus Rhizosphere	MVTTRYTLASGLRGFRPVVNGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVLMKYPG*
Ga0073934_107120251	3300006865	Hot Spring Sediment	MVALQTTLASGLRGFWLVLAGHLGHARLADRMIYRLRRSSPTWLAQNDPQIRVLM
Ga0073934_107178462	3300006865	Hot Spring Sediment	MIAAQDTLASGLRGFWLVLDGHLGHARLANRMFYWPCRSSPTWLAQNEP*
Ga0105105_107458342	3300009009	Freshwater Sediment	MIAGQDTLALGLRGFWLVLDGQLGHARLANRMIYWLRRSRPTWLAQNDPEIRVLMKYPG*
Ga0105093_100860852	3300009037	Freshwater Sediment	MIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWLRRSSPTWLARNDPEIRVLMKYPG*
Ga0105095_1000003839	3300009053	Freshwater Sediment	MIAAQDTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLARNDPEIRVLMKYPG*
Ga0105095_100001141	3300009053	Freshwater Sediment	MIAGQDTLASGLRGFRPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKY
Ga0105095_1000057215	3300009053	Freshwater Sediment	MIAAQDTLASGLRGFWVVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVPMKYPG*
Ga0105095_100043591	3300009053	Freshwater Sediment	MIAARHTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYP
Ga0105095_100055472	3300009053	Freshwater Sediment	MIAGQDTLALGLRGFWLVLDSHLGHARLTNRMIYWLRRSSPTWLAQNDPEIRVLMKYPG*
Ga0105095_100060791	3300009053	Freshwater Sediment	ALGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPIIRVLMKYPG*
Ga0105095_102070381	3300009053	Freshwater Sediment	MHTSKRFRFEMIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWRRRSSPTWLAQNDPEIRVLMK
Ga0105106_1000049123	3300009078	Freshwater Sediment	MIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG*
Ga0105106_100061175	3300009078	Freshwater Sediment	MIAAQDTLAPGLRGFWLVLDGHLGHARVANRMIYWLRRSSPTWLARNDPEIRVLMKYPG*
Ga0105106_101321422	3300009078	Freshwater Sediment	DTLASGLRGFRPVLDGHLGHARLANRMIYWLRRSSPTWLARNDPEIRVLMKYPG*
Ga0105106_103247311	3300009078	Freshwater Sediment	MHTSKRFRFEMIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWRRRSSPTWLAQNDPEIRVLMKYPG*
Ga0105106_106356872	3300009078	Freshwater Sediment	MIAARDTLASGLRGLWLVLNGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG*
Ga0102815_108734701	3300009080	Estuarine	MFAEQTNLDSGLRGFWLVLDGHLGHARLANRMFYWLRRSSPRWLAQNDPENEGAKILLSRRVSSLRPFRVLMKYPG*
Ga0105107_100002591	3300009087	Freshwater Sediment	DTLALGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPIIRVLMKYPG*
Ga0105107_1000030930	3300009087	Freshwater Sediment	MIAGQDTLASGLRGFRPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYP
Ga0102851_116870542	3300009091	Freshwater Wetlands	MPSVPTTLASGLRGLWPVLAGHLGHARLADRTLYRLRRSSPTWLAQNDPQIRVLMKYPG*
Ga0075418_117298672	3300009100	Populus Rhizosphere	MLVERTILASGLRGFWPVLDGHLGHARLANRMFYWLRRLSPTWLAHDDPEFRVLMKYPG*
Ga0115026_110404001	3300009111	Wetland	PNRERWLAGTIWTSGLRGLWCVLAGHLGHARLANRMIYWLRRSSPTWHAQNAPEIRVLMKYPG*
Ga0105091_106129501	3300009146	Freshwater Sediment	MFAEQTNLDSGLRGFWPVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYPG*
Ga0105091_106300721	3300009146	Freshwater Sediment	TPVNDLRMPAKRTTLASGLRGFWPVLDGHLGHARLANRTFYWLRRSSPTWLAQNDPEFRVLMKYPG*
Ga0105091_107038272	3300009146	Freshwater Sediment	MFAERTTLPSGLRGFWPVLDGHLEHARLANRMFYWLRRSSPTWLAQNDPEFRILMKYPG*
Ga0105091_107680322	3300009146	Freshwater Sediment	AEQTNLDSGLRGFWLVLAGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKHPG*
Ga0105094_100000708	3300009153	Freshwater Sediment	MIAGQDTLALGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPIIRVLMKYPG*
Ga0105094_100007291	3300009153	Freshwater Sediment	TPYCLQMHTSKRFRFEMIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWRRRSSPTWLAPNDPEIRVLMKYPG*
Ga0105092_107252331	3300009157	Freshwater Sediment	MFAERTTLDSRLRGFWPVLDGHLGHARLADRMFYRLRRSSPTWLAQNDPEIPVLMKYPG*
Ga0113563_114423142	3300009167	Freshwater Wetlands	MPSVPTTLASGLRGLWPVLAGHLGHARLADRTLYRLRRSSPTWLAQNDPQIRVLMKHPD*
Ga0113563_123288221	3300009167	Freshwater Wetlands	MFAEQTTLDSGLRGFWLVLDGHLGHARLANRMFYWLRRSSPSWLAQNDPENEGAKILLSRRDASLRPIRVLMKYPG*
Ga0105101_100016101	3300009171	Freshwater Sediment	MIAAQDTLAPGLRGFWVVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVPMKYPG
Ga0105101_100063975	3300009171	Freshwater Sediment	MIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWLRRSSPTWLARNDPEIRVLM
Ga0105101_100298274	3300009171	Freshwater Sediment	MIAAQDTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLARHDPEIRVLMKYPG*
Ga0105101_101051952	3300009171	Freshwater Sediment	MIAGQDTLALGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKY
Ga0105340_11526512	3300009610	Soil	MLAAQDTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPIWLAQNDPEFRVPMKYPG*
Ga0105086_1099891	3300009796	Groundwater Sand	MLAGRTTLASGLRGFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPENEGAKILLSRRVSSLRPFRVLMKYPG*
Ga0105086_1192232	3300009796	Groundwater Sand	MLAAQDTLASGLRGFWLVVDGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVLMKYPG*
Ga0126382_118515021	3300010047	Tropical Forest Soil	MFAQQTNLALGLRGFWLVLAGHLRHARLANRMIYWLRRSSLTWLAQNDPELRVL
Ga0137450_10884752	3300011407	Soil	MFAEQTNLDSGLRGFWLVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYPG*
Ga0137460_11178412	3300011408	Soil	MFAEQTNLDSGLRGFWLVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPELRVPMKYPG*
Ga0137457_12932281	3300011443	Soil	MFAEQTNLHSGLRGFWPVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYPG*
Ga0157339_10307301	3300012505	Arabidopsis Rhizosphere	MFAEQTNLASGLRGFWLVVDGHLGHARLANRMFYWLRRSSPTWLARNDPEFRVLMKYPA*
Ga0075318_10048711	3300014256	Natural And Restored Wetlands	EMIATQHTLASGLRGFWLVLDGHLGPPRLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0075308_10563871	3300014264	Natural And Restored Wetlands	MLPAQDTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPQIRVLMKYPG*
Ga0075302_11449431	3300014269	Natural And Restored Wetlands	MSAAQDTLASGLRGFWPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG*
Ga0075321_11191452	3300014300	Natural And Restored Wetlands	MIAAQDTLASGLRGFWPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG*
Ga0075354_11223782	3300014308	Natural And Restored Wetlands	MFAEQTNLDSGLRGSWLVLDGHLGHARLANRMFYWLRRSSPTWLARNDPEFRVLMKYPG*
Ga0075350_10962281	3300014315	Natural And Restored Wetlands	MLVNDLEMFAEQTNLDSGLRGFWPVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYSG*
Ga0075343_11847582	3300014317	Natural And Restored Wetlands	MLAERTTLASGLRGFWPVLAGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYPG*
Ga0075353_11609922	3300014321	Natural And Restored Wetlands	MTVAQANLASGLRGFWLVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPESRVLMKYPG*
Ga0132258_102178305	3300015371	Arabidopsis Rhizosphere	MFAQQTNLASGLRGFWPVLDGHLGHARLADRIFYRLRRSSPTWLAHNDPEIRVLMKYPG*
Ga0132258_102492335	3300015371	Arabidopsis Rhizosphere	MLTEQTNLDSRLRGFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG*
Ga0132258_107136031	3300015371	Arabidopsis Rhizosphere	MLTEQTNLASGLRGWPQARNSARKGYFRAIVFWLVVDGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVPMKYPG*
Ga0132258_131041951	3300015371	Arabidopsis Rhizosphere	MFAEQTNLASGLRGFWLVVDGHLGHARLANRMFYWLRRSSPTWLAHNE
Ga0132257_1024049382	3300015373	Arabidopsis Rhizosphere	MLAEQTNLASGLRGFWPVLDGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVPMKYPG*
Ga0187786_104135222	3300017944	Tropical Peatland	MLIDQTNLDSGLRGFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKDPA
Ga0187778_108971831	3300017961	Tropical Peatland	MLTEQTNLDLGLHGWPQARNSARKRYFRAIVFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0187780_114849661	3300017973	Tropical Peatland	MLTEQTNLDLGLHGWPQARNSARKRYFRAFVFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0187773_111193111	3300018064	Tropical Peatland	MLTEQTNLDSRLRGFWLVLAGHLGHARLANRTIYWLRRSSTTWLAQNDPEFHVLMKYPG
Ga0190270_122235632	3300018469	Soil	MFAEQTNLDSGPRGFWLVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPELRVLMKYPG
Ga0180118_11182561	3300020063	Groundwater Sediment	MFAEQTNLASGLRGFWPVPDGHLGHARLADRMIYRLRRSSPIWLAHNDPEIRVPMKYPG
Ga0180107_11434732	3300020064	Groundwater Sediment	LASGLRGFWPVLAGHLGHARLANRMIYWRRRSSLIWLVQNDQEFRVLMKYPG
Ga0210339_12818661	3300021332	Estuarine	MMAERHTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPELRVLMKYPG
Ga0210318_10974271	3300022389	Estuarine	MIAEQDTLALGLRGLRPVLDGHLGHARLANRMIYWPRRSSPTWLAQNNPQIRVLMKYPG
Ga0210121_10791422	3300025555	Natural And Restored Wetlands	MLPAQDTLALGLRGFWLVLDGHLGPARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0210138_11154162	3300025580	Natural And Restored Wetlands	MPDTQDTLASGLRGFWPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0210088_10550642	3300025948	Natural And Restored Wetlands	PPIATGCTPVNDLEMLAEQANLDSGLRGFWPVLAGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0256811_10347601	3300026349	Sediment	MLTEQTNLASGLRGFWLVVDGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVLMKYPG
Ga0256804_10390111	3300026372	Sediment	MLTEQTNLASGLRGFWPVLAGHLGHARLVDRIFYWLRRSSPTWLAHNDPEIRVLMKYPG
Ga0209844_10225222	3300027027	Groundwater Sand	MFAEQTNLDSGLRGFWLVLDGHLGQARLANRMFYWLRRSSPRWLAQNDPEFRVLMKYPG
Ga0209966_11732631	3300027695	Arabidopsis Thaliana Rhizosphere	AAGLRGFWPVLDGHLGHARLADRMIYWLRRSSPTWLAHNDPEIRVPMKYPGQCHGYGTPAGG
Ga0209286_100013512	3300027713	Freshwater Sediment	MIAAQDTLAPGLRGFWLVLDGHLGHARVANRMIYWLRRSSPTWLARNDPEIRVLMKYPG
Ga0209286_10002907	3300027713	Freshwater Sediment	MIAARHTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0209286_10005914	3300027713	Freshwater Sediment	MIAGQDTLALGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPIIRVLMKYPG
Ga0209286_10011993	3300027713	Freshwater Sediment	MIAAQDTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLARNDPEIRVLMKYPG
Ga0209286_10045013	3300027713	Freshwater Sediment	MIAGQDTLALGLRGFWLVLDSHLGHARLTNRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0209286_10054214	3300027713	Freshwater Sediment	MIAAQDTLASGLRGFRVVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVPMKYPG
Ga0209703_10015122	3300027723	Freshwater Sediment	MIAAQDTLASGLRGFWVVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVPMKYPG
Ga0209703_10059572	3300027723	Freshwater Sediment	MIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0209703_10301701	3300027723	Freshwater Sediment	MIAGQDTLASGLRGFRPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVL
Ga0209703_11943261	3300027723	Freshwater Sediment	QDTLASGLRGFRLVLDGHLGHARLANRMIYWLRRSSPTWLARNDPEIRVLMKYPG
Ga0209592_100006014	3300027731	Freshwater Sediment	MIAGQDTLASGLRGFRPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0209592_10003606	3300027731	Freshwater Sediment	MIAGQDTLALGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0209592_10010721	3300027731	Freshwater Sediment	MIAARHTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPE
Ga0209592_10023192	3300027731	Freshwater Sediment	MIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWLRRSSPTWLARNDPEIRVLMKYPG
(restricted) Ga0233416_100206752	3300027799	Sediment	MIVAQDTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG
Ga0209706_100068611	3300027818	Freshwater Sediment	LQMHTSKRFRFEMIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWRRRSSPTWLAQNDPEIRVLMKYPG
Ga0209870_1086811	3300027935	Groundwater Sand	MFAEQTNLDSGLRGFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0209705_100002056	3300027979	Freshwater Sediment	MHTSKRFRFEMIAAQDTLASGLRGFRLVLDGHLGHARLANRMIYWRRRSSPTWLAQNDPEIRVLMKYPG
Ga0209705_100002371	3300027979	Freshwater Sediment	MIAARHTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEI
Ga0209705_104290852	3300027979	Freshwater Sediment	MIAARDTLASGLRGLWLVLDGHLGHAHLANRMIYWLRRSSPTWLVQNDPEIRVLMKYPG
Ga0210366_101313512	3300028420	Estuarine	ACQYAPANAFAMMAAQDTLASGLRGFWPVLDGHLGHARLANRMVYWLRRSSPTWLAQNDPEFRVPMKYPG
Ga0302046_101445533	3300030620	Soil	MIAAQDTLASGLRGFWLVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIR
Ga0302046_106581992	3300030620	Soil	MIAAQDTLASGLRGFWLVLNGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLM
Ga0310890_108536021	3300032075	Soil	LDACHTLASGLRGFWPVLVGHLGHARLANRMIYWRRRSSPTWLAQNDPEIRVLMKYPG
Ga0315910_105395002	3300032144	Soil	MLAARNTSVSGLRGFRPVLGGHLGHARLANRLIYWLRRSSPTWLAQNDPEIRVLMKYPGLGC
Ga0315910_111248131	3300032144	Soil	MLHCSTNLASGLRGFWPVLGGHLGHARLVNRTLYWLRRSSPTWLAHNDPEIRVLMKYPGPGYFIRT
Ga0335085_110092152	3300032770	Soil	MRTEQTNLDSGLRGFWLVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0335080_107215742	3300032828	Soil	MRAEQTNLDSRLRGFWPVLAGHLGHARLANRMSYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0335070_108044342	3300032829	Soil	LRGFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0335070_118265512	3300032829	Soil	VFEMRTEQTNLDSGLRGFWLVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0335069_117272992	3300032893	Soil	MRTEQTNLDSGLRGFWPVLAGHLGHARLADRMIYWLRRSSPNWLAQNDPEFRVLMKYPG
Ga0335083_106287572	3300032954	Soil	MLTEQTDLDSGLRGFRPVPAGHLGHARLANRMIYWLRQSSRTWLARNDPEFRVLMKYPG
Ga0335076_102197042	3300032955	Soil	MLTEQTGLNSRLRGFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMQYPD
Ga0335076_104554672	3300032955	Soil	EMRAEQTNLDSRLRGFWPVLAGHLGHARLANRMSYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0335076_110385852	3300032955	Soil	MLAEQTNLDSGLRGFWSVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0335076_112681791	3300032955	Soil	NLDSGLRGFWPVLAGHLGHARLANRMIYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0335084_100560844	3300033004	Soil	MLSDRTNLASGLRGFWPVLAGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0335084_100660547	3300033004	Soil	MLAAQDTLASGLRGLWPVVDGHLGHARLANRMIYWLRRSSPTWLAHNDPQIRVLMKYPG
Ga0335084_101253852	3300033004	Soil	MLAAQDTLPLGLRGLWPVVGGHLGHARLANRMIYWLRRSSPTWLAHNDPQIRVLMKYPG
Ga0335084_101528751	3300033004	Soil	MITAQAHFASGLRGLWPVVAGHLGHARLANRMIYSLRRSSPTWLDHNDPQIRVLMKYPG
Ga0335084_104296231	3300033004	Soil	SRRTPVNDLEMLAEQNNLASGLRGFWPVVAGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVLMKYPG
Ga0335084_108571431	3300033004	Soil	MIAEQDTLSSGLRGFWLVVDGHLGHARLANRMIYWLRRSSPIWLAHNEP
Ga0335084_118895061	3300033004	Soil	MLTEQTNLASGLRGFWPVVDGHLGHARLANRMIYWLRRSSPTWLAHNDPEIRVLMKYPG
Ga0335077_103757121	3300033158	Soil	MLTEQTNLDSGLRGFSPVLAGHLVHARPANRMIYWPRRSSPTWLAQNDPEFRVLMKYPG
Ga0316605_108307931	3300033408	Soil	MWKLGLRGFWRVVAGHLGHARLANRMIYWLRRSSPTWRDHNAPEIRVLMKYPG
Ga0316603_123454142	3300033413	Soil	PPNDLHMPSVPTTLASGLRGLWPVLAGHLGHARLADRTLYRLRRSSPTWLAQNDPQIRVLMKYPG
Ga0316625_1017525711	3300033418	Soil	MPSVPTTLASGLRGLWPVLAGHLGHARLADRTLYRLRRSSPTWLAQNDPQIRVLMKYPG
Ga0316627_1007684801	3300033482	Soil	MFAEQTTLDSGLRGFWLVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0316626_119303562	3300033485	Soil	MFAEQTNLDSGLRGFWLVLDGHLGHARLANRMFYWLRRSSPTWLAQNDPEFRVLMKYPG
Ga0373917_0013917_102_281	3300034692	Sediment Slurry	MLAERTTLASGLRGFWPVLDGHLGHARLANRMIYWLRRSSPTWLAQNDPEIRVLMKYPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters